Publications

2020

Abascal, J.F.P.J., Ducros, N., Pronina, V., Bussod, S., Hauptmannz, A., Arridge, S.R., ...Peyrin, F. (2020). Material Decomposition Problem in Spectral CT: A Transfer Deep Learning Approach..

Alexander, N., Alexander, D.C., Barkhof, F., Denaxas, S. (2020). Using Unsupervised Learning to Identify Clinical Subtypes of Alzheimer's Disease in Electronic Health Records.. Stud Health Technol Inform, 270 499-503. doi:10.3233/SHTI200210

Arridge, S.R., Burger, M., Ehrhardt, M.J. (2020). Preface to special issue on joint reconstruction and multi-modality/multi-spectral imaging. INVERSE PROBLEMS, 36 (2), doi:10.1088/1361-6420/ab4abb

Aughwane, R., Mufti, N., Flouri, D., Maksym, K., Spencer, R., Sokolska, M., ...Deprest, J. (2020). MRI Measurement of Placental Perfusion and Oxygen Saturation in Early Onset Fetal Growth Restriction.. BJOG: An International Journal of Obstetrics & Gynaecology, doi:10.1111/1471-0528.16387

Bauermeister, S., Orton, C., Thompson, S., Barker, R.A., Bauermeister, J.R., Ben-Shlomo, Y., ...Calvin, C. (2020). The Dementias Platform UK (DPUK) Data Portal. European Journal of Epidemiology, doi:10.1007/s10654-020-00633-4

Bragman, F.J.S., Tanno, R., Ourselin, S., Alexander, D.C., Cardoso, M.J. (2020). Stochastic Filter Groups for Multi-Task CNNs: Learning Specialist and Generalist Convolution Kernels.

Breen-Norris, J.O., Siow, B., Walsh, C., Hipwell, B., Hill, I., Roberts, T., ...Alexander, D.C. (2020). Measuring diffusion exchange across the cell membrane with DEXSY (Diffusion Exchange Spectroscopy). Magnetic Resonance in Medicine, doi:10.1002/mrm.28207

Bronik, K., Yiannakas, M., Gandini Wheeler-Kingshott, C.A.M., Alexander, D., Prados Carrasco, F. (2020). A 3D Convolutional Deep Neural Network for lumbar plexus segmentation.

Brusaferri, L., Bousse, A., Emond, E., Brown, R., Tsai, Y.-.J., Atkinson, D., ...Arridge, S. (2020). Joint Activity and Attenuation Reconstruction from Multiple Energy Window Data with Photopeak Scatter Re-Estimation in non-TOF 3D PET. IEEE Transactions on Radiation and Plasma Medical Sciences, 1. doi:10.1109/trpms.2020.2978449

Brusaferri, L., Emond, E.C., Atkinson, D., Ourselin, S., Hutton, B.F., Arridge, S., Thielemans, K. (2020). Joint reconstruction of activity and attenuation in non-TOF PET using a synergistic prior to enforce structural similarities.

Caldwell, M., Andrews, J.T.A., Tanay, T., Griffin, L.D. (2020). AI-enabled future crime. Crime Science, 9 (1), doi:10.1186/s40163-020-00123-8

Caldwell, M., Griffin, L.D. (2020). Limits on transfer learning from photographic image data to X-ray threat detection. Journal of X-Ray Science and Technology, 27 (6), 1007-1020. doi:10.3233/XST-190545

Callaghan, R., Alexander, D.C., Palombo, M., Zhang, H. (2020). ConFiG: Contextual Fibre Growth to generate realistic axonal packing for diffusion MRI simulation. NeuroImage, 117107. doi:10.1016/j.neuroimage.2020.117107

Dreiman, G.H.S., Bictash, M., Fish, P.V., Griffin, L., Svensson, F. (2020). Changing the HTS Paradigm: AI-Driven Iterative Screening for Hit Finding.. SLAS Discov, 2472555220949495. doi:10.1177/2472555220949495

Firth, N.C., Primativo, S., Brotherhood, E., Young, A.L., Yong, K.X.X., Crutch, S.J., ...Oxtoby, N.P. (2020). Sequences of cognitive decline in typical Alzheimer's disease and posterior cortical atrophy estimated using a novel event-based model of disease progression.. Alzheimers Dement, doi:10.1002/alz.12083

Gabel, M.C., Broad, R.J., Young, A.L., Abrahams, S., Bastin, M.E., Menke, R.A.L., ...Alexander, D.C. (2020). Evolution of white matter damage in amyotrophic lateral sclerosis.. Ann Clin Transl Neurol, doi:10.1002/acn3.51035

Godard, C., Aodha, O.M., Firman, M., Brostow, G. (2020). Digging into self-supervised monocular depth estimation.

Grussu, F., Battiston, M., Veraart, J., Schneider, T., Cohen-Ada, J., Shepherd, T.M., ...Gandini Wheeler-Kingshott, C.A.M. (2020). Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising.. Neuroimage, 116884. doi:10.1016/j.neuroimage.2020.116884

Grussu, F., Blumberg, S., Battiston, M., Ianus, A., Singh, S., Gong, F., ...Punwani, S. (2020). SARDU-Net: a new method for model-free, data-driven experiment design in quantitative MRI.

Hauptmann, A., Adler, J., Arridge, S.R., Oktem, O. (2020). Multi-Scale Learned Iterative Reconstruction. IEEE Transactions on Computational Imaging, 1. doi:10.1109/tci.2020.2990299

Hu, Y., Jacob, J., Parker, G.J.M., Hawkes, D.J., Hurst, J.R., Stoyanov, D. (2020). The challenges of deploying artificial intelligence models in a rapidly evolving pandemic. Nature Machine Intelligence, doi:10.1038/s42256-020-0185-2

Jacob, J., Alexander, D., Baillie, J.K., Berka, R., Bertolli, O., Blackwood, J., ...Docherty, A. (2020). Using imaging to combat a pandemic: rationale for developing the UK National COVID-19 Chest Imaging Database.. Eur Respir J, doi:10.1183/13993003.01809-2020

Kaden, E., Gyori, N.G., Rudrapatna, S.U., Barskaya, I.Y., Dragonu, I., Does, M.D., ...Alexander, D.C. (2020). Microscopic susceptibility anisotropy imaging. Magn Reson Med, doi:10.1002/mrm.28303

Kim, M., Kujawa, A., Battiston, M., Demetriou, E., Schneider, T., Collorone, S., ...Atkinson, D. (2020). Translating pH-sensitive PROgressive saturation for Quantifying Exchange using Saturation Times (PRO-QUEST) MRI to a 3T Clinical Scanner. Magnetic Resonance in Medicine, doi:10.1002/mrm.28229

Klaser, K., Borges, P., Shaw, R., Ranzini, M., Modat, M., Atkinson, D., ...Cook, G. (2020). Uncertainty-aware multi-resolution whole-body MR to CT synthesis.

Kolehmainen, V., Ehrhardt, M.J., Arridge, S.R. (2020). INCORPORATING STRUCTURAL PRIOR INFORMATION AND SPARSITY INTO EIT USING PARALLEL LEVEL SETS [1] (vol 13, pg 285, 2019). INVERSE PROBLEMS AND IMAGING, 14 (2), 399. doi:10.3934/ipi.2020018

Lila, E., Arridge, S.R., Aston, J. (2020). Representation and reconstruction of covariance operators in linear inverse problems. Inverse Problems, doi:10.1088/1361-6420/ab8713

Lillington, J., Brusaferri, L., Klaser, K., Shmueli, K., Neji, R., Hutton, B., ...Ourselin, S. (2020). PET/MRI Attenuation estimation in the lung: A review of past, present, and potential techniques. Medical Physics, doi:10.1002/mp.13943

Macdonald, C., Arridge, S., Powell, S. (2020). Efficient inversion strategies for estimating optical properties with Monte Carlo radiative transport models. Journal of biomedical optics, 25 (8), doi:10.1117/1.JBO.25.8.085002

Mayer, J., Brown, R., Thielemans, K., Ovtchinnikov, E., Pasca, E., Atkinson, D., ...Makowski, M. (2020). Flexible numerical simulation framework for dynamic PET-MR data. Physics in Medicine & Biology, 65 (14), 145003. doi:10.1088/1361-6560/ab7eee

Mengoudi, K., Daniele, R., Yong, K., Primativo, S., Pavisic, I., Brotherhood, E., ...Alexander, D. (2020). Augmenting Dementia Cognitive Assessment with Instruction-less Eye-tracking Tests. IEEE Journal of Biomedical and Health Informatics, doi:10.1109/JBHI.2020.3004686

Muir, J., Arancibia-Carcamo, I.L., MacAskill, A.F., Smith, K.R., Griffin, L.D., Kittler, J.T. (2020). NMDA receptors regulate GABAA receptor lateral mobility and clustering at inhibitory synapses through serine 327 on the γ2 subunit.. SCIENCE ADVANCES, 6 (30), doi:10.1073/pnas.1000589107

Mylonas, D., Griffin, L.D. (2020). Coherence of achromatic, primary and basic classes of colour categories. Vision Research, 175 14-22. doi:10.1016/j.visres.2020.06.001

Nguyen, M., He, T., An, L., Alexander, D.C., Feng, J., Yeo, B.T.T. (2020). Predicting Alzheimer's disease progression using deep recurrent neural networks. NeuroImage, 222 doi:10.1016/j.neuroimage.2020.117203

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., ...Kokkinos, I. (2020). Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: algorithms and results.. Neuroimage, 117128. doi:10.1016/j.neuroimage.2020.117128

Ovtchinnikov, E., Brown, R., Kolbitsch, C., Pasca, E., da Costa-Luis, C., Gillman, A.G., ...Wadhwa, P. (2020). SIRF: Synergistic Image Reconstruction Framework. Computer Physics Communications, 107087. doi:10.1016/j.cpc.2019.107087

Palombo, M., Ianus, A., Guerreri, M., Nunes, D., Alexander, D.C., Shemesh, N., Zhang, H. (2020). SANDI: a compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI.. Neuroimage, 116835. doi:10.1016/j.neuroimage.2020.116835

Palombo, M., Singh, S., Whitaker, H., Punwani, S., Alexander, D., Panagiotaki, E. (2020). Relaxed-VERDICT: decoupling relaxation and diffusion for comprehensive microstructure characterization of prostate cancer..

PAPADIMITRIOU, K.I., ROSAS, E.E.V., ZHANG, E., COOPER, R.J., HEBDEN, J.C., ARRIDGE, S.R., POWELL, S. (2020). Dual wavelength spread-spectrum time-resolved diffuse optical instrument for the measurement of human brain functional responses. Biomedical Optics Express, 11 (7), 3477-3490. doi:10.1364/BOE.393586

Pascuzzo, R., Oxtoby, N.P., Young, A.L., Blevins, J., Castelli, G., Garbarino, S., ...Appleby, B.S. (2020). Prion propagation estimated from brain diffusion MRI is subtype dependent in sporadic Creutzfeldt–Jakob disease. Acta Neuropathologica, doi:10.1007/s00401-020-02168-0

Planell-Morell, P., Bajekal, M., Denaxas, S., Raine, R., Alexander, D.C. (2020). Trajectories of Disease Accumulation Using Electronic Health Records.. Stud Health Technol Inform, 270 469-473. doi:10.3233/SHTI200204

Prins, S., Langron, E., Hastings, C., Hill, E.J., Stefan, A.C., Griffin, L., Vergani, P. (2020). Fluorescence assay for simultaneous quantification of CFTR ion-channel function and plasma membrane proximity.. Journal of Biological Chemistry, doi:10.1074/jbc.RA120.014061

Rangelov, B.A., Young, A.L., Jacob, J., Cahn, A.P., Lee, S., Wilson, F.J., ...Hurst, J.R. (2020). Thoracic Imaging at Exacerbation of Chronic Obstructive Pulmonary Disease: A Systematic Review. International Journal of Chronic Obstructive Pulmonary Disease, Volume 15 1751-1787. doi:10.2147/copd.s250746

Rangelov, B., Young, A.L., Jacob, J., Cahn, A.P., Lee, S., Wilson, F.J., ...Hurst, J.R. (2020). Thoracic Imaging at Exacerbation of Chronic Obstructive Pulmonary Disease: A Systematic Review.

Roberts, T.A., Hyare, H., Agliardi, G., Hipwell, B., d'Esposito, A., Ianus, A., ...Atkinson, D. (2020). Noninvasive diffusion magnetic resonance imaging of brain tumour cell size for the early detection of therapeutic response.. Sci Rep, 10 (1), 9223. doi:10.1038/s41598-020-65956-4

Rodrigues, F.B., Byrne, L., Tortelli, R., Johnson, E., Wijeratne, P., Arridge, M., ...Schobel, S. (2020). Longitudinal dynamics of mutant huntingtin and neurofilament light in Huntington's disease: the prospective HD-CSF study. WILEY.

Schneider, C., Thompson, S., Totz, J., Song, Y., Allam, M., Sodergren, M.H., ...Gurusamy, K. (2020). Comparison of manual and semi-automatic registration in augmented reality image-guided liver surgery: a clinical feasibility study. Surgical Endoscopy, doi:10.1007/s00464-020-07807-x

Singh, S., Rogers, H., Johnston, E., Kanber, B., Moore, C., Atkinson, D., ...Punwani, S. (2020). VERDICT MRI fractional intracellular volume assessment could help avoid unnecessary biopsies in men assessed for prostate cancer with multi-parametric MRI.

Slator, P., Hutter, J., Marinescu, R., Palombo, M., Jackson, L., Ho, A., ...Alexander, D. (2020). Data-Driven Multi-Contrast Spectral Microstructure Imaging with InSpect.

Slator, P.J., Ho, A., Bakalis, S., Jackson, L., Chappell, L., Alexander, D., ...Hutter, J. (2020). Anisotropy in the Human Placenta in Pregnancies Complicated by Fetal Growth Restriction. In Özarslan, E., Furster, A., Schultz, T., Zhang, E. (Eds.), Anisotropy Across Fields and Scales. Springer.

Steeden, J.A., Quail, M., Gotschy, A., Mortensen, K.H., Hauptmann, A., Arridge, S., ...Muthurangu, V. (2020). Rapid whole-heart CMR with single volume super-resolution.. J Cardiovasc Magn Reson, 22 (1), 56. doi:10.1186/s12968-020-00651-x

Tanno, R., Saeedi, A., Sankaranarayanan, S., Alexander, D.C., Silberman, N. (2020). Learning from noisy labels by regularized estimation of annotator confusion.

Ton-Tran, K., Griffin, L., Chetty, K. (2020). Transfer Learning from Audio Deep Learning Models for Micro-Doppler Activity Recognition.

Tran, E.H., Eiben, B., Wetscherek, A., Oelfke, U., Meedt, G., Hawkes, D.J., McClelland, J.R. (2020). Evaluation of MRI-derived surrogate signals to model respiratory motion. Biomedical Physics & Engineering Express, doi:10.1088/2057-1976/ab944c

Twyman, R., Arridge, S., Hutton, B.F., Emond, E.C., Brusaferri, L., Ahn, S., Thielemans, K. (2020). Iterative PET Image Reconstruction using Adaptive Adjustment of Subset Size and Random Subset Sampling.

Usman, M., Kakkar, L., Matakos, A., KIRKHAM, A., Arridge, S., Atkinson, D. (2020). Joint B0 and image estimation integrated with model based reconstruction for field map update and distortion correction in prostate diffusion MRI. Magnetic Resonance Imaging, 65 90-99. doi:10.1016/j.mri.2019.09.008

Watson, J., Firman, M., Brostow, G., Turmukhambetov, D. (2020). Self-supervised monocular depth hints.

Wijeratne, P.A., Johnson, E.B., Eshaghi, A., Aksman, L., Gregory, S., Johnson, H.J., ...Georgiou-Karistianis, N. (2020). Robust markers and sample sizes for multi-centre trials of Huntington's disease.. Ann Neurol, doi:10.1002/ana.25709

Wilkinson-Smith, V., Hoad, C., Atkinson, D., Marciani, L., Corsetti, M., Scott, S.M., ...Spiller, R. (2020). Quantifying abnormal colonic function in constipation using MRI.

Wilkinson-Smith, V., Menys, A., Bradley, C., Corsetti, M., Marciani, L., Atkinson, D., ...Spiller, R. (2020). The MRI colonic function test: reproducibility of the Macrogol stimulus challenge. Neurogastroenterology and Motility, doi:10.1111/nmo.13942

Xu, M.-.C., Oxtoby, N., Alexander, D.C., Jacob, J. (2020). Learning To Pay Attention To Mistakes.

Zhang∗, L., Tanno, R., Bronik, K., Jin, C., Nachev, P., Barkhof, F., ...Alexander, D. (2020). Learning to Segment When Experts Disagree.

2019

Abeyakoon, O., Latifoltojar, A., Gong, F., Papoutsaki, M.-.V., Chowdhury, R., Glaser, M., ...Twyman, F. (2019). Hyperpolarised 13C MRI: a new horizon for non-invasive diagnosis of aggressive breast cancer. BJR|case reports, 5 (3), 20190026. doi:10.1259/bjrcr.20190026

Aksman, L., Scelsi, M., Marquand, A., Alexander, D., Ourselin, S., Altmann, A. (2019). Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning. Human Brain Mapping, doi:10.1002/hbm.24682

Antonelli, M., Johnston, E.W., Dikaios, N., Cheung, K.K., Sidhu, H.S., Appayya, M.B., ...Allen, C. (2019). Machine learning classifiers can predict Gleason pattern 4 prostate cancer with greater accuracy than experienced radiologists.. Eur Radiol, doi:10.1007/s00330-019-06244-2

Antonelli, M., Johnston, E.W., Dikaios, N., Cheung, K.K., Sidhu, H.S., Appayya, M.B., ...Allen, C. (2019). Correction to: Machine learning classifiers can predict Gleason pattern 4 prostate cancer with greater accuracy than experienced radiologists.. Eur Radiol, doi:10.1007/s00330-019-06429-9

Archetti, D., Ingala, S., Venkatraghavan, V., Wottschel, V., Young, A.L., Bellio, M., ...Alexander, D.C. (2019). Multi-study validation of data-driven disease progression models to characterize evolution of biomarkers in Alzheimer's disease.. Neuroimage Clin, 24 101954. doi:10.1016/j.nicl.2019.101954

Arridge, S., Hauptmann, A. (2019). Networks for Nonlinear Diffusion Problems in Imaging. Journal of Mathematical Imaging and Vision, doi:10.1007/s10851-019-00901-3

Arridge, S., Maass, P., Öktem, O., Schönlieb, C.B. (2019). Solving inverse problems using data-driven models. Acta Numerica, 28 1-174. doi:10.1017/S0962492919000059

Aughwane, R., Sokolska, M., Flouri, D., Spencer, R., Maksym, K., Mufti, N., ...Deprest, J. (2019). Placental Perfusion and Fetal Blood Oxygen Saturation Measured with MRI in Normal Pregnancy and Fetal Growth Restriction..

Bagnato, F., Franco, G., Li, H., Kaden, E., Ye, F., Fan, R., ...Dortch, R. (2019). Probing axons using multi-compartmental diffusion in multiple sclerosis. Annals of Clinical and Translational Neurology, doi:10.1002/acn3.50836

Bailey, C., Bourne, R.M., Siow, B., Johnston, E.W., Brizmohun Appayya, M., Pye, H., ...Freeman, A. (2019). VERDICT MRI validation in fresh and fixed prostate specimens using patient-specific moulds for histological and MR alignment.. NMR Biomed, e4073. doi:10.1002/nbm.4073

Bertholet, J., Eiben, B., Menten, M.J., Tran, E.H., Hawkes, D.J., Nill, S., ...Oelfke, U. (2019). Motion-including dose reconstruction on 4DCT or patient-specific motion models validated on a time-resolved ground truth.

Bertholet, J., Eiben, B., Menten, M.J., Tran, E.H., Hawkes, D.J., Nill, S., ...Oelfke, U. (2019). Validation of motion-including dose reconstruction on a ground-truth time-resolved moving anatomy.

Bertholet, J., Eiben, B., Menten, M., Tran, E.H., Hawkes, D.J., Wetscherek, A., ...Oelfke, U. (2019). In silico validation of motion-including dose reconstruction for MR-guided lung SBRT using a patient specific motion model.

Blumberg, S.B., Palombo, M., Khoo, C.S., Tax, C.M.W., Tanno, R., Alexander, D.C. (2019). Multi-stage prediction networks for data harmonization.

Bragman, F.J.S., Tanno, R., Ourselin, S., Alexander, D.C., Cardoso, M.J. (2019). Learning task-specific and shared representations in medical imaging.

Breen-Norris, J., Siow, B., Hipwell, B., Roberts, T., Lythgoe, M., Ianus, A., ...Walker-Samuel, S. (2019). Using Diffusion-Diffusion Exchange Spectroscopy to observe diffusion exchange in yeast. Diffusion Fundamentals, 31 1-5.

Brusaferri, L., Bousse, A., Tsai, Y.J., Atkinson, D., Ourselin, S., Hutton, B.F., ...Thielemans, K. (2019). Maximum-likelihood estimation of emission and attenuation images in 3D PET from multiple energy window measurements.

Byrne, L.M., Brogueira Rodrigues, F., Tortelli, R., Johnson, E., Wijeratne, P., Wylezinska-Arridge, M., ...Scahill, R. (2019). Longitudinal Evaluation of Mutant Huntingtin and Neurofilament Light as Biomarkers for Huntington’s Disease: The HD-CSF Study 24-month Analysis.

Byrne, L.M., Rodrigues, F.B., Tortelli, R., Johnson, E.B., Wijeratne, P.A., Wylezinska-Arridge, M., ...Scahill, R.I. (2019). Longitudinal Evaluation of Mutant Huntingtin and Neurofilament Light as Biomarkers for Huntington's Disease: The HD-CSF Study 24-month Analysis.

Callaghan, R., Alexander, D.C., Zhang, H., Palombo, M. (2019). Contextual fibre growth to generate realistic axonal packing for diffusion MRI simulation. In Chung, A., Gee, J., Yushkevich, P. (Eds.), Information processing in medical imaging - IPMI 2019. (pp. 429-440). Springer.

Callaghan, R., Alexander, D., Zhang, H., Palombo, M. (2019). Contextual fibre growth to generate realistic axonal packing for diffusion MRI simulation.

Callaghan, R., Shemesh, N., Alexander, D., Zhang, H., Palombo, M. (2019). Towards a more realistic and flexible white matter numerical phantom generator for diffusion MRI simulation.

Christiaens, D., Slator, P., Cordero-Grande, L., PRICE, A., Deprez, M., Alexander, D., ...Hutter, J. (2019). In utero diffusion MRI: challenges, advances, and applications. Topics in Magnetic Resonance Imaging, doi:10.1097/RMR.0000000000000211

Cochran, J.M., Busch, D.R., Lin, L., Minkoff, D.L., Schweiger, M., Arridge, S., Yodh, A.G. (2019). Hybrid time-domain and continuous-wave diffuse optical tomography instrument with concurrent, clinical magnetic resonance imaging for breast cancer imaging. Journal of biomedical optics, 24 (5), 1-11. doi:10.1117/1.JBO.24.5.051409

Collorone, S., Cawley, N., Grussu, F., Prados, F., Tona, F., Calvi, A., ...Zhang, H. (2019). Reduced neurite density in the brain and cervical spinal cord in relapsing-remitting multiple sclerosis: A NODDI study.. Mult Scler, 1352458519885107. doi:10.1177/1352458519885107

Di Sciacca, G., Ferocino, E., Farina, A., Pifferi, A., Taroni, P., Arridge, S. (2019). Fitting a spectral model for component analysis in diffuse optical tomography.

Djurabekova, N., Goldberg, A., Hauptmann, A., Hawkes, D., Long, G., Lucka, F., Betcke, M. (2019). Application of Proximal Alternating Linearized Minimization (PALM) and inertial PALM to dynamic 3D CT.

Donaldson, I.A., Hu, Y., Rodell, R., Villarini, B., Bonmati, E., Tranter, P., ...Van Der Meulen, J. (2019). The SmartTarget biopsy trial: a prospective, within-person randomised, blinded trial comparing the accuracy of visual-registration and magnetic resonance imaging/ultrasound image-fusion targeted biopsies for prostate cancer risk stratification. European Urology, doi:10.1016/j.eururo.2018.08.007

Ebner, M., Patel, P.A., Atkinson, D., Caselton, L., Firmin, L., Amin, Z., ...Ourselin, S. (2019). Super-resolution for upper abdominal MRI: Acquisition and post-processing protocol optimization using brain MRI control data and expert reader validation. Magnetic Resonance in Medicine, doi:10.1002/mrm.27852

Ebner, M., Patel, P., Atkinson, D., Caselton, L., Taylor, S., Bainbridge, A., ...Vercauteren, T. (2019). Reconstruction-based super-resolution for high-resolution abdominal MRI: A preliminary study.

Eshaghi, A., Kievit, R.A., Prados Carrasco, F., Sudre, C., Nicholas, J., Cardoso, M.J., ...Greenwood, J. (2019). Applying causal models to explore the mechanism of action of simvastatin in progressive multiple sclerosis.. PNAS,

Eshaghi, A., Young, A., Wijeratne, P., Prados, F., Kapoor, R., Chataway, J., ...Thompson, A.J. (2019). Subtyping and staging progressive MS using MRI.

Evans, V.S., Torrealdea, F., Rega, M., Brizmohun Appayya, M., Latifoltojar, A., Sidhu, H., ...Golay, X. (2019). Optimization and Repeatability of Multipool Chemical Exchange Saturation Transfer MRI of the Prostate at 3.0 T. Journal of Magnetic Resonance Imaging, doi:10.1002/jmri.26690

Fairbrass, A.J., Firman, M., Williams, C., Brostow, G.J., Titheridge, H., Jones, K.E. (2019). CityNet—Deep learning tools for urban ecoacoustic assessment. Methods in Ecology and Evolution, doi:10.1111/2041-210X.13114

Farina, A., Betcke, M., Bassi, A., Valentini, G., Arridge, S., D'Andrea, C. (2019). An adaptive scheme for diffuse-optical tomography based on combined structured-light illumination and single-pixel camera detection.

Farina, A., Candeo, A., Dalla Mora, A., Bassi, A., Lussana, R., Villa, F., ...D’Andrea, C. (2019). Novel time-resolved camera based on compressed sensing. Optics Express, 27 (22), 31889-31899. doi:10.1364/OE.27.031889

Ferocino, E., Di Sciacca, G., Di Sieno, L., Dalla Mora, A., Pifferi, A., Arridge, S., ...Farina, A. (2019). Multi-wavelength time domain diffuse optical tomography for breast cancer: Initial results on silicone phantoms.

Ferocino, E., Di Sciacca, G., Di Sieno, L., Dalla Mora, A., Pifferi, A., Arridge, S., ...Farina, A. (2019). Spectral approach to time domain diffuse optical tomography for breast cancer: Validation on meat phantoms.

Ferocino, E., Pifferi, A., Arridge, S., Martelli, F., Taroni, P., Farina, A. (2019). Multi Simulation Platform for Time Domain Diffuse Optical Tomography: An Application to a Compact Hand-Held Reflectance Probe. APPLIED SCIENCES-BASEL, 9 (14), doi:10.3390/app9142849

Firth, N.C., Primativo, S., Marinescu, R.-.V., Shakespeare, T.J., Suarez-Gonzalez, A., Lehmann, M., ...Paterson, R.W. (2019). Longitudinal neuroanatomical and cognitive progression of posterior cortical atrophy.. Brain, doi:10.1093/brain/awz136

Fisher, C.K., Smith, A.M., Walsh, J.R., Simone, A.J., Edgar, C., Jack, C.R., ...Grosset, D. (2019). Machine learning for comprehensive forecasting of Alzheimer's Disease progression. SCIENTIFIC REPORTS, 9 doi:10.1038/s41598-019-49656-2

Flouri, D., David, A., Atkinson, D., Pratt, R., Mufti, N., Sokolska, M., ...Kendall, G. (2019). Improved Placental Parameter Estimation Using Data-Driven Bayesian Modelling.

Flouri, D., Owen, D., Aughwane, R., Mufti, N., Maksym, K., Sokolska, M., ...Vercauteren, T. (2019). Improved fetal blood oxygenation and placental estimated measurements of diffusion-weighted MRI using data-driven Bayesian modeling. Magnetic Resonance in Medicine, doi:10.1002/mrm.28075

Flouri, D., Pratt, R., Sokolska, M., Mufti, N., Atkinson, D., Kendall, G., ...David, A. (2019). Model-Driven Registration for 3D Placental Diffusion-Weighted MRI.

Garbarino, S., Lorenzi, M., Oxtoby, N.P., Vinke, E.J., Marinescu, R.V., Eshaghi, A., ...Barkhof, F. (2019). Differences in topological progression profile among neurodegenerative diseases from imaging data.. Elife, 8 doi:10.7554/eLife.49298

Gollifer, R., Menys, A., Mansson, S., Leander, P., Ekberg, O., Taylor, S.A., ...Ohlsson, B. (2019). Comparison of MRI assessed small bowel dysmotility in irritable bowel syndrome (IBS) and healthy controls.

Gollifer, R., Menys, A., Zarate-Lopez, N., Chatoor, D., Emmanuel, A., Taylor, S., Atkinson, D. (2019). MRI assessed dysmotility and texture analysis in the terminal ileum and small bowel: A pilot study comparison between Irritable Bowel Syndrome (IBS) patients with bloating and healthy controls.

Gollifer, R.M., Menys, A., Plumb, A., Mengoudi, K., Puylaert, C.A.J., Tielbeek, J.A.W., ...Taylor, S.A. (2019). Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease. Clinical Radiology, doi:10.1016/j.crad.2019.06.016

Gong, Y., Devine, W., Giganti, F., Atkinson, D., Punwani, S. (2019). Optimisation of luminal water imaging for classification of prostate cancer.

Griffin, L.D. (2019). Reconciling the statistics of spectral reflectance and colour. PLOS ONE, 14 (11), e0223069. doi:10.1371/journal.pone.0223069

Griffin, L.D., Caldwell, M., Andrews, J., Bohler, H. (2019). ‘Unexpected item in the bagging area’: Anomaly Detection in X-ray Security Images. IEEE Transactions on Information Forensics and Security, doi:10.1109/TIFS.2018.2881700

Griffin, L.D., Mylonas, D. (2019). Categorical Colour Geometry. PLoS ONE, doi:10.1371/journal.pone.0216296

Grussu, F., Battiston, M., Prados Carrasco, F.E.R.R.A.N., Schneider, T.O.R.B.E.N., Kaden, E.N.R.I.C.O., Samson, R.E.B.E.C.C.A., ...Wheeler-Kingshott, C.L.A.U.D.I.A. (2019). Clinically viable g-ratio imaging with unified readout at 3T: evaluation and comparison.

Grussu, F., Battiston, M., Veraart, J., Schneider, T., Cohen-Adad, J., Shepherd, T., ...Wheeler-Kingshott, C.G. (2019). Multi-parametric quantitative spinal cord MRI with unified signal readout and image denoising. .

Hutter, J., Slator, P., Jackson, L., Ho, A., McCabe, L., Story, L., ...Rutherford, M. (2019). Joint T2*-Diffusion MRI to assess microstructure and oxygenation simultaneously in the human placenta.

Huynh, N., Lucka, F., Zhang, E., Betcke, M., Arridge, S.R., Beard, P.C., Cox, B.T. (2019). Single-pixel camera photoacoustic tomography. Journal of Biomedical Optics, 24 (12), 1-6. doi:10.1117/1.JBO.24.12.121907

Ianus, A., Callaghan, R., Alexander, D., Zhang, H., Palombo, M. (2019). Effect of cell complexity and size on diffusion MRI signal: a simulation study.

Ianuş, A., Santiago, I., Galzerano, A., Montesinos, P., Loução, N., Sanchez-Gonzalez, J., ...Shemesh, N. (2019). Higher-order diffusion MRI characterization of mesorectal lymph nodes in rectal cancer.. Magn Reson Med, doi:10.1002/mrm.28102

Intharah, T., Turmukhambetov, D., Brostow, G.J. (2019). HILC: Domain-Independent PbD System Via Computer Vision and Follow-Up Questions. ACM Transactions on Interactive Intelligent Systems, 9 (2-3), doi:10.1145/3234508

Jin, B., Arridge, S., Zhang, C. (2019). Expectation propagation for Poisson data. Inverse Problems, doi:10.1088/1361-6420/ab15a3

Johnson, D., Ricciardi, A., Brownlee, W., Kanber, B., Prados Carrasco, F., Collorone, S., ...Wheeler-Kingshott, C. (2019). Sensitivity of NODDI and two-compartment SMT parameter maps in multiple sclerosis.

Johnstone, R., Atkinson, D., Chouhan, M., Sharma, R., McClelland, J. (2019). Free-breathing MRI of the upper abdomen assisted by motion modelling.

Johnston, E.W., Bonet-Carne, E., Ferizi, U., Yvernault, B., Pye, H., Patel, D., ...Sidhu, H.S. (2019). VERDICT MRI for Prostate Cancer: Intracellular Volume Fraction versus Apparent Diffusion Coefficient.. Radiology, 181749. doi:10.1148/radiol.2019181749

Kelly, C.J., Christiaens, D., Batalle, D., Makropoulos, A., Cordero-Grande, L., Steinweg, J.K., ...Victor, S. (2019). Abnormal Microstructural Development of the Cerebral Cortex in Neonates With Congenital Heart Disease Is Associated With Impaired Cerebral Oxygen Delivery.. J Am Heart Assoc, 8 (5), e009893. doi:10.1161/JAHA.118.009893

Kim, M., Battiston, M., Demetriou, E., Kujawa, A., Schneider, T., Evans, V., ...Golay, X. (2019). Translating pH-sensitive PROgressive saturation for Quantifying Exchange using Saturation Times (PRO-QUEST) MRI to a 3T Clinical Scanner.

Kim, M., Torrealdea, F., Adeleke, O., Rega, M., Evans, V., Beeston, T., ...Okuchi, S. (2019). Challenges in glucoCEST MR body imaging at 3 Tesla. Quantitative Imaging in Medicine and Surgery, 9 (10), doi:10.21037/qims.2019.10.05

Klaser, K., Varsavsky, T., Markiewicz, P., Atkinson, D., Thielemans, K., Hutton, B., ...Ourselin, S. (2019). Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning.

Kolehmainen, V., Ehrhardt, M.J., Arridge, S.R. (2019). Incorporating structural prior information and sparsity into EIT using parallel level sets. Inverse Problems and Imaging, 13 (2), 285-307. doi:10.3934/ipi.2019015

Kowalik, G., Steeden, J., Atkinson, D., Montalt-Tordera, J., Mortenson, K., Muthurangu, V. (2019). Golden ratio stack of spirals for flexible angiographic imaging: Proof of concept in congenital heart disease. Magnetic Resonance in Medicine, doi:10.1002/mrm.27353

Lacher, R.M., Vasconcelos, F., Williams, N., Rindermann, G., Hipwell, J., Hawkes, D., Stoyanov, D. (2019). Nonrigid reconstruction of 3D breast surfaces with a low-cost RGBD camera for surgical planning and aesthetic evaluation. Medical Image Analysis, 53 11-25. doi:10.1016/j.media.2019.01.003

Lin, H., Figini, M., Tanno, R., Blumberg, S.B., Kaden, E., Ogbole, G., ...Lagunju, I. (2019). Deep Learning for Low-Field to High-Field MR: Image Quality Transfer with Probabilistic Decimation Simulator.

Lorenzi, M., Filippone, M., Frisoni, G.B., Alexander, D.C., Ourselin, S., Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2019). Probabilistic disease progression modeling to characterize diagnostic uncertainty: Application to staging and prediction in Alzheimer's disease.. NeuroImage, doi:10.1016/j.neuroimage.2017.08.059

Macdonald, C.M., Arridge, S.R., Munro, P.R.T. (2019). Solving the Inverse Problem in OCT using Full-Wave Adjoint Models.

Marinescu, R.V., Eshaghi, A., Alexander, D.C., Golland, P. (2019). BrainPainter: A Software for the Visualisation of Brain Structures, Biomarkers and Associated Pathological Processes.

Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alexander, D.C. (2019). DIVE: A spatiotemporal progression model of brain pathology in neurodegenerative disorders.. CoRR, abs/1901.03553

Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2019). DIVE: A spatiotemporal progression model of brain pathology in neurodegenerative disorders.. Neuroimage, doi:10.1016/j.neuroimage.2019.02.053

Marinescu, R.V., Lorenzi, M., Blumberg, S.B., Young, A.L., Planell-Morell, P., Oxtoby, N.P., ...Golland, P. (2019). Disease Knowledge Transfer Across Neurodegenerative Diseases.

Marinescu, R.V., Oxtoby, N.P., Young, A.L., Bron, E.E., Toga, A.W., Weiner, M.W., ...Klein, S. (2019). TADPOLE challenge: Accurate alzheimer’s disease prediction through crowdsourced forecasting of future data.

Mayer, J., Thielemans, K., Ovtchinnikov, E., Atkinson, D., Marsden, P., Schaffter, T., Kolbitsch, C. (2019). Flexible numerical simulation framework for dynamic PET-MRI.

Menys, A., Hoad, C., Spiller, R., Scott, M., Atkinson, D., Marciani, L., Taylor, S. (2019). Spatio-Temporal Motility MRI (STMM) analysis of the stomach and colon. Neurogastroenterology and Motility, doi:10.1111/nmo.13557

Mertzanidou, T., Calvert, N., Tuch, D.S., Stoyanov, D., Arridge, S.R. (2019). Tomosynthesis method for depth resolution of beta emitters.

Nai, Y., Schaefferkoetter, J.D., Fakhry-Darian, D., Conti, M., Shi, X., Townsend, D.W., ...Reilhac, A. (2019). Improving Lung Lesion Detection in Low Dose Positron Emission Tomography Images Using Machine Learning.

Palombo, M., Alexander, D.C., Zhang, H. (2019). A generative model of realistic brain cells with application to numerical simulation of the diffusion-weighted MR signal. NeuroImage, 188 391-402. doi:10.1016/j.neuroimage.2018.12.025

Palombo, M., Figini, M., Pascuzzo, R., Caroppo, P., Verri, M., Schneider, T., ...Zhang, H. (2019). Improving strain diagnosis of prion disease by diffusion MRI and biophysical modelling.

Palombo, M., Nunes, D., Alexander, D., Zhang, H., Shemesh, N. (2019). Histological validation of the brain cell body imaging with diffusion MRI at ultrahigh field.

Papadimitriou, K., Hebden, J., Arridge, S., Powell, S. (2019). A dual-wavelength spread spectrum-based spectroscopic system For time-domain near-infrared diffuse optical imaging.

Pecheva, D., Tournier, J.D., Pietsch, M., Christiaens, D., Batalle, D., Alexander, D.C., ...Counsell, S.J. (2019). Fixel-based analysis of the preterm brain: Disentangling bundle-specific white matter microstructural and macrostructural changes in relation to clinical risk factors. NeuroImage: Clinical, 23 doi:10.1016/j.nicl.2019.101820

Powell, S., Cox, B.T., Arridge, S.R. (2019). A pseudospectral method for solution of the radiative transport equation. JOURNAL OF COMPUTATIONAL PHYSICS, 384 376-382. doi:10.1016/j.jcp.2019.01.024

Prins, S., Langron, E., Hastings, C., Hill, E., Stefan, A., Griffin, L., Vergani, P. (2019). High-content assay for CFTR monitoring: simultaneous quantification of channel function and biogenesis. .

Quan, K., Tanno, R., Duong, M., Nair, A., Shipley, R., Jones, M., ...Jacob, J. (2019). Modelling Airway Geometry as Stock Market Data Using Bayesian Changepoint Detection.

Quan, K., Tanno, R., Shipley, R.J., Brown, J.S., Jacob, J., Hurst, J.R., Hawkes, D.J. (2019). Reproducibility of an airway tapering measurement in computed tomography with application to bronchiectasis. Journal of Medical Imaging, 6 (3), doi:10.1117/1.JMI.6.3.034003

Ramalhinho, J., Tregidgo, H., Allam, M., Travlou, N., Gurusamy, K., Davidson, B., ...Clarkson, M. (2019). Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors.

Ravi, D., Alexander, D.C., Oxtoby, N.P. (2019). Degenerative Adversarial NeuroImage Nets: Generating Images that Mimic Disease Progression. In Shen, D., Liu, T., Peters, T.M., Staib, L.H., Essert, C., Zhou, S., ...Khan, A. (Eds.), (pp. 164-172). SPRINGER INTERNATIONAL PUBLISHING AG.

Ravì, D., Alexander, D.C., Oxtoby, N.P. (2019). Degenerative Adversarial NeuroImage Nets: Generating Images that Mimic Disease Progression..

Ravi, D., Ghavami, N., Alexander, D.C., Ianus, A. (2019). Current Applications and Future Promises of Machine Learning in Diffusion MRI.

Ricciardi, A., Grussu, F., Battiston, M., Prados Carrasco, F., Kanber, B., Samson, R., ...Wheeler-Kingshott, C. (2019). Myelin-sensitive indices in multiple sclerosis: the unseen qualities of qualitative clinical MRI.

Rodrigues, F.B., Byrne, L., Johnson, E., Tortelli, R., Wijeratne, P., De Vita, E., ...Scahill, R. (2019). Longitudinal evaluation of mutant huntingtin and neurofilament light as biomarkers for Huntington's disease: the HD-CSF study.

Rodrigues, F.B., Byrne, L.M., Johnson, E., Wijeratne, P., de Vita, E., Alexander, D., ...Scahill, R. (2019). Evaluation of mutant huntingtin and neurofilament proteins as potential markers in Huntington's disease.

Romero, K., Conrado, D., Burton, J., Nicholas, T., Sinha, V., Macha, S., ...Marek, K. (2019). Molecular Neuroimaging of the Dopamine Transporter as a Patient Enrichment Biomarker for Clinical Trials for Early Parkinson's Disease. Clinical and Translational Science, 12 (3), 240-246. doi:10.1111/cts.12619

Schneider, C., Thompson, S., Gurusamy, K., Stoyanov, D., Hawkes, D.J., Clarkson, M.J., Davidson, B.R. (2019). Evaluation of an augmented reality based image guidance system for laparoscopic liver surgery.

Slator, P., Aughwane, R., Cade, G., Taylor, D., David, A.L., Lewis, R., ...Millischer, A.-.E. (2019). Placenta Imaging Workshop 2018 report: Multiscale and multimodal approaches. Placenta, doi:10.1016/j.placenta.2018.10.010

Slator, P., Hutter, J., Marinescu, R., Palombo, M., Young, A., Jackson, L., ...Hajnal, J. (2019). InSpect: INtegrated SPECTral Component Estimation and Mapping for Multi-Contrast Microstructural MRI.

Slator, P., Hutter, J., Palombo, M., Jackson, L.H., Ho, A., Panagiotaki, E., ...Alexander, D. (2019). Combined Diffusion-Relaxometry MRI to Identify Dysfunction in the Human Placenta. Magnetic Resonance in Medicine, doi:10.1002/mrm.27733

Slator, P., Hutter, J., Palombo, M., Jackson, L., Panagiotaki, E., Ho, A., ...Alexander, D. (2019). Combined Diffusion-Relaxometry MRI to Identify Dysfunction in the Human Placenta.

Smith, L., Melbourne, A., Owen, D., Cardoso, M., Sudre, C., Tillin, T., ...Ourselin, S. (2019). Cortical cerebral blood flow in ageing: effects of haematocrit, sex, ethnicity and diabetes. European Radiology, doi:10.1007/s00330-019-06096-w

Stephenson, D., Akalu, M., Alexander, R., Bloem, B., Boroojerdi, B., Bravi, D., ...Dorsey, E.R. (2019). Critical Path for Parkinson's: Catalyzing Innovation for Parkinson's Clinical Trials through Data Sharing and Regulatory Science.

Stephenson, D., Hill, D., Cedarbaum, J.M., Tome, M., Vamvakas, S., Romero, K., ...Jennings, D. (2019). The Qualification of an Enrichment Biomarker for Clinical Trials Targeting Early Stages of Parkinson's Disease. Journal of Parkinson's Disease, 9 (3), 553-563. doi:10.3233/JPD-191648

Stephenson, D., Hill, D., Cedarbaum, J.M., Tome, M., Vamvakas, S., Romero, K., ...Jennings, D. (2019). The Qualification of an Enrichment Biomarker for Clinical Trials Targeting Early Stages of Parkinson's Disease. Journal of Parkinson's disease, 9 (4), 825. doi:10.3233/JPD-199003

Tanno, R., Arulkumaran, K., Alexander, D.C., Criminisi, A., Nori, A. (2019). Adaptive neural trees.

Tax, C.M., Grussu, F., Kaden, E., Ning, L., Rudrapatna, U., Evans, J., ...Merhof, D. (2019). Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms.. Neuroimage, doi:10.1016/j.neuroimage.2019.01.077

Tran, E.H., Eiben, B., Wetscherek, A., Oelfke, U., Meedt, G., Hawkes, D.J., McClelland, J.R. (2019). MR-derived signals for respiratory motion models evaluated using sagittal and coronal datasets.

Tran, E.H., Eiben, B., Wetscherek, A., Oelfke, U., Meedt, G., Hawkes, D., McClelland, J. (2019). Respiratory motion models built using MR-derived signals and different amounts of MR image data from multi-slice acquisitions.

Tran, M., Latifoltojar, A., Neves, J., Papoutsaki, M.-.V., Gong, Y., Comment, A., ...El Sheikh, S. (2019). First-in-human in vivo non-invasive assessment of intra-tumoral metabolic heterogeneity in renal cell carcinoma. BJR|case reports, doi:10.1259/bjrcr.20190003

Tsai, Y.J., Bousse, A., Ahn, S., Stearns, C.W., Arridge, S., Hutton, B.F., Thielemans, K. (2019). Algorithms for Solving Misalignment Issues in Penalized PET/CT Reconstruction Using Anatomical Priors.

Tsai, Y.-.J., Schramm, G., Ahn, S., Bousse, A., Arridge, S., Nuyts, J., ...Thielemans, K. (2019). Benefits of Using a Spatially-variant Penalty Strength with Anatomical Priors in PET Reconstruction. IEEE Trans Med Imaging, doi:10.1109/TMI.2019.2913889

Usman, M., Matakos, A., Kakkar, L., Arridge, S., Atkinson, D. (2019). Model based joint B0 and image estimation framework for dynamic field mapping and signal pile-up correction in prostate diffusion MRI.

Wottschel, V., Chard, D.T., Enzinger, C., Filippi, M., Frederiksen, J.L., Gasperini, C., ...De Stefano, N. (2019). SVM recursive feature elimination analyses of structural brain MRI predicts near-term relapses in patients with clinically isolated syndromes suggestive of Multiple Sclerosis. NeuroImage: Clinical, 102011. doi:10.1016/j.nicl.2019.102011

Young, A.L., Bragman, F.J.S., Rangelov, B., Han, M., Galbán, C.J., Lynch, D.A., ...COPDGene, I.n.v.e.s.t.i.g.a.t.o.r.s. (2019). Disease Progression Modelling in Chronic Obstructive Pulmonary Disease (COPD).. Am J Respir Crit Care Med, doi:10.1164/rccm.201908-1600OC

2018

Allan, M., Ourselin, S., Hawkes, D.J., Kelly, J.D., Stoyanov, D. (2018). 3D Pose Estimation of Articulated Instruments in Robotic Minimally Invasive Surgery. IEEE Transactions on Medical Imaging, doi:10.1109/TMI.2018.2794439

Arridge, S.R., Ito, K., Jin, B., Zhang, C. (2018). Variational Gaussian approximation for Poisson data. Inverse Problems, 34 (2), doi:10.1088/1361-6420/aaa0ab

Atkinson, D., Usman, M., Kakkar, L.S., Arridge, S.R. (2018). 5652 Geometry in MR Reconstruction.

Bailey, C., Collins, D.J., Tunariu, N., Orton, M.R., Morgan, V.A., Feiweier, T., ...Panagiotaki, E. (2018). Microstructure characterization of Bone Metastases from Prostate cancer with Diffusion MRI: Preliminary Findings. Frontiers in Oncology, 8 doi:10.3389/fonc.2018.00026

Banerjee, J., Patel, P.A., Ushakov, F., Peebles, D., Deprest, J., Ourselin, S., ...Vercauteren, T. (2018). A Log-Euclidean and Total Variation based Variational Framework for Computational Sonography.

Batalle, D., O'Muircheartaigh, J., Makropoulos, A., Kelly, C.J., Dimitrova, R., Hughes, E.J., ...Edwards, A.D. (2018). Different patterns of cortical maturation before and after 38 weeks gestational age demonstrated by diffusion MRI in vivo. NeuroImage, doi:10.1016/j.neuroimage.2018.05.046

Bertolli, O., Arridge, S., Stearns, C.W., Wollenweber, S.D., Hutton, B.F., Thielemans, K. (2018). Improvement of the Sign Determination Method for Data-Driven respiratory signal in TOF-PET.

Bertolli, O., Cuplov, V., Arridge, S., Stearns, C.W., Wollenweber, S.D., Hutton, B.F., Thielemans, K. (2018). Detection of Lung Density Variations with Principal Component Analysis in PET.

Bertolli, O., Sanderson, T., Alnaim, A., Wan, M.Y.S., Wollenweber, S., Stearns, C., ...Thielemans, K. (2018). Evaluation of data-driven respiratory gating in PET with PCA.

Blumberg, S.B., Tanno, R., Kokkinos, I., Alexander, D.C. (2018). Deeper Image Quality Transfer: Training Low-Memory Neural Networks for 3D Images. SPRINGER INTERNATIONAL PUBLISHING AG.

Blumberg, S.B., Tanno, R., Kokkinos, I., Alexander, D.C. (2018). Deeper Image Quality Transfer: Training Low-Memory Neural Networks for 3D Images..

Bonet-Carne, E., Daducci, A., Johnston, E., Jacobs, J., Freeman, A., Atkinson, D., ...panagiotaki, E. (2018). VERDICT Prostate Parameter Estimation with AMICO.

Bonet-Carne, E., Johnston, E., Daducci, A., Jacobs, J.G., Freeman, A., Atkinson, D., ...Panagiotaki, E. (2018). VERDICT‐AMICO: Ultrafast fitting algorithm for non‐invasive prostate microstructure characterization. NMR in Biomedicine, doi:10.1002/nbm.4019

Bonet-Carne, E., Tariq, M., Pye, H., Brizmohun, M., Haider, A., Bayley, C., ...Atkinson, D. (2018). Histological Validation of in-vivo VERDICT MRI for Prostate using 3D Personalised Moulds.

Bragman, F.J.S., Tanno, R., Eaton-Rosen, Z., Li, W., Hawkes, D.J., Ourselin, S., ...Cardoso, M.J. (2018). Uncertainty in Multitask Learning: Joint Representations for Probabilistic MR-only Radiotherapy Planning.

Bragman, F.J.S., Young, A.L., Hawkes, D.J., Alexander, D.C., Hurst, J.R. (2018). Disease progression patterns in COPD.

Brandao, P., Zisimopoulos, O., Mazomenos, E.B., Ciuti, G., Bernal, J., Scarzanella, M.V., ...Arezzo, A. (2018). Towards a Computed-Aided Diagnosis System in Colonoscopy: Automatic Polyp Segmentation Using Convolution Neural Networks.. Journal of Medical Robotics Research, 3 1840002:1. doi:10.1142/S2424905X18400020

Brizmohun, M., Johnston, E., Latifoltojar, A., O'Callaghan, J., Bonet-Carne, E., Ferizi, U., ...Clemente, J. (2018). The intracellular component of VERDICT (Vascular, Extracellular, and Restricted Diffusion for Cytometry in Tumors) MRI distinguishes Gleason 4 pattern better than Apparent Diffusion Coefficient.

Broad, R.J., Gabel, M.C., Dowell, N.G., Schwartzman, D.J., Seth, A.K., Zhang, H., ...Leigh, P.N. (2018). Neurite orientation and dispersion density imaging (NODDI) detects cortical and corticospinal tract degeneration in ALS. Journal of Neurology, Neurosurgery & Psychiatry, doi:10.1136/jnnp-2018-318830

Brown, S., Van Herk, M., Chuter, R., Falk, S., Kirkby, K., Mackay, R., ...Hall, E. (2018). Advanced Radiotherapy Technologies Network in the UK (ART-NET) - focus on lung cancer.

Brusaferri, L., Bousse, A., Efthimiou, N., Emond, E., Atkinson, D., Ourselin, S., ...Thielemans, K. (2018). Potential benefits of incorporating energy information when estimating attenuation from PET data.

Bulgarelli, C., Blasi, A., Arridge, S., Powell, S., de Klerk, C., Southgate, V., ...Hamilton, A. (2018). Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset.. NeuroImage, doi:10.1016/j.neuroimage.2018.04.022

Byrne, L.M., Brogueira Rodrigues, F., Johnson, E., Wijeratne, P., De Vita, E., Alexander, D., ...Scahill, R. (2018). Evaluation of mutant huntingtin and neurofilament proteins as potential markers in Huntington’s disease. Science Translational Medicine, doi:10.1126/scitranslmed.aat7108

Byrne, L.M., Rodrigues, F.B., Johnson, E.B., Wijeratne, P.A., De Vita, E., Alexander, D.C., ...Heslegrave, A. (2018). PARALLEL EVALUATION OF MUTANT HUNTINGTIN AND NEUROFILAMENT LIGHT AS BIOMARKERS FOR HUNTINGTON'S DISEASE: THE HD-CSF STUDY.

Byrne, L.M., Rodrigues, F.B., Johnson, E.B., Wijeratne, P.A., De Vita, E., Alexander, D.C., ...Heslegrave, A. (2018). Parallel Evaluation of Mutant Huntingtin and Neurofilament Light as Biomarkers for Huntington Disease: the HD-CSF Study.

Clancy, N.T., Gurusamy, K., Jones, G., Davidson, B., Clarkson, M., Hawkes, D., Stoyanov, D. (2018). Spectral imaging of thermal damage induced during microwave ablation in the liver.

Davis, S.P.X., Wisniewski, L., Kumar, S., Correia, T., Arridge, S.R., Frankel, P., ...French, P.M.W. (2018). Slice-illuminated optical projection tomography. Optics Letters, 43 (22), 5555-5558. doi:10.1364/OL.43.005555

Deans, C., Griffin, L.D., Marmugi, L., Renzoni, F. (2018). Machine Learning Based Localization and Classification with Atomic Magnetometers. Physical Review Letters, 120 (3), doi:10.1103/PhysRevLett.120.033204

de Jonge, C.S., Gollifer, R.M., Nederveen, A.J., Atkinson, D., Taylor, S.A., Stoker, J., Menys, A. (2018). Dynamic MRI for bowel motility imaging–how fast and how long?. The British Journal of Radiology, 20170845. doi:10.1259/bjr.20170845

Delpiano, J., Pizarro, L., Peddie, C.J., Jones, M.L., Griffin, L.D., Collinson, L.M. (2018). Automated detection of fluorescent cells in in-resin fluorescence sections for integrated light and electron microscopy. Journal of Microscopy, doi:10.1111/jmi.12700

Denholm, R., De Stavola, B., Hipwell, J.H., Doran, S.J., Busana, M.C., Leach, M.O., ...dos-Santos-Silva, I. (2018). Growth Trajectories, Breast Size, and Breast-Tissue Composition in a British Prebirth Cohort of Young Women. AMERICAN JOURNAL OF EPIDEMIOLOGY, 187 (6), 1259-1268. doi:10.1093/aje/kwx358

Denholm, R., De Stavola, B.L., Hipwell, J.H., Doran, S.J., Holly, J.M.P., Folkerd, E., ...Dos-Santos-Silva, I. (2018). Circulating growth and sex hormone levels and breast tissue composition in young nulliparous women. Cancer Epidemiology Biomarkers and Prevention, 27 (12), 1500-1508. doi:10.1158/1055-9965.EPI-18-0036

Devine, W., Giganti, F., Johnston, E., Panagiotaki, E., Punwani, S., Alexander, D., Atkinson, D. (2018). Multi-echo T2 modelling to predict PIRADS 2.0 score.

Devine, W., Giganti, F., Johnston, E., Panagiotaki, E., Punwani, S., Alexander, D.C., Atkinson, D. (2018). Two compartment fitting for Luminal Water Imaging: multi-echo T2 in Prostate Cancer.

Devine, W., Giganti, F., Johnston, E.W., Sidhu, H.S., Panagiotaki, E., Punwani, S., ...Atkinson, D. (2018). Simplified Luminal Water Imaging for the Detection of Prostate Cancer From Multiecho T2 MR Images. Journal of Magnetic Resonance Imaging, doi:10.1002/jmri.26608

Dikaios, N., Giganti, F., Sidhu, H.S., Appayya, M., Johnston, E., Simmons, L., ...Punwani, S. (2018). Multi-parametric MRI zone-specific diagnostic model performance compared with experienced radiologists for detection of prostate cancer. European Radiology, doi:10.1007/s00330-018-5799-y

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Worrall, D., Brostow, G. (2018). CubeNet: Equivariance to 3D Rotation and Translation.

Xiao, G., Bonmati, E., Thompson, S., Evans, J., Hipwell, J., Nikitichev, D., ...Davidson, B. (2018). Electromagnetic tracking in image‐guided laparoscopic surgery: Comparison with optical tracking and feasibility study of a combined laparoscope and laparoscopic ultrasound system. Medical Physics, 45 (11), 5094-5104. doi:10.1002/mp.13210

Young, A.L., Marinescu, R.V., Oxtoby, N.P., Bocchetta, M., Yong, K., Firth, N.C., ...Cardoso, J. (2018). Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference. Nat Commun, 9 (1), 4273. doi:10.1038/s41467-018-05892-0

2017

Alexander, D.C., Dyrby, T.B., Nilsson, M., Zhang, H. (2017). Imaging brain microstructure with diffusion MRI: Practicality and applications. NMR in Biomedicine, doi:10.1002/nbm.3841

Alexander, D.C., Zikic, D., Ghosh, A., Tanno, R., Wottschel, V., Zhang, J., ...Zhang, H. (2017). Image quality transfer and applications in diffusion MRI.. Neuroimage, doi:10.1016/j.neuroimage.2017.02.089

Alfaro-Almagro, F., Jenkinson, M., Bangerter, N.K., Andersson, J.L.R., Griffanti, L., Douaud, G., ...Vallee, E. (2017). Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank.. NeuroImage, doi:10.1016/j.neuroimage.2017.10.034

Andrews, J.T.A., Jaccard, N., Rogers, T.W., Griffin, L.D. (2017). Representation-learning for anomaly detection in complex x-ray cargo imagery.

Arneric, S.P., Cedarbaum, J.M., Khozin, S., Papapetropoulos, S., Hill, D.L., Ropacki, M., ...Gordon, M.F. (2017). Biometric monitoring devices for assessing end points in clinical trials: Developing an ecosystem. Nature Reviews Drug Discovery, 16 (10), 736. doi:10.1038/nrd.2017.153

Bailey, C., Bourne, R.M., Siow, B., Johnston, E.W., Pye, H., Heavey, S., ...Patel, D. (2017). Validation of VERDICT MRI using fresh and fixed prostate specimens with aligned histological slices.

Bailey, C.E.M., Grussu, F., Siow, B., Mertzanidou, T., Hipwell, J.H., Owen, J., ...Hawkes, D.J. (2017). Diffusion anisotropy in breast cancer tissue corresponds to spatial patterns of collagen alignment from structure tensor analysis of histology.

Bastiani, M., Cottaar, M., Dikranian, K., Ghosh, A., Zhang, H., Alexander, D.C., ...Sotiropoulos, S.N. (2017). Improved tractography using asymmetric fibre orientation distributions.. NeuroImage, doi:10.1016/j.neuroimage.2017.06.050

Batalle, D., Hughes, E.J., Zhang, H., Tournier, J.D., Tusor, N., Aljabar, P., ...Nosarti, C. (2017). Early development of structural networks and the impact of prematurity on brain connectivity.. Neuroimage, doi:10.1016/j.neuroimage.2017.01.065

Batalle, D., Zhang, H., O'Muircheartaigh, J., Makropoulos, A., Hughes, E., Barnett, M., ...Edwards, A.D. (2017). Micro- And Macro-Structural Development of the Cortex in Preterm Infants.

Battiston, M., Grussu, F., Ianus, A., Schneider, T., Prados, F., Fairney, J., ...Wheeler-Kingshott, C. (2017). Optimal framework for quantitative Magnetization Transfer imaging of small structures.

Battiston, M., Grussu, F., Ianus, A., Schneider, T., Prados, F., Fairney, J., ...Wheeler-Kingshott, C. (2017). An optimized framework for quantitative Magnetization Transfer imaging of the cervical spinal cord in vivo. Magnetic Resonance in Medicine, doi:10.1002/mrm.26909

Bertolli, O., Arridge, S., Stearns, C.W., Wollenweber, S.D., Hutton, B.F., Thielemans, K. (2017). Data Driven Respiratory signal detection in PET taking advantage of time-of-flight Data.

Bertolli, O., Arridge, S., Wollenweber, S.D., Stearns, C.W., Hutton, B.F., Thielemans, K. (2017). Sign determination methods for the respiratory signal in data-driven PET gating. PHYSICS IN MEDICINE AND BIOLOGY, 62 (8), doi:10.1088/1361-6560/aa6052

Betcke, M.M., Cox, B.T., Huynh, N., Zhang, E.Z., Beard, P.C., Arridge, S.R. (2017). Acoustic Wave Field Reconstruction From Compressed Measurements With Application in Photoacoustic Tomography. IEEE Transactions on Computational Imaging, 3 (4), 710-721. doi:10.1109/TCI.2017.2706029

Bourne, R.M., Bailey, C.E.M., Johnston, E.W., Pye, H., Heavey, S., Whitaker, H., ...Sridhar, A. (2017). Apparatus for histological validation of in vivo and ex vivo magnetic resonance imaging of the human prostate. Frontiers in Oncology, doi:10.3389/fonc.2017.00047

Bousse, A., Manber, R., Holman, B.F., Atkinson, D., Arridge, S., Ourselin, S., ...Thielemans, K. (2017). Evaluation of a direct motion estimation/correction method in respiratory-gated PET/MRI with motion-adjusted attenuation.. Medical physics, doi:10.1002/mp.12253

Bragman, F.J.S., McClelland, J.R., Jacob, J., Hurst, J.R., Hawkes, D.J. (2017). Manifold Learning of COPD.

Bragman, F., McClelland, J., Jacob, J., Hurst, J., Hawkes, D. (2017). Pulmonary Lobe Segmentation with Probabilistic Segmentation of the Fissures and a Groupwise Fissure Prior. IEEE Transactions on Medical Imaging, 1. doi:10.1109/TMI.2017.2688377

Caldwell, M., Ransley, M., Rogers, T.W., Griffin, L.D. (2017). Transferring X-ray based automated threat detection between scanners with different energies and resolution.

Calvert, N., Helo, Y., Mertzanidou, T., Tuch, D.S., Arridge, S., Stoyanov, D. (2017). A Simulation Study of Spectral Cerenkov Luminescence Imaging for Tumour Margin Estimation.

Chouhan, M., Menys, A., Bainbridge, A., Atkinson, D., Punwani, S., Mookerjee, R., Taylor, S. (2017). Cardiac-Induced Liver Deformation as a Measure of Liver Stiffness: Normal Volunteer Reproducibility and Post-Prandial Stress Studies.

Cochran, J.M., Busch, D.R., Ban, H.Y., Kavuri, V.C., Schweiger, M.J., Arridge, S.R., Yodh, A.G. (2017). Multi-modal diffuse optical techniques for breast cancer neoadjuvant chemotherapy monitoring (Conference Presentation).

de Jonge, C.S., Gollifer, R.M., Nederveen, A.J., Atkinson, D., Taylor, S.A., Stoker, J., Menys, A. (2017). Dynamic MRI for bowel motility imaging: How fast and how long?.

de Jonge, C.S., Gollifer, R.M., Nederveen, A.J., Atkinson, D., Taylor, S.A., Stoker, J., Menys, A. (2017). Dynamic MRI for bowel motility imaging – how fast and how long?.

Devine, W., Johnston, E., Bonet-Carne, E., Punwani, S., Alexander, D., Atkinson, D. (2017). Linking a Multi-Compartment T2 Model to Diffusion Microstructure in Prostate Cancer.

Dikaios, N., Atkinson, D., Tudisca, C., Purpura, P., Forster, M., Ahmed, H., ...Punwani, S. (2017). A comparison of Bayesian and non-linear regression methods for robust estimation of pharmacokinetics in DCE-MRI and how it affects cancer diagnosis. Computerized Medical Imaging and Graphics, 56 1-10. doi:10.1016/j.compmedimag.2017.01.003

Dikaios, N., Daniels, C., Gallagher, F., O'Callaghan, J., Atkinson, D., Punwani, S. (2017). Quantitative Analysis of Hyperpolarized [1-13C]pyruvate Metabolic Kinetics Using Bayesian Inference Algorithms.

Donaldson, I., Hamid, S., Barratt, D., Hu, Y., Rodell, R., Villarini, B., ...McCartan, N. (2017). THE SMARTTARGET BIOPSY TRIAL: A PROSPECTIVE PAIRED BLINDED TRIAL WITH RANDOMISATION TO COMPARE VISUAL-ESTIMATION AND IMAGE-FUSION TARGETED PROSTATE BIOPSIES.

Doran, S.J., Hipwell, J.H., Denholm, R., Eiben, B., Busana, M., Hawkes, D.J., ...Dos Santos Silva, I. (2017). Breast MRI segmentation for density estimation: Do different methods give the same results and how much do differences matter?. Medical physics, doi:10.1002/mp.12320

Durrant, J., Brostow, G. (2017). Seam-hiding for looping videos.

Eiben, B., Fast, M.F., Menten, M.J., Bromma, K., Wetscherek, A., Hawkes, D.J., ...Oelfke, U. (2017). Automated lung tumour delineation in cine MR images for image guided radiotherapy with an MR-Linac.

Eshaghi, A., Marinescu, R.V., Young, A., Firth, N., Prados, F., Cardoso, M.J., ...Brownlee, W. (2017). Progression of regional grey matter atrophy in multiple sclerosis.

Farina, A., Betcke, M., Di Sieno, L., Bassi, A., Ducros, N., Pifferi, A., ...D 'Andrea, C. (2017). Diffuse Optical Tomography based on time-resolved compressive sensing.

Farina, A., Betcke, M., di Sieno, L., Bassi, A., Ducros, N., Pifferi, A., ...D'Andrea, C. (2017). Multiple-view diffuse optical tomography system based on time-domain compressive measurements. OPTICS LETTERS, 42 (14), 2822-2825. doi:10.1364/OL.42.002822

Farina, A., Betcke, M., Ducros, N., di Sieno, L., Bassi, A., Pifferi, A., ...D'Andrea, C. (2017). Multiple-view time-resolved diffuse optical tomography based on structured illumination and compressive detection.

Farina, A., Tagliabue, S., Di Sieno, L., Martinenghi, E., Durduran, T., Arridge, S., ...Dalla Mora, A. (2017). Time-Domain Functional Diffuse Optical Tomography System Based on Fiber-Free Silicon Photomultipliers. Applied Sciences, 7 (12), doi:10.3390/app7121235

Fast, M.F., Eiben, B., Menten, M.J., Wetscherek, A., Hawkes, D.J., McClelland, J.R., Oelfke, U. (2017). Tumour auto-contouring on 2d cine MRI for locally advanced lung cancer: A comparative study. Radiotherapy and Oncology, doi:10.1016/j.radonc.2017.09.013

Ferizi, U., Scherrer, B., Schneider, T., Alipoor, M., Eufracio, O., Fick, R.H.J., ...Rivera, M. (2017). Diffusion MRI microstructure models with in vivo human brain Connectome data: Results from a multi-group comparison. NMR in Biomedicine, doi:10.1002/nbm.3734

Fonseca, M., Malone, E., Lucka, F., Ellwood, R., An, L., Arridge, S., ...Cox, B. (2017). Three-dimensional photoacoustic imaging and inversion for accurate quantification of chromophore distributions.

Franco, G., Li, H., Kaden, E., Alexander, D.C., Gore, J.C., Dortch, R., ...Bagnato, F. (2017). Probing myelin and axonal integrity in multiple sclerosis brains.

Gabel, M., Broad, R., Alexander, D., Zhang, H., Leigh, N., Cercignani, M. (2017). Understanding White Matter Pathology in ALS Using a Multimodal Approach.

Ganepola, T., Nagy, Z., Alexander, D.C., Sereno, M.I. (2017). An unsupervised group average cortical parcellation using diffusion MRI to probe cytoarchitecture.

Ganepola, T., Nagy, Z., Ghosh, A., Papadopoulo, T., Alexander, D.C., Sereno, M.I. (2017). Using diffusion MRI to discriminate areas of cortical grey matter.. NeuroImage, doi:10.1016/j.neuroimage.2017.12.046

Gibson, E., Robu, M.R., Thompson, S., Edwards, P., Schneider, C., Gurusamy, K., ...Clarkson, M.J. (2017). Deep residual networks for automatic segmentation of laparoscopic videos of the liver.

Godard, C., Mac Aodha, O., Brostow, G.J. (2017). Unsupervised Monocular Depth Estimation with Left-Right Consistency.

Gollifer, R., Menys, A., Makanyanga, J., Puylaert, C., Vos, F., Stoker, J., ...Taylor, S. (2017). Analysis of Motility in Apparently Normal Small Bowel – Relationship to Crohn’s Symptoms.

Gollifer, R., Menys, A., Plumb, A., Vos, F.M., Stoker, J., Taylor, S.A., Atkinson, D. (2017). Magnetic resonance imaging assessed small bowel dysmotility and its relationship with patient reported symptoms: An exploration of automated vs subjective assessment techniques.

Griffin, L.D. (2017). The Atlas Structure of Images. IEEE Transactions on Pattern Analysis and Machine Intelligence, doi:10.1109/TPAMI.2017.2777856

Griffin, L., Mylonas, D. (2017). Why so Much Talk About Red?.

Grussu, F., Battiston, M., Prados Carrasco, F., Schneider, T., Kaden, E., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). A unified signal readout for reproducible multimodal characterisation of brain microstructure.

Grussu, F., Battiston, M., Prados Carrasco, F., Schneider, T., Kaden, E., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). Whole-brain macromolecular tissue volume mapping: a comparison of imaging readouts at 3 Tesla.

Grussu, F., Ianus, A., Tur Gomez, C., Prados Carrasco, F., Schneider, T., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). Origin of the time dependence of the diffusion-weighted signal in spinal cord white matter.

Grussu, F., Schneider, T., Tur, C., Yates, R.L., Tachrount, M., Ianuş, A., ...Alexander, D.C. (2017). Neurite dispersion: A new marker of multiple sclerosis spinal cord pathology?. Annals of Clinical and Translational Neurology, doi:10.1002/acn3.445

Hampshire, T., Menys, A., Jaffer, A., Bhatnagar, G., Punwani, S., Atkinson, D., ...Taylor, S.A. (2017). A Probabilistic Method for Estimation of Bowel Wall Thickness in MR Colonography.. PLoS One, 12 (1), e0168317. doi:10.1371/journal.pone.0168317

Han, L., Dong, H., McClelland, J.R., Han, L., Hawkes, D.J., Barratt, D.C. (2017). A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs. MEDICAL IMAGE ANALYSIS, 39 87-100. doi:10.1016/j.media.2017.04.003

Hauptmann, A., Lucka, F., Betcke, M.M., Huynh, N., Cox, B.T., Beard, P.C., ...Arridge, S.R. (2017). Model based learning for accelerated, limited-view 3D photoacoustic tomography.. .

Huynh, N., Lucka, F., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2017). Sub-sampled Fabry-Perot photoacoustic scanner for fast 3D imaging.

Ianuş, A., Shemesh, N., Alexander, D.C., Drobnjak, I. (2017). Measuring microscopic anisotropy with diffusion magnetic resonance: From material science to biomedical imaging. In Mathematics and Visualization. (pp. 229-255). .

Ilisescu, C., Kanaci, A., Romagnoli, M., Campbell, N.D.F., Brostow, G.J. (2017). Responsive Action-based Video Synthesis.

Intharah, T., Turmukhambetov, D., Brostow, G.J. (2017). Help, it looks confusing: GUI task automation through demonstration and follow-up questions.

Jaccard, N., Rogers, T.W., Morton, E.J., Griffin, L.D. (2017). Detection of concealed cars in complex cargo X-ray imagery using Deep Learning. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY, 25 (3), 323-339. doi:10.3233/XST-16199

Jaccard, N., Szita, N., Griffin, L.D. (2017). Segmentation of phase contrast microscopy images based on multi-scale local Basic Image Features histograms. Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization, 5 (5), 359-367. doi:10.1080/21681163.2015.1016243

Jacobs, J.G., Brostow, G.J., Freeman, A., Alexander, D.C., Panagiotaki, E. (2017). Deep Learning for Quantifiable Characterisation of Prostate Histology with Limited Data.

Jacobs, J.G., Brostow, G.J., Freeman, A., Alexander, D.C., Panagiotaki, E. (2017). Detecting and Classifying Nuclei on a Budget.

Johnston, E., Antonelli, M., Dikaios, N., Ourselin, S., Atkinson, D., Punwani, S. (2017). Improving the Reproducibility of Quantitative Imaging Metrics for Multicentre Multiparametric Prostate MRI Trials.

Johnston, E., Bailey, C., Bonet-Carne, E., Pye, H., Heavey, S., Patel, D., ...Devine, W. (2017). Why is the Peripheral Zone of the Normal Human Prostate High in ADC Value and T2-Weighted Signal Intensity?.

Johnston, E., Bonet-Carne, E., Pye, H., Clemente, J., Yvernault, B., Patel, D., ...Sridhar, A. (2017). Microstructural Diffusion-Weighted (VERDICT) MRI Metrics are Repeatable and Show Potential at Characterising Gleason 7 Prostate Cancer Non-Invasively.

Jones, G., Clancy, N., Helo, Y., Arridge, S., Elson, D., Stoyanov, D. (2017). Bayesian Estimation of Intrinsic Tissue Oxygenation and Perfusion from RGB Images.. IEEE Trans Med Imaging, doi:10.1109/TMI.2017.2665627

Jones, G., Clancy, N.T., Du, X., Robu, M., Arridge, S.R., Elson, D.S., Stoyanov, D. (2017). Fast Estimation of Haemoglobin Concentration in Tissue Via Wavelet Decomposition.. MICCAI (2), 10434 100-108. doi:10.1007/978-3-319-66185-8_12

Kakkar, L.S., Atkinson, D., Chan, R.W., Siow, B., Ianus, A., Drobnjak, I. (2017). Sensitivity of OGSE activeax to microstructural dimensions on a clinical scanner.

Keenan, K.E., Ainslie, M., Barker, A.J., Boss, M.A., Cecil, K.M., Charles, C., ...Finn, P. (2017). Quantitative magnetic resonance imaging phantoms: A review and the need for a system phantom. Magnetic Resonance in Medicine, 79 (1), 48-61. doi:10.1002/mrm.26982

Kelly, C.J., Makropoulos, A., Cordero-Grande, L., Hutter, J., Price, A., Hughes, E., ...Kulkarni, S. (2017). Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery. SCIENTIFIC REPORTS, 7 doi:10.1038/s41598-017-14939-z

Kowalik, G., Steeden, J., Atkinson, D., Mortensen, K., Muthurangu, V. (2017). Golden Step, Golden Angle, Spiral-Cartesian Imaging for Flexible Gated Three-Dimensional Angiography.

Lacher, R.M., V.a.s.c.o.n.c.e.l.o.s., B.i.s.h.o.p., W.i.l.l.i.a.m.s., K.e.s.h.t.g.a.r., H.a.w.k.e.s., ......S.t.o.y.a.n.o.v. (2017). A comparative study of breast surface reconstruction for aesthetic outcome assessment.

Lorenzi, M., Gutman, B., Thompson, P.M., Alexander, D.C., Ourselin, S., Altmann, A. (2017). Secure multivariate large-scale multi-centric analysis through on-line learning: an imaging genetics case study.

Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alexander, D.C. (2017). A vertex clustering model for disease progression: Application to cortical thickness images.

Markiewicz, P.J., Ehrhardt, M., Erlandsson, K., Noonan, P.J., Barnes, A., Schott, J.M., ...Ourselin, S. (2017). NiftyPET: A high-throughput software platform for high quantitative accuracy and precision PET imaging and analysis. Neuroinformatics, doi:10.1007/s12021-017-9352-y

McClelland, J.R., Modat, M., Arridge, S., Grimes, H., D'Souza, D., Thomas, D., ...Collins, D. (2017). A generalized framework unifying image registration and respiratory motion models and incorporating image reconstruction, for partial image data or full images.. Physics in Medicine and Biology, doi:10.1088/1361-6560/aa6070

Melbourne, A., Pratt, R., Owen, D., Sokolska, M., Bainbridge, A., Atkinson, D., ...David, A. (2017). DECIDE: Diffusion-RElaxation Combined Imaging for Detailed Placental Evaluation.

Melbourne, A., Pratt, R., Sokolska, M., Owen, D., Bainbridge, A., Atkinson, D., ...David, A. (2017). SEPARATION OF FETAL AND MATERNAL CIRCULATIONS USING MULTI-MODAL MRI.

Menys, A., Keszthelyi, D., Fitzke, H., Fikree, A., Atkinson, D., Aziz, Q., Taylor, S. (2017). A magnetic resonance imaging study of gastric motor function in patients with dyspepsia associated with Ehlers-Danlos Syndrome-Hypermobility Type: A feasibility study. Neurogastroenterology and Motility, 29 (9), doi:10.1111/nmo.13090

Mertzanidou, T., Hipwell, J.H., Reis, S., Hawkes, D.J., Bejnordi, B.E., Dalmis, M., ...Karssemeijer, N. (2017). 3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging. Med Phys, doi:10.1002/mp.12077

Mylonas, D., Andrews, J., Griffin, L. (2017). Variability in Free Colour Naming Across the Full Colour Gamut.

Nedjati-Gilani, G.L., Schneider, T., Hall, M.G., Cawley, N., Hill, I., Ciccarelli, O., ...Alexander, D.C. (2017). Machine learning based compartment models with permeability for white matter microstructure imaging. NeuroImage, 150 119-135. doi:10.1016/j.neuroimage.2017.02.013

Oxtoby, N.P., Alexander, D.C. (2017). Imaging plus X: multimodal models of neurodegenerative disease.. Current opinion in neurology, doi:10.1097/wco.0000000000000460

Oxtoby, N.P., Garbarino, S., Firth, N.C., Warren, J.D., Schott, J.M., Alexander, D.C. (2017). Data-Driven Sequence of Changes to Anatomical Brain Connectivity in Sporadic Alzheimer's Disease. FRONTIERS IN NEUROLOGY, 8 doi:10.3389/fneur.2017.00580

Palmer, L., Bialkowski, A., Brostow, G.J., Ambeck-Madsen, J., Lavie, N. (2017). Predicting the Perceptual Demands of Urban Driving with Video Regression.

Pavisic, I.M., Firth, N.F., Parsons, S., Martinez Rego, D., Shakespeare, T.J., Yong, K.X.X., ...Macpherson, K. (2017). Eyetracking Metrics in Young Onset Alzheimer’s Disease: A Window into Cognitive Visual Functions. Frontiers in Neurology,

Pecheva, D., Yushkevich, P., Batalle, D., Hughes, E., Aljabar, P., Wurie, J., ...Counsell, S.J. (2017). A tract-specific approach to assessing white matter in preterm infants.. NeuroImage, doi:10.1016/j.neuroimage.2017.04.057

Pecheva, D., Zhang, H., Barnett, M., Chew, A., Falconer, S., Rutherford, M., ...Edwards, A.D. (2017). White Matter Diffusion Properties at Term Equivalent Age Are Associated with Subsequent Motor Performance in Infants Born Preterm.

Powell, S., Hochuli, R., Arridge, S. (2017). Radiance Monte-Carlo for application of the radiative transport equation in the inverse problem of diffuse optical tomography.

Pratt, R., Melbourne, A., Owen, D., Sokolska, M., Bainbridge, A., Atkinson, D., ...David, A.L. (2017). OP05.08: Novel placental evaluation using multimodal MRI.

Primativo, S., Clark, C., Yong, K.X.X., Firth, N.C., Nicholas, J., Alexander, D., ...Crutch, S.J. (2017). Eyetracking metrics reveal impaired spatial anticipation in behavioural variant frontotemporal dementia. Neuropsychologia, 106 328-340. doi:10.1016/j.neuropsychologia.2017.10.014

Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2017). Estimation and uncertainty quantification of optical properties directly from the photoacoustic time series.

Ramalhinho, J., Robu, M., Thompson, S., Edwards, P., Schneider, C., Gurusamy, K., ...Clarkson, M.J. (2017). Breathing motion compensated registration of laparoscopic liver ultrasound to CT.

Reed, Z., Newell, A., Oliver, B., Griffin, L., Davis, O. (2017). Early handwriting style has both genetic and environmental origins.

Reis, S., Gazinska, P., Hipwell, J., Mertzanidou, T., Naidoo, K., Williams, N., ...Hawkes, D.J. (2017). Automated Classification of Breast Cancer Stroma Maturity from Histological Images.. IEEE Trans Biomed Eng, doi:10.1109/TBME.2017.2665602

Rickman, J., Duellberg, C., Cade, N.I., Griffin, L.D., Surrey, T. (2017). Steady-state EB cap size fluctuations are determined by stochastic microtubule growth and maturation. Proceedings of the National Academy of Sciences of the United States of America, 114 (13), 3427-3432. doi:10.1073/pnas.1620274114/

Roberts, T., Hyare, H., Hipwell, J., Ianus, A., Breen-Norris, J., Panagiotaki, E., ...Brandner, S. (2017). Quantifying Microstructure in Low and High-Grade Brain Tumours Using VERDICT MRI.

Robu, M.R., Edwards, P., Ramalhinho, J.A., Thompson, S., Davidson, B., Hawkes, D., ...Clarkson, M.J. (2017). Intelligent viewpoint selection for efficient CT to video registration in laparoscopic liver surgery. International Journal of Computer Assisted Radiology and Surgery, 1-10. doi:10.1007/s11548-017-1584-7

Rogers, T.W., Jaccard, N., Griffin, L.D. (2017). A deep learning framework for the automated inspection of complex dual-energy x-ray cargo imagery.

Rogers, T.W., Jaccard, N., Protonotarios, E.D., Ollier, J., Morton, E.J., Griffin, L.D. (2017). Threat Image Projection (TIP) into X-ray images of cargo containers for training humans and machines.

Rogers, T.W., Ollier, J., Morton, E.J., Griffin, L.D. (2017). Measuring and correcting wobble in large-scale transmission radiography. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY, 25 (1), 57-77. doi:10.3233/XST-160607

Rojas Villabona, A., Benedetta Pizzini, F., Solbach, T., Ricciardi, G., Sokolska, M., Lemonis, C., ...Foroni, R. (2017). Triple Magnetic Resonance Angiography (Triple-MRA) for Confirmation of Obliteration Following Gamma Knife Radiosurgery for Arterial-Venous Malformations of the Brain.

Rojas Villabona, A., Sokolska, M., De Vita, E., Murphy, M., Solbach, T., Grieve, J., ...Atkinson, D. (2017). Triple Magnetic Resonance Angiography (Triple-MRA) for Planning of Gamma Knife Radiosurgery of Brain Arteriovenous Malformations.

Sari, H., Erlandsson, K., Law, I., Larsson, H., Ourselin, S., Arridge, S., ...Hutton, B. (2017). Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel partial volume correction method. Journal of Cerebral Blood Flow & Metabolism, 37 (4), 1398-1409. doi:10.1177/0271678X16656197

Schneider, C., Johnson, S.P., Gurusamy, K., Cook, R.J., Desjardins, A.E., Hawkes, D.J., ...Walker-Samuel, S. (2017). Identification of liver metastases with probe-based confocal laser endomicroscopy at two excitation wavelengths.. Lasers Surg Med, doi:10.1002/lsm.22617

Shinoda, S., Worrall, D.E., Brostow, G.J. (2017). Virtual Adversarial Ladder Networks For Semi-supervised Learning.

Simmons, L.A.M., Kanthabalan, A., Arya, M., Briggs, T., Barratt, D., Charman, S.C., ...Hu, Y. (2017). The PICTURE study: diagnostic accuracy of multiparametric MRI in men requiring a repeat prostate biopsy. British Journal of Cancer, doi:10.1038/bjc.2017.57

Slator, P., Hutter, J., McCabe, L., Dos Santos Gomes, A., Price, A.N., Panagiotaki, E., ...Alexander, D.C. (2017). Placenta microstructure and microcirculation imaging with diffusion MRI. Magnetic Resonance in Medicine, doi:10.1002/mrm.27036

Slator, P.J., Hutter, J., McCabe, L., Dos Santos Gomes, A., Price, A., Panagiotaki, E., ...Alexander, D.C. (2017). Quantifying Placental Microcirculation and Microstructure with Anisotropic IVIM Models.

Slator, P.J., Hutter, J., McCabe, L., Dos Santos Gomes, A., Price, A., Rutherford, M., ...Alexander, D. (2017). Comparison of Diffusion Imaging Microstructure Models of the Human Placenta at 3T.

Slattery, C.F., Zhang, J., Paterson, R.W., Foulkes, A.J.M., Carton, A., Macpherson, K., ...Toussaint, N. (2017). ApoE influences regional white-matter axonal density loss in Alzheimer's disease. Neurobiology of Aging, 57 8-17. doi:10.1016/j.neurobiolaging.2017.04.021

Tagliabue, S., Di Sieno, L., Farina, A., Martinenghi, E., Arridge, S., Martelli, F., ...Dalla Mora, A. (2017). Near-infrared, time-resolved optical tomography with a novel compact system.

Tanno, R., Worrall, D.E., Ghosh, A., Kaden, E., Sotiropoulos, S.N., Criminisi, A., Alexander, D.C. (2017). Bayesian image quality transfer with CNNs: Exploring uncertainty in dMRI super-resolution. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10433 LNCS 611-619. doi:10.1007/978-3-319-66182-7_70

Tarvainen, T., Pulkkinen, A., Cox, B.T., Arridge, S.R. (2017). Utilising the radiative transfer equation in quantitative photoacoustic tomography.

Thompson, S., Meurer, Y., Edwards, E., Ramalhinho, J., Robu, M.R., Stoyanov, D., ...Clarkson, M.J. (2017). On pattern selection for laparoscope calibration.

Tsai, Y.J., Bousse, A., Ehrhardt, M.J., Stearns, C.W., Ahn, S., Hutton, B., ...Thielemans, K. (2017). Fast Quasi-Newton Algorithms for Penalized Reconstruction in Emission Tomography and Further Improvements via Preconditioning. IEEE Transactions on Medical Imaging, doi:10.1109/TMI.2017.2786865

Tsai, Y.J., Bousse, A., Stearns, C.W., Ahn, S., Hutton, B.F., Arridge, S., Thielemans, K. (2017). Performance improvement and validation of a new MAP reconstruction algorithm.

Vavourakis, V., Wijeratne, P.A., Shipley, R., Loizidou, M., Stylianopoulos, T., Hawkes, D.J. (2017). A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth.. PLOS Computational Biology, 13 (1), e1005259. doi:10.1371/journal.pcbi.1005259

Veiga, C.I.C.V.D., Landau, D., McClelland, J., Ledermann, J., Hawkes, D., Janes, S., Devaraj, A. (2017). Long term radiological features of radiation-induced lung damage. Radiotherapy and Oncology, doi:10.1016/j.radonc.2017.11.003

Veiga, C., Landau, D., Devaraj, A., Doel, T., Hawkes, D., McClelland, J. (2017). Quantification of Radiation Therapy-Induced Diaphragmatic Changes Using Serial CT Imaging.

Veiga, C., Landau, D., Devaraj, A., Doel, T., Hawkes, D., Mcclelland, J. (2017). Toward a Radiological Scoring System of Radiotherapy-Induced Lung Damage.

Veiga, C., Landau, D., Devaraj, A., Doel, T., Hawkes, D., McClelland, J.R. (2017). Quantification of radiotherapy-induced mediastinum changes using serial CT imaging.

Wijeratne, P.A., Hipwell, J.H., Hawkes, D.J., Stylianopoulos, T., Vavourakis, V. (2017). Multiscale biphasic modelling of peritumoural collagen microstructure: The effect of tumour growth on permeability and fluid flow.. PloS one, 12 (9), e0184511. doi:10.1371/journal.pone.0184511

Worrall, D.E., Garbin, S.J., Turmukhambetov, D., Brostow, G.J. (2017). Interpretable Transformations with Encoder-Decoder Networks.

Worrall, D.E., G.a.r.b.i.n., T.u.r.m.u.k.h.a.m.b.e.t.o.v., Brostow, G.J. (2017). Harmonic Networks: Deep Translation and Rotation Equivariance.

Yang, G., Yu, S., Dong, H., Slabaugh, G., Dragotti, P.L., Ye, X., ...Guo, Y. (2017). DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction. IEEE Transactions on Medical Imaging, doi:10.1109/TMI.2017.2785879

Zhang, J., Slattery, C., Paterson, R., Foulkes, A., Mancini, L., Thomas, D., ...Thornton, J. (2017). Longitudinal Progression of White Matter Deficits in Young Onset Alzheimer's Disease and Its Syndromic Variants Using NODDI.

2016

Al Awabdh, S., Gupta-Agarwal, S., Sheehan, D.F., Muir, J., Norkett, R., Twelvetrees, A.E., ...Kittler, J.T. (2016). Neuronal activity mediated regulation of glutamate transporter GLT-1 surface diffusion in rat astrocytes in dissociated and slice cultures.. Glia, 64 (7), 1252-1264.

Andrews, J., Morton, E.J., Griffin, L.D. (2016). Detecting Anomalous Data Using Auto-Encoders.

Andrews, J., Tanay, T., Morton, E.J., Griffin, L.D. (2016). Transfer representation-learning for anomaly detection.

Arridge, S., Beard, P., Betcke, M., Cox, B., Huynh, N., Lucka, F., ...Zhang, E. (2016). Accelerated high-resolution photoacoustic tomography via compressed sensing.. Phys Med Biol, 61 (24), 8908-8940. doi:10.1088/1361-6560/61/24/8908

arridge, S., betcke, M., Cox, B.T., Lucka, F., Treeby, B. (2016). On the Adjoint Operator in Photoacoustic Tomography. Inverse Problems, doi:10.1088/0266-5611/32/11/115012

Arridge, S.R., Schweiger, M., Schotland, J.C. (2016). Inverse models of light transport. In Handbook of Biomedical Optics. (pp. 337-358). .

Bailey, C.E.M., Siow, B., Panagiotaki, E., Hipwell, J.H., Mertzanidou, T., Owen, J., ...Hawkes, D.J. (2016). Microstructure models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study. NMR in Biomedicine, doi:10.1002/nbm.3679

Bailey, C.E.M., Siow, B., Panagiotaki, E., Hipwell, J.H., Pinder, S.E., Alexander, D.C., Hawkes, D.J. (2016). Microstructure models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study.

Baki, M.M., Menys, A., Atkinson, D., Bassett, P., Morley, S., Beale, T., ...Birchall, M.A. (2016). Feasibility of vocal fold abduction and adduction assessment using cine-MRI. European Radiology, 1-9. doi:10.1007/s00330-016-4341-3

Ban, H.Y., Schweiger, M.J., Kavuri, V.C., Cochran, J.M., Xie, L., Busch, D., ...Lee, K. (2016). Heterodyne frequency-domain multispectral diffuse opticaltomography of breast cancer in the parallel-planetransmission geometry. Medical Physics, 43 (7),

Barkhof, F., Llufriu, S., Rovira, A., Gass, A., Gasperini, C., Kitzler, H., ...Wattjes, M. (2016). Creating a consensus evaluation and expert opinion reporting platform for brain MRI in Multiple Sclerosis with higher increased risk of Progressive Multifocal Leukoencephalopathy..

Bertolli, O., Arridge, S., Stearns, C.W., Wollenweber, S.D., Hutton, B.F., Thielemans, K. (2016). Sign determination methods for the respiratory signal in data-driven PET gating.

Bonet-Carne, E., Daducci, A., Panagiotaki, E., Johnston, E., Stevens, N., Atkinson, D., ...Alexander, D. (2016). AMICO-VERDICT: Ultrafast fitting algorithm for cancer microstructure characterization, a prostate cancer application.

Bonet-Carne, E., Daducci, A., Panagiotaki, E., Johnston, E., Stevens, N., Atkinson, D., ...Alexander, D.C. (2016). Non-invasive quantification of prostate cancer using AMICO framework for VERDICT MRI.

Bonet-Carne, E., Johnston, E., Daducci, A., Saborowska, A., Atkinson, D., Punwani, S., ...Panagiotaki, E. (2016). Non-invasive quantification of prostate cancer with VERDICT MRI: A repeatability study.

Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F., Thielemans, K. (2016). Maximum-likelihood joint image reconstruction and motion estimation with misaligned attenuation in TOF-PET/CT. PHYSICS IN MEDICINE AND BIOLOGY, 61 (3), L11-L19. doi:10.1088/0031-9155/61/3/L11

Bray, T.J.P., Vendhan, K., Ambrose, N., Atkinson, D., Punwani, S., Fisher, C., ...Hall-Craggs, M. (2016). Diffusion-weighted imaging is a sensitive biomarker of response to biologic therapy in enthesitis-related arthritis. Rheumatology, 56 (3), 399-407. doi:10.1093/rheumatology/kew429

Bray, T.J.P., Vendhan, K., Atkinson, D., Fisher, C., Sen, D., Ioannou, Y., Hall-Craggs, M.A. (2016). THE NATURAL HISTORY OF SACROILIITIS IN YOUNG PEOPLE WITH ENTHESITIS-RELATED ARTHRITIS ON BIOLOGIC THERAPY.

Bray, T.J.P., Vendhan, K., Atkinson, D., Punwani, S., Fisher, C., Sen, D., ...Hall-Craggs, M.A. (2016). QUANTIFICATION OF SACROILIAC JOINT INFLAMMATION USING DIFFUSION-WEIGHTED IMAGING IN YOUNG PEOPLE: BIOLOGICAL VALIDATION IN ENTHESITIS-RELATED ARTHRITIS.

Bray, T.J.P., Vendhan, K., Atkinson, D., Punwani, S., Fisher, C., Sen, D., ...Hall-Craggs, M.A. (2016). QUANTITATIVE APPARENT DIFFUSION COEFFICIENT MEASUREMENTS ARE A MORE REPEATABLE MEASURE OF SACROILIITIS THAN VISUAL SCORING IN YOUNG PEOPLE WITH ENTHESITIS-RELATED ARTHRITIS.

Bray, T., Vendhan, K., Ambrose, N., Atkinson, D., Punwani, S., Fisher, C., ...Hall-Craggs, M. (2016). The Apparent Diffusion Coefficient as a quantitative imaging biomarker of therapeutic response in enthesitis-related arthritis.

Bray, T., Vendhan, K., Atkinson, D., Fischer, C., Sen, D., Ioannou, Y., Hall-Craggs, M. (2016). The natural history of enthesitis-related arthritis on biologic therapy.

Bray, T., Vendhan, K., Atkinson, D., Punwani, S., Fischer, C., Sen, D., ...Hall-Craggs, M.A. (2016). Quantitative Apparent Diffusion Coefficient measurements are a more repeatable measure of sacroiliitis than visual scoring.

Bray, T., Vendhan, K., Atkinson, D., Punwani, S., Fischer, C., Sen, D., ...Hall-Craggs, M.A. (2016). Quantification of inflammation using Diffusion-weighted Imaging: Biological validation in enthesitis-related arthritis.

Bray, T., Vendhan, K., Roberts, J., Atkinson, D., Punwani, S., Sen, D., ...Hall-Craggs, M.A. (2016). Association of the Apparent Diffusion Coefficient with maturity in adolescent sacroiliac joints. Journal of Magnetic Resonance Imaging, doi:10.1002/jmri.25209

Broad, R., Gabel, M., Dowell, N., Zhang, G., Alexander, D., Cercignani, M., Leigh, P.N. (2016). CORRELATION ANALYSIS OF NEURITE ORIENTATION DISPERSION & DENSITY IMAGING IN MND.

Bufacchi, R.J., Liang, M., Griffin, L.D., Iannetti, G.D. (2016). A geometric model of defensive peripersonal space. JOURNAL OF NEUROPHYSIOLOGY, 115 (1), 218-225. doi:10.1152/jn.00691.2015

Chouhan, M.D., Bainbridge, A., Atkinson, D., Punwani, S., Mookerjee, R., Lythgoe, M.F., Taylor, S.A. (2016). Estimation of contrast agent bolus arrival delays for improved reproducibility of liver DCE MRI. Phys Med Biol, doi:10.1088/0031-9155/61/19/6905

Chouhan, M.D., Bainbridge, A., Atkinson, D., Punwani, S., Mookerjee, R., Lythgoe, M., Taylor, S. (2016). Improved hepatic arterial fraction estimation using cardiac output correction of arterial input functions for liver DCE MRI.. Phys Med Biol, doi:10.1088/1361-6560/aa553c

Cochran, J.M., Ban, H.Y., Busch, D.R., Schweiger, M.J., Kavuri, V.C., Pathak, S., ...Yodh, A.G. (2016). Multimodal structural priors for spatially-dense diffuse optical tomography of breast cancer.

Colgan, N., Siowa, B., O'Callaghan, J.M., Harrison, I.F., Wells, J.A., Holmes, H.E., ...Collins, E.C. (2016). Application of neurite orientation dispersion and density imaging (NODDI) to a tau pathology model of Alzheimer's disease. NEUROIMAGE, 125 739-744. doi:10.1016/j.neuroimage.2015.10.043

Correia, T., Arridge, S. (2016). Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography-part 1: technical principles. PHYSICS IN MEDICINE AND BIOLOGY, 61 (4), 1439-1451. doi:10.1088/0031-9155/61/4/1439

Correia, T., Koch, M., Ale, A., Ntziachristos, V., Arridge, S. (2016). Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography-part 2: image reconstruction. PHYSICS IN MEDICINE AND BIOLOGY, 61 (4), 1452-1475. doi:10.1088/0031-9155/61/4/1452

Cruz, G., Atkinson, D., Henningsson, M., Botnar, R., Prieto, C. (2016). Highly efficient nonrigid motion corrected 3D whole-heart coronary vessel wall imaging. Magnetic Resonance in Medicine, 77 (5), 1894-1908. doi:10.1002/mrm.26274

Cruz, G., Atkinson, D., Henningsson, M., Botnar, R., Prieto, C. (2016). Highly effcient nonrigid motion corrected 3D whole-heart coronary vessel lumen and wall imaging.

Denholm, R., De Stavola, B., Hipwell, J.H., Doran, S.J., Busana, M.C., Eng, A., ...Dos Santos Silva, I. (2016). Pre-natal exposures and breast tissue composition: findings from a British pre-birth cohort of young women and a systematic review.. Breast Cancer Res, 18 (1), 102. doi:10.1186/s13058-016-0751-z

Devine, W., Johnston, E., Bonet-Carne, E., Punwani, S., Alexander, D.C., Atkinson, D. (2016). Microstructure prostate cancer heterogeneity using diffusivity distributions.

Dikaios, N., Johnston, E., Ahmed, H., Simmons, L., Freeman, A., Allen, C., ...Punwani, S. (2016). Validation of a diagnostic transition zone prostate cancer model trained in a 1.5T MRI scanner on an independent cohort of patientsscanned on a 3T MRI scaner.

Dikaios, N., Punwani, S., Gutte, H., Larsen, M., Kristensen, A., Kjær, A., ...Hansen, A.E. (2016). Kinetic modelling of hyperpolarized 13C-pyruvate metabolism in Canines using a model-based input function.

Drobnjak, I., Zhang, H., Ianus, A., Kaden, E., Alexander, D.C. (2016). PGSE, OGSE, and Sensitivity to Axon Diameter in Diffusion MRI: Insight from a Simulation Study. MAGNETIC RESONANCE IN MEDICINE, 75 (2), 688-700. doi:10.1002/mrm.25631

Ducros, N., Correia, T., Bassi, A., Valentini, G., Arridge, S., Cosimo, D. (2016). Reconstruction of an optical inhomogeneity map improves fluorescence diffuse optical tomography. Biomedical Physics and Engineering Express, 2 (5), doi:10.1088/2057-1976/2/5/055020

Du, X., Allan, M., Dore, A., Ourselin, S., Hawkes, D., Kelly, J.D., Stoyanov, D. (2016). Combined 2D and 3D tracking of surgical instruments for minimally invasive and robotic-assisted surgery. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 11 (6), 1109-1119. doi:10.1007/s11548-016-1393-4

Eaton-Rosen, Z., Melbourne, A., Beckmann, J., Orasanu, E., Stevens, N., Atkinson, D., ...Ourselin, S. (2016). White matter alterations in young adults born extremely preterm: a microstructural point of view.

Ebner, M., Chouhan, M.C., Patel, P.A., Atkinson, D.A., Amin, Z.A., Read, S.R., ...Ourselin, S.O. (2016). Point-Spread-Function-Aware Slice-to-Volume Registration: Application to Upper Abdominal MRI Super-Resolution.

Ehrhardt, M.J., Markiewicz, P., Liljeroth, M., Barnes, A., Kolehmainen, V., Duncan, J.S., ...Ourselin, S. (2016). PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets. IEEE Transactions on Medical Imaging, 1. doi:10.1109/TMI.2016.2549601

Ehrhardt, M.J., Markiewicz, P., Liljeroth, M., Barnes, A., Kolehmainen, V., Duncan, J.S., ...Ourselin, S. (2016). PET Reconstruction with an Anatomical MRI Prior using Parallel Level Sets. IEEE Transactions on Medical Imaging, 1. doi:10.1109/TMI.2016.2549601

Ehrhardt, M.J., Markiewicz, P., Liljeroth, M., Barnes, A., Kolehmainen, V., Duncan, J.S., ...Ourselin, S. (2016). PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets.. IEEE Trans. Medical Imaging, 35 2189-2199.

Eiben, B., Lacher, R., Vavourakis, V., Hipwell, J.H., Stoyanov, D., Williams, N., ...Meetz, K. (2016). Breast conserving surgery outcome prediction: a patient-specific, integrated multi-modal imaging and mechano-biological modelling framework. In Tingberg, A., Lång, K. (Eds.), Breast Imaging. (pp. 274-281). Springer.

Eiben, B., Vavourakis, V., Hipwell, J.H., Kabus, S., Buelow, T., Lorenz, C., ...Keshtgar, M. (2016). Symmetric Biomechanically Guided Prone-to-Supine Breast Image Registration. ANNALS OF BIOMEDICAL ENGINEERING, 44 (1), 154-173. doi:10.1007/s10439-015-1496-z

Eiben, B., Vavourakis, V., Hipwell, J.H., Kabus, S., Lorenz, C., Buelow, T., ...Hawkes, D.J. (2016). Surface Driven Biomechanical Breast Image Registration.

Erlandsson, K., Liljeroth, M., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2016). Improved Parameter-Estimation With MRI-Constrained PET Kinetic Modeling: A Simulation Study. IEEE TRANSACTIONS ON NUCLEAR SCIENCE, 63 (5), 2464-2470. doi:10.1109/TNS.2015.2507444

Eshaghi, A., Ciccarelli, O., Wottschel, V., Cortese, R., Calabrese, M., Sahraian, M.A., ...Alexander, D. (2016). Gray matter MRI differentiates neuromyelitis optica from multiple sclerosis using random-forest. Neurology, 87 (23), 2463-2470. doi:10.1212/WNL.000000000000339

Eshaghi, A., Prados, F., Brownlee, W., Tur, C., van de Pavert, S.H.P., Cawley, N., ...Stromillo, M.L. (2016). Imaging signature of multiple sclerosis phenotypes in grey matter..

Evans, V., Torrealdea, F., Rega, M., Punwani, S., Golay, X., Atkinson, D. (2016). Improved fitting of CEST z-spectra using Bloch-McConnell simulations for the water peak.

Farina, A., Betcke, M., Ducros, N., Di Sieno, L., Bassi, A., Pifferi, A., ...D'Andrea, C. (2016). Time-resolved Diffuse Optical Tomography based on Single pixel camera.

Firman, M., Aodha, O.M., Julier, S., Brostow, G.J. (2016). Structured prediction of unobserved voxels from a single depth image.

Frankel, P., Nicola Lockwood, Marie-Christine Ramel, Teresa Correia , Matthew Ellis , Rachel Patel , Sebastian Brandner, Simon Arridge , Matilda Katan, ,. (2016). Quantitative in vivo optical tomography of cancer progression & vasculature development in adult zebrafish.. Oncotarget,

Gabel, M., Tsermentseli, S., Goldstein, L.H., Al-Chalabi, A., Young, A., Alexander, D., ...Cercignani, M. (2016). COGNITIVE IMPAIRMENT OCCURS BEFORE LOSS OF FUNCTION IN ALS.

Ganepola, T., Zhang, J., Zhang, H., Sereno, M., Alexander, D. (2016). Evaluation of diffusion MRI based feature sets for the classification of primary motor and somatosensory cortical areas.

Ghosh, A., Alexander, D., Zhang, H. (2016). Crossing Versus Fanning: Model Comparison Using HCP Data. In Fuster, A., Ghosh, A., Kaden, E., Rathi, Y., Reisert, M. (Eds.), Computational Diffusion MRI - CDMRI 2016. (pp. 159-169). Springer.

Griffin, L. (2016). What Shape Is France?.

Grussu, F., Schneider, T., Prados, F., Tur, C., Ourselin, S., Zhang, H., ...Wheeler-Kingshott, C. (2016). Axon diameter distribution influences diffusion-derived axonal density estimation in the human spinal cord: in silico and in vivo evidence.

Grussu, F., Schneider, T., Yates, R.L., Zhang, H., Wheeler-Kingshott, C.A., DeLuca, G.C., Alexander, D.C. (2016). A framework for optimal whole-sample histological quantification of neurite orientation dispersion in the human spinal cord.. Journal of neuroscience methods, 273 20-32. doi:10.1016/j.jneumeth.2016.08.002

Haines, T.S.F., Mac Aodha, O., Brostow, G.J. (2016). My Text in Your Handwriting. ACM TRANSACTIONS ON GRAPHICS, 35 (3), doi:10.1145/2886099

Hawkes, D.J. (2016). From clinical imaging and computational models to personalised medicine and image guided interventions.. Medical image analysis, doi:10.1016/j.media.2016.06.022

Hayashi, Y., Misawa, K., Hawkes, D.J., Mori, K. (2016). Progressive internal landmark registration for surgical navigation in laparoscopic gastrectomy for gastric cancer. International Journal of Computer Assisted Radiology and Surgery, 11 (5), 837-845. doi:10.1007/s11548-015-1346-3

Hedman, P., Ritschel, T., Drettakis, G., Brostow, G. (2016). Scalable Inside-Out Image-Based Rendering. ACM Transactions on Graphics, 35 (6), doi:10.1145/2980179.2982420

Hill, E.R., Xia, W., Nikitichev, D., Gurusamy, K., Beard, P., Hawkes, D.J., ...Desjardins, A. (2016). Interventional multi-spectral photoacoustic imaging in laparoscopic surgery.

Hipwell, J.H., Vavourakis, V., Han, L., Mertzanidou, T., Eiben, B., Hawkes, D.J. (2016). A review of biomechanically informed breast image registration. PHYSICS IN MEDICINE AND BIOLOGY, 61 (2), R1-R31. doi:10.1088/0031-9155/61/2/R1

Hochuli, R., Powell, S., Arridge, S., Cox, B. (2016). Quantitative photoacoustic tomography using forward and adjoint Monte Carlo models of radiance. Journal of Biomedical Optics, 21 (12), doi:10.1117/1.JBO.21.12.126004

Huen, I., Beckmann, J., Suzuki, Y., Zuluaga, M., Melbourne, A., van Osch, M.J., ...Golay, X. (2016). Measurement of bolus arrival time and velocity in Circle of Willis using dynamic MR angiography.

Hu, Y., Bonmati, E., Gibson, E., Hipwell, J.H., Hawkes, D.J., Bandula, S., ...Barratt, D.C. (2016). 2D-3D registration accuracy estimation for optimised planning of image-guided pancreatobiliary interventions.

Hu, Y., Kasivisvanathan, V., Simmons, L., Clarkson, M., Thompson, S., Shah, T., ...Emberton, M. (2016). Development and Phantom Validation of a 3D-Ultrasound-Guided System for Targeting MRI-visible Lesions during Transrectal Prostate Biopsy. IEEE Transactions on Biomedical Engineering,

Huynh, N., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2016). Single-pixel optical camera for video rate ultrasonic imaging. Optica, 3 (1), 26-29. doi:10.1364/OPTICA.3.000026

Ianus, A., Alexander, D.C., Drobnjak, I. (2016). Microstructure Imaging Sequence Simulation Toolbox.

Ianus, A., Drobnjak, I., Alexander, D.C. (2016). Model-based estimation of microscopic anisotropy usingdiffusion MRI: a simulation study. NMR in Biomedicine, doi:10.1002/nbm.3496

Ianuş, A., Shemesh, N., Alexander, D.C., Drobnjak, I. (2016). Double oscillating diffusion encoding and sensitivity to microscopic anisotropy. Magnetic Resonance in Medicine, doi:10.1002/mrm.26393

Inati, S., Naegele, J., Zwart, N., Roopchansingh, V., Lizak, M.J., Hansen, D.C., ...Kozerke, S. (2016). ISMRM Raw data format: A proposed standard for MRI raw datasets. Magnetic Resonance in Medicine, 77 (1), 411-421. doi:10.1002/mrm.26089

Jaccard, N., Rogers, T.W., Morton, E.J., Griffin, L.D. (2016). Tackling the X-ray cargo inspection challenge using machine learning.

Jacobs, J.G., Johnston, E., Freeman, A., Patel, D., Rodriguez-Justo, M., Atkinson, D., ...Panagiotaki, E. (2016). Histological validation of VERDICT cellularity map in a prostatectomy case.

Jacobs, J.G., Panagiotaki, E., Freeman, A., Brostow, G., Alexander, D.C. (2016). Automatic Nuclei Detection in Low Magnification Prostate Histology.

Jiao, J., Bousse, A., Thielemans, K., Burgos, N., Weston, P., Markiewicz, P., ...Hutton, B. (2016). Direct Parametric Reconstruction with Joint Motion Estimation/Correction for Dynamic Brain PET Data.. IEEE Trans Med Imaging, doi:10.1109/TMI.2016.2594150

Johnston, E., Cheung, K., Dikaios, N., Sidhu, H.S., Appayya, M., Simmons, L., ...Punwani, S. (2016). Logistic regression models may predict Gleason grade of prostate cancer in the peripheral zone but not the transition zone.

Johnston, E., Panagiotaki, E., Bonet-Carne, E., Stevens, N., Atkinson, D., Alexander, D., Punwani, S. (2016). Short term repeatability of microstructural (VERDICT) MRI vs. ADC in prostate cancer.

Johnston, E., Pye, H., Bonet-Carne, E., Panagiotaki, E., Patel, D., Galazi, M., ...Trevisan, G. (2016). INNOVATE: A prospective cohort study combining serum and urinary biomarkers with novel diffusion-weighted magnetic resonance imaging for the prediction and characterization of prostate cancer. BMC Cancer, doi:10.1186/s12885-016-2856-2

Johnston, E.W., Pye, H., Bonet-Carne, E., Panagiotaki, E., Patel, D., G.a.l.a.z.i., ...Trevisan, G. (2016). INNOVATE: A prospective cohort study combining serum and urinary biomarkers with novel diffusion-weighted magnetic resonance imaging for the prediction and characterization of prostate cancer.. BMC Cancer, doi:10.1186/s12885-016-2856-2

Jones, G., Clancy, N., Arridge, S., Elson, D., stoyanov, D. (2016). Inference of Tissue Haemoglobin ConcentrationFrom Stereo RGB.

Jones, G., Clancy, N.T., Arridge, S.R., Elson, D.S., Stoyanov, D. (2016). Inference of Tissue Haemoglobin Concentration from Stereo RGB..

Kaden, E., Kelm, N.D., Carson, R.P., Does, M.D., Alexander, D.C. (2016). Multi-compartment microscopic diffusion imaging.. NeuroImage, doi:10.1016/j.neuroimage.2016.06.002

Kalasthry, J., Taylor, S.A., Atkinson, D., Bainbridge, A., Punwani, S., Barnes, A., S.T.R.E.A.M.L.I.N.E. (2016). Reproducibility of whole body ADC in a non-optimized multi-centre trial: Effectiveness of normalisation method.

Lam, C., Chaddock, G., Marciani, L., Costigan, C., Paul, J., Cox, E., ...Garsed, K. (2016). Colonic response to laxative ingestion as assessed by MRI differs in constipated irritable bowel syndrome compared to functional constipation. Neurogastroenterology and Motility, 28 (6), 861-870. doi:10.1111/nmo.12784

Li, W., Viola, F., Starck, J., Brostow, G.J., Campbell, N.D.F. (2016). Roto++: Accelerating professional rotoscoping using shape manifolds. ACM Transactions on Graphics, 35 (4), doi:10.1145/2897824.2925973

Lockwood, N.J., Ramel, M.C., Ellis, M., Brandner, S., Arridge, S., Katan, M., Frankel, P. (2016). Quantitative in vivo optical tomography of cancer progression and vasculature development in adult zebrafish.

Malone, E., Cox, B., Arridge, S. (2016). Multispectral reconstruction methods for quantitative photoacoustic tomography.

Manber, R., Thielemans, K., Hutton, B.F., Wan, S., McClelland, J., Barnes, A., ...Atkinson, D. (2016). Joint PET-MR respiratory motion models for clinical PET motion correction.. Physics in medicine and biology, 61 (17), 6515-6530. doi:10.1088/0031-9155/61/17/6515

Markiewicz, P.J., Ehrhardt, M.J., Atkinson, D., Arridge, S.R., Hutton, B.F., Ourselin, S. (2016). Uniform acquisition modelling across PET imaging systems: unified scatter modelling.

Markiewicz, P.J., Thielemans, K., Schott, J.M., Atkinson, D., Arridge, S., Hutton, B., Ourselin, S. (2016). Rapid processing of PET list-mode data for efficient uncertainty estimation and data analysis. Physics in Medicine and Biology, 61 (13), doi:10.1088/0031-9155/61/13/N322

Markiewicz, P., Schott, J., Atkinson, D., Arridge, S., Hutton, B., Ourselin, S. (2016). Infrastructure for efficient multi-component uncertainty estimation of SUVR values in amyloid PET imaging.

Mazomenos, E.B., Chang, P.-.L., Rippel, R.A., Rolls, A., Hawkes, D.J., Bicknell, C.D., ...Stoyanov, D. (2016). Catheter manipulation analysis for objective performance and technical skills assessment in transcatheter aortic valve implantation. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 11 (6), 1121-1131. doi:10.1007/s11548-016-1391-6

Mazomenos, E.B., Chang, P.-.L., Rolls, A., Hawkes, D.J., Bicknell, C.D., Poorten, E.V., ...Stoyanov, D. (2016). A Survey on the Current Status and Future Challenges Towards Objective Skills Assessment in Endovascular Surgery. Journal of Medical Robotics Research, 1640010. doi:10.1142/S2424905X16400109

Melbourne, A., Eaton-Rosen, Z., Orasanu, E., Beckmann, J., Saborowska, A., Atkinson, D., ...Ourselin, S. (2016). Perfusion and diffusion in the extremely preterm young adult thalamus.

Melbourne, A., Orasanu, E., Eaton-Rosen, Z., Beckmann, J., Saborowska, A., Atkinson, D., ...Ourselin, S. (2016). Characterizing microstructure and shape of the extremely preterm 19 year-old corpus callosum.

Melbourne, A., Orasanu, E., Eaton-Rosen, Z., Cardoso, M.J., Beckmann, J., Smith, L., ...Ourselin, S. (2016). Analysis of brain volume in a 19 year-old extremely-preterm born cohort.

Melbourne, A., Pratt, R., Owen, D., Sokloska, M., Bainbridge, A., Atkinson, D., ...David, A. (2016). Placental Image Analysis using Coupled Diffusion-Weighted and Multi-Echo T2 MRI and a Multi-Compartment Model.

Melbourne, A., Toussaint, N., Owen, D., Simpson, I., Anthopoulos, T., De Vita, E., ...Ourselin, S. (2016). NiftyFit: a Software Package for Multi-parametric Model-Fitting of 4D Magnetic Resonance Imaging Data.. Neuroinformatics, 1-19. doi:10.1007/s12021-016-9297-6

Menys, A., Butt, S., Emmanuel, A., Plumb, A.A., Fikree, A., Knowles, C., ...Taylor, S.A. (2016). Comparative quantitative assessment of global small bowel motility using magnetic resonance imaging in chronic intestinal pseudo-obstruction and healthy controls. NEUROGASTROENTEROLOGY AND MOTILITY, 28 (3), 376-383. doi:10.1111/nmo.12735

Mertzanidou, T., Hipwell, J.H., Reis, S., Bejnordi, B.E., Hermsen, M., Dalmis, M., ...Karssemeijer, N. (2016). Whole Mastectomy Volume Reconstruction from 2D Radiographs and Its Mapping to Histology.

Mozumder, M., Tarvainen, T., Arridge, S., Kaipio, J.P., d'Andrea, C., Kolehmainen, V. (2016). Approximate Marginalization of Absorption and Scattering in Fluorescence Diffuse Optical Tomography. INVERSE PROBLEMS AND IMAGING, 10 (1), 227-246. doi:10.3934/ipi.2016.10.227

O Connor, J.P.B., Aboagye, E.O., Adams, J.E., Aerts, H.J.W.L., Barrington, S.F., Beer, A.J., ...Brown, G. (2016). Imaging biomarker roadmap for cancer studies. Nature reviews Clinical oncology, doi:10.1038/nrclinonc.2016.162

Orasanu, E., Melbourne, A., Eaton-Rosen, Z., Atkinson, D., Lawan, J., Beckmann, J., ...Ourselin, S. (2016). Local shape analysis of the thalamus in extremely preterm born young adults.

Orasanu, E., Melbourne, A., Eaton-Rosen, Z., Atkinson, D., Saborowska, A., Beckmann, J., ...Ourselin, S. (2016). Cortical folding patterns in extremely preterm born young adults.

Pendse, D.A., Makanyanga, J., Plumb, A.A.O., Bhatnagar, G., Atkinson, D., Rodriguez-Justo, M., ...Taylor, S.A. (2016). Diffusion-weighted Imaging for evaluating inflammatory activity in Crohn's disease: comparison with histopathology, conventional MRI activity scores, and faecal calprotectin.. Abdominal Imaging, 42 (1), 115-123. doi:10.1007/s00261-016-0863-z

Powell, S., Dempsey, L.A., Cooper, R.J., Gibson, A.P., Hebden, J.C., Arridge, S.R. (2016). Real-time dynamic image reconstruction in time-domain diffuse optical tomography.

Protonotarios, E.D., Johnston, A., Griffin, L.D. (2016). Difference magnitude is not measured by discrimination steps for order of point patterns. JOURNAL OF VISION, 16 (9), doi:10.1167/16.9.2

Protonotarios, E., Griffin, L. (2016). Discrimination of the Order of Point Patterns Depends on Presentation Parameters.

Pulkkinen, A., Cox, B.T., Arridge, S.R., Goh, H., Kaipio, J.P., Tarvainen, T. (2016). Direct Estimation of Optical Parameters from Photoacoustic Time Series in Quantitative Photoacoustic Tomography. IEEE Transactions on Medical Imaging, 35 (11), 2497-2508. doi:10.1109/TMI.2016.2581211

Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2016). Bayesian parameter estimation in spectral quantitative photoacoustic tomography.

Reis, S., Gazinska, P., Hipwell, J.H., Mertzanidou, T., Naidoo, K., Pinder, S., Hawkes, D.J. (2016). Classification of Breast Cancer Stroma as a Tool for Prognosis.

Rogers, T.W., Jaccard, N., Morton, E.J., Griffin, L.D. (2016). Automated X-ray image analysis for cargo security: Critical review and future promise.. J Xray Sci Technol, doi:10.3233/XST-160606

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Schneider, C., Johnson, S.P., Walker-Samuel, S., Gurusamy, K., Clarkson, M.J., Thompson, S., ...Desjardins, A.E. (2016). Utilizing confocal laser endomicroscopy for evaluating the adequacy of laparoscopic liver ablation. LASERS IN SURGERY AND MEDICINE, 48 (3), 299-310. doi:10.1002/lsm.22464

Schweiger, M., Arridge, S. (2016). Basis mapping methods for forward and inverse problems. International Journal for Numerical Methods in Engineering, doi:10.1002/nme.5271

Sepehrband, F., Alexander, D.C., Clark, K.A., Kurniawan, N.D., Yang, Z., Reutens, D.C. (2016). Parametric Probability Distribution Functions for Axon Diameters of Corpus Callosum. FRONTIERS IN NEUROANATOMY, 10 doi:10.3389/fnana.2016.00059

Sepehrband, F., Alexander, D.C., Kurniawan, N.D., Reutens, D.C., Yang, Z. (2016). Towards higher sensitivity and stability of axon diameter estimation with diffusion-weighted MRI. NMR IN BIOMEDICINE, 29 (3), 293-308. doi:10.1002/nbm.3462

Shemesh, N., Jespersen, S.N., Alexander, D.C., Cohen, Y., Drobnjak, I., Dyrby, T.B., ...Laun, F. (2016). Conventions and Nomenclature for Double Diffusion Encoding NMR and MRI. MAGNETIC RESONANCE IN MEDICINE, 75 (1), 82-87. doi:10.1002/mrm.25901

Sidhu, H.S.S., Barnes, A., Dikaios, N., Rice, S., Bainbridge, A., Stein, R., ...Punwani, S. (2016). In vivo measurement of tumor T1 relaxation time using a whole body clinically feasible multiple flip angle method can predict responseto chemotherapy.

Super, A., Jaccard, N., Marques, M.P.C., Macown, R.J., Griffin, L.D., Veraitch, F.S., Szita, N. (2016). Real-time monitoring of specific oxygen uptake rates of embryonic stem cells in a microfluidic cell culture device. BIOTECHNOLOGY JOURNAL, 11 (9), 1179-1189. doi:10.1002/biot.201500479

Tanay, T., Griffin, L.D. (2016). A Boundary Tilting Persepective on the Phenomenon of Adversarial Examples. [Digital scholarly resource]. Retrieved from: https://arxiv.org/abs/1608.07690

Tanno, R., Ghosh, A., Grussu, F., Kaden, E., Criminisi, A., Alexander, D.C. (2016). Bayesian image quality transfer.

Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A., Zhang, H. (2016). Bingham-NODDI: Mapping anisotropic orientation dispersion of neurites using diffusion MRI. Neuroimage, doi:10.1016/j.neuroimage.2016.01.046

Tarvainen, T., Pulkkinen, A., Cox, B.T., Kaipio, J.P., Arridge, S.R. (2016). Image reconstruction with noise and error modelling in quantitative photoacoustic tomography.

Thielemans, K., Arridge, S. (2016). Adaptive adjustment of the number of subsets during iterative image reconstruction.

Thomas, D.L., Nery, F., Gordon, I., Clark, C.A., Ourselin, S., Golay, X., ...De Vita, E. (2016). Reduction of motion artefacts in multi-shot 3D GRASE Arterial Spin Labelling using autofocus.

Thompson, S.A., Schneider, C., Gurusamy, K., Hawkes, D., Davidson, B., Clarkson, M. (2016). Development, Validation, and Modelling of Image Guidance Systems for Surgery.

Thompson, S., Stoyanov, D., Schneider, C., Gurusamy, K., Ourselin, S., Davidson, B., ...Clarkson, M.J. (2016). Hand-eye calibration for rigid laparoscopes using an invariant point. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 11 (6), 1071-1080. doi:10.1007/s11548-016-1364-9

Tsai, Y.J., Bousse, A., Ehrhardt, M.J., Hutton, B.F., Arridge, S., Thielemans, K. (2016). Performance evaluation of MAP algorithms with different penalties, object geometries and noise levels.

Vandenberghe, R., Rinne, J.O., Boada, M., Katayama, S., Scheltens, P., Vellas, B., ...Hill, D. (2016). Bapineuzumab for mild to moderate Alzheimer's disease in two global, randomized, phase 3 trials. ALZHEIMERS RESEARCH & THERAPY, 8 doi:10.1186/s13195-016-0189-7

Vavourakis, V., Eiben, B., Hipwell, J.H., Williams, N.R., Keshtgar, M., Hawkes, D.J. (2016). BREAST-CONSERVING SURGERY: A VALIDATED 3D, MULTISCALE, MECHANO -BIOLOGICAL, MODELLING FRAMEWORK FOR SURGICAL PLANNING AND COSMETIC OUTCOME PREDICTION OF BREAST CANCER TREATMENT.

Vavourakis, V., Eiben, B., Hipwell, J.H., Williams, N.R., Keshtgar, M., Hawkes, D.J. (2016). Multiscale mechano-biological finite element modelling of oncoplastic breast surgery - Numerical study towards surgical planning and cosmetic outcome prediction. PLoS ONE, 11 (7), doi:10.1371/journal.pone.0159766

Vavourakis, V., Hipwell, J.H., Hawkes, D.J. (2016). An Inverse Finite Element u/p-Formulation to Predict the Unloaded State of In Vivo Biological Soft Tissues. ANNALS OF BIOMEDICAL ENGINEERING, 44 (1), 187-201. doi:10.1007/s10439-015-1405-5

Vavourakis, V., Wijeratne, P., Shipley, R., Stylianopoulos, T., Hawkes, D.J. (2016). The Mechanical Underpinning of Tumour-induced Angiogenesis and Growth.

Veiga, C., Landau, D., Devaraj, D., Hawkes, D., McClelland, J. (2016). Challenges in the registration of serial CT images from lung radiotherapy patients.

Vendhan, K., Bray, T.J., Atkinson, D., Punwani, S., Fisher, C., Sen, D., ...Hall-Craggs, M.A. (2016). A diffusion-based quantification technique for assessment of sacroiliitis in adolescents with enthesitis-related arthritis.. The British Journal of Radiology, 20150775. doi:10.1259/bjr.20150775

von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2016). Free-breathing diffusion tensor imaging of the in vivo human heart - stimulated echo vs. spin echo acquisition.

Wijeratne, P.A., Vavourakis, V., Hipwell, J.H., Voutouri, C., Papageorgis, P., Stylianopoulos, T., ...Hawkes, D.J. (2016). Multiscale modelling of solid tumour growth: the effect of collagen micromechanics. BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 15 (5), 1079-1090. doi:10.1007/s10237-015-0745-2

Wijeratne, P., Vavourakis, V., Hipwell, J.H., Shipley, R., Stylianopoulos, T., Evans, A., ...Hawkes, D.J. (2016). MULTISCALE BIPHASIC MODELLING OF TUMOUR GROWTH: THE EFFECT OF COLLAGEN MICROMECHANICS ON DRUG DELIVERY.

Wolz, R., Schwarz, A.J., Gray, K.R., Yu, P., Hill, D.L.G. (2016). Enrichment of clinical trials in MCI due to AD using markers of amyloid and neurodegeneration. Neurology, 87 (12), 1235-1241. doi:10.1212/WNL.0000000000003126

Worrall, D.E., Wilson, C., Brostow, G.J. (2016). Automated Retinopathy of Prematurity Case Detection with Convolutional Neural Networks.

Wottschel, V., Alexander, D.C., Chard, D.T., Enzinger, C., Filippi, M., Frederiksen, J.L., ...Rovira, A. (2016). Individual prediction of clinically definite MS in patients presenting with clinically isolated syndrome using machine learning.

Zhang, J., Ghosh, A.U.R.O.B.R.A.T.A., Alexander, D.A.N.I.E.L., Zhang, H.U.I. (2016). The lifespan trajectory of white matter microstructure detected by NODDI.

Zhang, J., Slattery, C., Paterson, R., Foulkes, A., Mancini, L., Thomas, D.L., ...Thornton, J. (2016). Neurite Orientation Dispersion and Density Imaging (NODDI) in Young Onset Alzheimer's Disease and Its Syndromic Variants.

Zhao, Q., Griffin, L. (2016). Better Image Segmentation by Exploiting Dense Semantic Predictions. [Digital scholarly resource]. Retrieved from: https://arxiv.org/abs/1606.01481

2015

Alexander, D.C., Zikic, D., Wottschel, V., Zhang, J., Zhang, H., Criminisi, A. (2015). Image Quality Transfer: Exploiting Bespoke High-Quality Data to Enhance Everyday Acquisitions.

Allan, M., Chang, P.-.L., Ourselin, S., Hawkes, D.J., Sridhar, A., Kelly, J., Stoyanov, D. (2015). Image Based Surgical Instrument Pose Estimation with Multi-class Labelling and Optical Flow.

Arridge, S., Cooper, R.J. (2015). Optical Image Reconstruction. In Brain Mapping: An Encyclopedic Reference. (pp. 217-222). .

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Auria, A., Romascano, D., Canales-Rodriguez, E., Wiau, Y., Dirby, T.B., Alexander, D., ...Daducci, A. (2015). ACCELERATED MICROSTRUCTURE IMAGING VIA CONVEX OPTIMISATION FOR REGIONS WITH MULTIPLE FIBRES (AMICO(X)).

Bailey, C., Panagiotaki, E., Tunariu, N., Orton, M.R., Morgan, V.A., Feiweier, T., ...Alexander, D.C. (2015). Modelling tissue microstructure in bone metastases from prostate cancer using VERDICT MRI.

Batalle, D., Hughes, E., Zhang, H., Tournier, J.-.D., Tusor, N., Aljabar, P., ...Counsell, S.J. (2015). Analysis of In Vivo Microstructural Features During the First Weeks of Life Using Structural Brain Networks.

Bohner, G., Gustafsson, N., Cade, N.I., Maurer, S.P., Griffin, L.D., Surrey, T. (2015). Important factors determining the nanoscale tracking precision of dynamic microtubule ends. JOURNAL OF MICROSCOPY, 261 (1), 67-78. doi:10.1111/jmi.12316

Bouremoum, S., Protonotarios, E., Griffin, L. (2015). Quantifying Texture Scale.

Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B., Thielemans, K. (2015). Direct Joint Motion Estimation/Image Reconstruction in Attenuation-Corrected Gated PET/CT Using a Single CT.

Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B., Thielemans, K. (2015). Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT using a Single Attenuation Map.. IEEE Transactions on Medical Imaging, doi:10.1109/tmi.2015.2464156

Bousse, A., Jiao, J., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2015). Joint direct motion estimation/kinetic images reconstruction from gated PET DATA.

Bousse, A., Jiao, J., Thielmans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2015). Joint Direct Motion Estimation/Kinetic Images Reconstruction from Gated PET Data. In Gao, F., Shi, K., Li, S. (Eds.), Computational Methods for Molecular Imaging. (pp. 53-62). Springer.

Bray, T.J.P., Vendhan, K., Atkinson, D., Punwani, S., Ioannou, Y., Sen, D., ...Hall-Craggs, M.A. (2015). Biological validation of quantitative ADC as a biomarker for sacroiliitis in adolescents with enthesitis-related arthritis.

Brigadoi, S., Powell, S., Cooper, R.J., Dempsey, L.A., Arridge, S., Everdell, N., ...Gibson, A.P. (2015). Evaluating real-time image reconstruction in diffuse optical tomography using physiologically realistic test data. BIOMEDICAL OPTICS EXPRESS, 6 (12), 4719-4736. doi:10.1364/BOE.6.004719

Brostow, G. (2015). Human in the loop computer vision. PERCEPTION, 44 360.

Burgos, N., Cardoso, M.J., Modat, M., Punwani, S., Atkinson, D., Arridge, S., ...Ourselin, S. (2015). CT synthesis in the head & neck region for PET/MR attenuation correction: an iterative multi-atlas approach.

Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Dickson, J., Schott, J., ...Ourselin, S. (2015). Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers. European Journal of Nuclear Medicine and Molecular Imaging, 42 (9), 1447-1458. doi:10.1007/s00259-015-3082-x

Burgos, N.F., Cardoso, M.J., Guerreiro, F., Veiga, C., Modat, M., McClelland, J., ...Arridge, S.R. (2015). Robust CT Synthesis for Radiotherapy Planning: Application to the Head & Neck Region.

Burgos, N.F., Cardoso, M.J., Mendelson, A.F., Schott, J.M., Atkinson, D., Arridge, S.R., ...Ourselin, S. (2015). Subject-specific Models for the Analysis of Pathological FDG PET Data.

Campbell-Washburn, A.E., Atkinson, D., Nagy, Z., Chan, R.W., Josephs, O., Lythgoe, M.F., ...Thomas, D.L. (2015). Using the Robust Principal Component Analysis algorithm to remove RF spike artifacts from MR images. Magnetic Resonance in Medicine, doi:10.1002/mrm.25851

Clayden, J.D., Nagy, Z., Weiskopf, N., Alexander, D.C., Clark, C.A. (2015). Microstructural parameter estimation in vivo using diffusion MRI and structured prior information. Magnetic Resonance in Medicine, 75 (4), 1787-1796. doi:10.1002/mrm.25723

Contini, D., Dalla Mora, A., Arridge, S., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Time-domain diffuse optics: towards next generation devices.

Correia, T., Lockwood, N., Kumar, S., Yin, J., Ramel, M.-.C., Andrews, N., ...McGinty, J. (2015). Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish. PLOS ONE, 10 (8), doi:10.1371/journal.pone.0136213

Cruz, G., Atkinson, D., Buerger, C., Schaeffter, T., Prieto, C. (2015). Accelerated motion corrected three-dimensional abdominal MRI using total variation regularized SENSE reconstruction. Magnetic Resonance in Medicine, 75 (4), 1484-1498. doi:10.1002/mrm.25708

Cruz, G., Atkinson, D., Schaeffter, T., Prieto, C. (2015). Navigation-based motion model for motion compensated reconstruction in 3D abdominal MRI.

Dalla Mora, A., Contini, D., Arridge, S., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Towards next-generation time-domain diffuse optics for extreme depth penetration and sensitivity. BIOMEDICAL OPTICS EXPRESS, 6 (5), 1749-1760. doi:10.1364/BOE.6.001749

Dalla Mora, A., Contini, D., Arridge, S.R., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Towards next generation time-domain diffuse optics devices.

Dalla Mora, A., Martinenghi, E., Contini, D., Tosi, A., Boso, G., Durduran, T., ...Torricelli, A. (2015). Fast silicon photomultiplier improves signal harvesting and reduces complexity in time-domain diffuse optics. OPTICS EXPRESS, 23 (11), 13937-13946. doi:10.1364/OE.23.013937

Dempsey, L.A., Cooper, R.J., Powell, S., Edwards, A., Lee, C.-.W., Brigadoi, S., ...Austin, T. (2015). Whole-head functional brain imaging of neonates at cot-side using time-resolved diffuse optical tomography.

Dikaios, N., Alkalbani, J., Abd-Alazeez, M., Sidhu, H., Kirkham, A., Ahmed, H., ...Taylor, S. (2015). Zone-specific logistic regression models improve classification of prostate cancer on multi-parametric MRI. European Radiology, doi:10.1007/s00330-015-3636-0

Dikaios, N., Alkalbani, J., Kirkham, A., Allen, C., Ahmed, H., Emberton, M., ...Atkinson, D. (2015). Support Vector Neural Networks versus Logistic Regression MR based diagnostic model for classification of transition zone prostate cancer.

Dikaios, N., Punwani, S., Atkinson, D. (2015). Direct parametric reconstruction from (k, t)-space data in dynamic contrast enhanced MRI.

Drobnjak, I., Zhang, H., Ianus, A., Kaden, E., Alexander, D.C. (2015). Why Should Axon Diameter Mapping Use Low Frequency OGSE? Insight from Simulation.

Ehrhardt, M., Thielemans, K., Pizarro, L., Atkinson, D., Ourselin, S., Hutton, B., Arridge, S. (2015). Joint reconstruction of PET-MRI by exploiting structural similarity. Inverse Problems, 31 doi:10.1088/0266-5611/31/1/015001

Erlandsson, K., Dickson, J., Arridge, S., Atkinson, D., Ourselin, S., Hutton, B. (2015). MR Imaging–Guided partial volume correction of PET data in PET/MR imaging. PET Clinics, 11 161-177. doi:10.1016/j.cpet.2015.09.002

Erlandsson, K., Liljeroth, M., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2015). Improved parameter-estimation with combined PET-MRI kinetic modelling.

Farina, A., Lepore, M., Di Sieno, L., Dalla Mora, A., Ducros, N., Pifferi, A., ...D'Andrea, C. (2015). Diffuse optical tomography by using time-resolved single pixel camera.

Ferizi, U., Schneider, T., Witzel, T., Wald, L.L., Zhang, H., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2015). White matter compartment models for in vivo diffusion MRI at 300 mT/m. NEUROIMAGE, 118 468-483. doi:10.1016/j.neuroimage.2015.06.027

Figini, M., Alexander, D.C., Redaelli, V., Fasano, F., Grisoli, M., Baselli, G., ...Bizzi, A. (2015). Mathematical models for the diffusion magnetic resonance signal abnormality in patients with prion diseases. NEUROIMAGE-CLINICAL, 7 142-154. doi:10.1016/j.nicl.2014.11.017

Ganepola, T., Nagy, Z., Alexander, D., Sereno, M. (2015). An unsupervised group average cortical parcellation using HARDI data.

Godard, C., Hedman, P., Li, W., Brostow, G.J. (2015). Multi-view Reconstruction of Highly Specular Surfaces in Uncontrolled Environments.

Griffin, L.D., Sutcliffe, A.G., Bradbury, K., Kumble, S., Mylonas, D., Baker, A. (2015). Colour and spectral reflectance of stools from normal neonatal babies. COLOR RESEARCH AND APPLICATION, 40 (6), 585-591. doi:10.1002/col.21919

Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Newcombe, J., Zhang, H., ...Wheeler-Kingshott, C.A.M. (2015). Histological metrics confirm microstructural characteristics of NODDI indices in multiple sclerosis spinal cord.

Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Tur, C., Newcombe, J., ...Wheeler-Kingshott, C.A.M. (2015). Quantitative histological validation of NODDI MRI indices of neurite morphology in multiple sclerosis spinal cord.

Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Zhang, H., Alexander, D.C., ...Wheeler-Kingshott, C.A.M. (2015). Quantitative histological correlates of NODDI orientation dispersion estimates in the human spinal cord.

Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2015). Neurite orientation dispersion and density imaging of the cervical cord in vivo.

Grussu, F., Schneider, T., Zhang, H., Alexander, D., Wheeler-Kingshott, C. (2015). Neurite orientation dispersion and density imaging of the healthy cervical spinal cord in vivo. Neuroimage, 111 590-601. doi:10.1016/j.neuroimage.2015.01.045

Gryka, M., Terry, M., Brostow, G.J. (2015). Learning to Remove Soft Shadows. ACM Transactions on Graphics,

Hayashi, Y., Misawa, K., Oda, M., Hawkes, D.J., Mori, K. (2015). Clinical application of a surgical navigation system based on virtual laparoscopy in laparoscopic gastrectomy for gastric cancer. International Journal of Computer Assisted Radiology and Surgery, 11 (5), 827-836. doi:10.1007/s11548-015-1293-z

Hoad, C., Menys, A., Garsed, K., Marciani, L., Hamy, V., Murray, K., ...Spiller, R. (2015). Colon wall motility: comparison of novel quantitative semi-automatic measurements using cine-MRI. Neurogastroenterology and Motility, doi:10.1111/nmo.12727

H.o.c.h.u.l.i., Powell, S., Arridge, S., Cox, B. (2015). Forward and Adjoint Radiance Monte Carlo Models for Quantitative Photoacoustic Imaging.

Hochuli, R., Powell, S., Arridge, S., Cox, B. (2015). Forward and Adjoint Radiance Monte Carlo Models for Quantitative Photoacoustic Imaging. PHOTONS PLUS ULTRASOUND: IMAGING AND SENSING 2015, 9323 doi:10.1117/12.2081407

Huen, I., Beckmann, J., Suzuki, Y., Zuluaga, M.A., Melbourne, A., van Osch, M.J.P., ...Golay, X. (2015). Is adult brain vessel compliance affected by extreme prematurity?.

Huen, I., Beckmann, J., Suzuki, Y., Zuluaga, M.A., Melbourne, A., van Osch, M.J.P., ...Golay, X. (2015). DOES EXTREME PREMATURITY AFFECT ADULT BRAIN VESSEL COMPLIANCE? A PRELIMINARY MRI STUDY.

Huynh, N., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2015). A real-time ultrasonic field mapping system using a Fabry Perot single pixel camera for 3D photoacoustic imaging.

Ianus, A., Drobnjak, I., Alexander, D. (2015). Model-based estimation of microstructure parameters from diffusion MRI in the presence of microscopic anisotropy and size dispersion.

Ianus, A., Drobnjak, I., Alexander, D. (2015). Model-based estimation of microstructure parameters from diffusion MRI data in a substrate with microscopic anisotropy and a distribution of pore sizes.

Ianus, A., Drobnjak, I., Shemesh, N., Alexander, D. (2015). Metrics of microscopic anisotropy: a comparison study.

Jiao, J., Markiewicz, P., Burgos, N., Atkinson, D., Hutton, B., Arridge, S., Ourselin, S. (2015). Detail-preserving PET reconstruction with sparse image representation and anatomical priors. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 540-551. doi:10.1007/978-3-319-19992-4_42

Jiao, J., Markiewicz, P., Burgos, N., Atkinson, D., Hutton, B., Arridge, S., Ourselin, S. (2015). Detail-Preserving PET reconstruction with sparse image representation and anatomical priors.

Johns, E., Mac Aodha, O., Brostow, G.J. (2015). Becoming the Expert - Interactive Multi-Class Machine Teaching.

Johnsen, S.F. (2015). Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation.

Johnsen, S.F., Taylor, Z.A., Clarkson, M.J., Hipwell, J., Modat, M., Eiben, B., ...Hawkes, D.J. (2015). NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 10 (7), 1077-1095. doi:10.1007/s11548-014-1118-5

Johnsen, S.F., Taylor, Z.A., Han, L., Hu, Y., Clarkson, M.J., Hawkes, D.J., Ourselin, S. (2015). Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. International Journal of Computer Assisted Radiology and Surgery, 1-19. doi:10.1007/s11548-014-1142-5

Kaden, E., Kruggel, F., Alexander, D.C. (2015). Quantitative mapping of the per-axon diffusion coefficients in brain white matter. Magnetic Resonance in Medicine, 75 (4), 1752-1763. doi:10.1002/mrm.25734

Lacher, R.M., Hipwell, J.H., Williams, N.R., Keshtgar, M.R., Hawkes, D.J., Stoyanov, D. (2015). Low-cost surface reconstruction for aesthetic results assessment and prediction in breast cancer surgery.

Latifoltojar, A., Dikaios, N., Ridout, A., Moore, C., Illing, R., Kirkham, A., ...Allen, C. (2015). Evolution of multi-parametric MRI quantitative parameters following transrectal ultrasound-guided biopsy of the prostate. Prostate Cancer and Prostatic Diseases, 1-9. doi:10.1038/pcan.2015.33

Lehtikangas, O., Tarvainen, T., Kim, A.D., Arridge, S.R. (2015). Finite element approximation of the radiative transport equation in a medium with piece-wise constant refractive index. JOURNAL OF COMPUTATIONAL PHYSICS, 282 345-359. doi:10.1016/j.jcp.2014.11.025

Liljeroth, M., Erlandsson, K., Fraioli, F., Thomas, D., De Vita, E., Hutton, B., ...Atkinson, D. (2015). Dual-modality evaluation of tumour vasculature, morphology and metabolism via Dynamic Susceptibility Contrast MRI and FluoroEthyl Choline-PET using simultaneous PET/MR.

Liu, E., Schmidt, M.E., Margolin, R., Sperling, R., Koeppe, R., Mason, N.S., ...Fox, N.C. (2015). Amyloid-beta C-11-PiB-PET imaging results from 2 randomized bapineuzumab phase 3 AD trials. NEUROLOGY, 85 (8), 692-700. doi:10.1212/WNL.0000000000001877

Lorenzi, M., Ziegler, G., Alexander, D.C., Ourselin, S. (2015). Efficient gaussian process-based modelling and prediction of image time series. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 626-637. doi:10.1007/978-3-319-19992-4_49

Lorenzi, M., Ziegler, G., Alexander, D.C., Ourselin, S. (2015). Modelling Non-stationary and Non-separable Spatio-Temporal Changes in Neurodegeneration via Gaussian Process Convolution.

Malone, E., dos Santos, G.S., Holder, D., Arridge, S. (2015). A Reconstruction-Classification Method for Multifrequency Electrical Impedance Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING, 34 (7), 1486-1497. doi:10.1109/TMI.2015.2402661

Malone, E., Powell, S., Cox, B.T., Arridge, S. (2015). Reconstruction-classification method for quantitative photoacoustic tomography. JOURNAL OF BIOMEDICAL OPTICS, 20 (12), doi:10.1117/1.JBO.20.12.126004

Manber, R., Atkinson, D., Thielemans, K., Hutton, B., Barnes, A., O'Meara, C., ...Arridge, S. (2015). PRACTICAL PET RESPIRATORY MOTION CORRECTION IN CLINICAL SIMULTANEOUS PET/MR.

Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). Practical PET respiratory motion correction in clinical simultaneous PET/MR. Journal of Nuclear Medicine, 56 (6), 890-896. doi:10.2967/jnumed.114.151779

Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). Practical PET respiratory motion correction in clinicalPET/MR.

Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). MR Image-based PET Respiratory Motion Correction in PET/MR.

Markiewicz, P., Thielemans, K., Atkinson, D., Arridge, S., Hutton, B., Ourselin, S. (2015). Rapid workflow of mMR PET list-mode data processing using CUDA..

Markiewicz, P., Thielemans, K., Atkinson, D., Arridge, S., Hutton, B., Ourselin, S. (2015). Rapid workflow of mMR PET list-mode data processing using CUDA.

Melbourne, A., Eaton-Rosen, Z., Owen, D., Cardoso, J., Beckmann, J., Atkinson, D., ...Ourselin, S. (2015). Measuring Cortical Neurite-Dispersion and Perfusion in Preterm-Born Adolescents Using Multi-modal MRI.

Menys, A., Makanyanga, J., Plumb, A., Bhatnagar, G., Atkinson, D., Emmanuel, A., Taylor, S.A. (2015). Aberrant motility in unaffected small bowel is linked to inflammatory burden and patient symptoms in Crohn's disease.. Inflammatory Bowel Diseases, 22 (2), 424-432. doi:10.1097/MIB.0000000000000601

Menys, A., Tutein Nolthenius, C., Puylaert, C., Makanyanga, J., Gryspeerdt, E., Bhatnagar, G., ...Taylor, S. (2015). Quantified terminal ileal motility as a biomarker of Crohn’s Disease activity assessed using Magnetic Resonance Enterography: A prospective study.

Monszpart, A., Mellado, N., Brostow, G.J., Mitra, N.J. (2015). RAPter: Rebuilding Man-made Scenes with Regular Arrangements of Planes. ACM SIGGRAPH Computer Graphics, doi:10.1145/2766995

Morin, R., Eiben, B., Bidaut, L., Hipwell, J., Evans, A., Hawkes, D.J. (2015). 3D ULTRASOUND SIMULATION BASED ON A BIOMECHANICAL MODEL OF PRONE MRI IN BREAST CANCER IMAGING.

Mozumder, M., Tarvainen, T., Seppanen, A., Nissila, I., Arridge, S.R., Kolehmainen, V. (2015). Nonlinear approach to difference imaging in diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 20 (10), doi:10.1117/1.JBO.20.10.105001

Mylonas, D., Purver, M., Sadrzadeh, M., MacDonald, L., Griffin, L. (2015). The Use of English Colour Terms in Big Data.

Nedjati-Gilani, G., Alexander, D.C. (2015). Tissue Microstructure Imaging with Diffusion MRI. In Brain Mapping: An Encyclopedic Reference. (pp. 277-285). .

Norris, F.C., Siow, B.M., Cleary, J.O., Wells, J.A., De Castro, S.C.P., Ordidge, R.J., ...Alexander, D.C. (2015). Diffusion microscopic MRI of the mouse embryo: Protocol and practical implementation in the splotch mouse model.. MAGNETIC RESONANCE IN MEDICINE, 73 (2), 731-739. doi:10.1002/mrm.25145

Ourselin, S., Alexander, D.C., Westin, C.F., Cardoso, M.J. (2015). Preface. 24th International Conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015. Proceedings. Information processing in medical imaging : proceedings of the ... conference, 24 V-VII.

Ourselin, S., Alexander, D.C., Westin, C.F., Cardoso, M.J. (2015). Preface. .

Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H., O'Callaghan, J., Freeman, A., ...Alexander, D.C. (2015). Microstructural characterisation of normal and malignant human prostate tissue with VERDICT MRI. Investigative Radiology, 50 (4), 218-227. doi:10.1097/RLI.0000000000000115

Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H.U., O'Callaghan, J., Freeman, A., ...Alexander, D.C. (2015). Microstructural characterisation of normal and malignant human prostate tissue with vascular, extracellular, and restricted diffusion for cytometry in tumours magnetic resonance imaging.. Investigative Radiology, 50 (4), 218-227. doi:10.1097/RLI.0000000000000115

Panagiotaki, E., Ianus, A., Johnston, E., Chan, R., Stevens, N., Atkinson, D., ...Alexander, D. (2015). Optimised VERDICT MRI protocol for prostate cancer characterisation.

Panagiotaki, E., Ianus, A., Johnston, E., Chan, R.W., Atkinson, D., P.u.n.w.a.n.i., ...Alexander, D. (2015). Optimised VERDICT MRI protocol for prostate cancer characterisation.

Plumb, A.A.O., Menys, A., Makanyanga, J., Pendse, D., Bhatnagar, G., Atkinson, D., Taylor, S.A. (2015). Abdominal symptoms in Crohn’s disease are associated with aberrant global small bowel motility in non-inflamed bowel..

Plumb, A.A.O., Menys, A., Tutein Nolthenius, C., Puylaert, C., Tielbeek, J.A.W., Makanyanga, J., ...Atkinson, D. (2015). Prospective analysis of quantified terminal ileal motility using magnetic resonance enterography as a biomarker of active inflammation in Crohn’s disease..

Powell, S., Arridge, S.R., Leung, T.S. (2015). First-harmonic sensitivity functions for a linearised diffusion model of ultrasound-modulated optical tomography. PHOTONS PLUS ULTRASOUND: IMAGING AND SENSING 2015, 9323 doi:10.1117/12.2077435

Powell, S., Arridge, S.R., Leung, T.S. (2015). Gradient-based quantitative image reconstruction in ultrasound-modulated optical tomography: first harmonic measurement type in a linearised diffusion formulation. Medical Imaging, IEEE Transactions on, PP (99), 1. doi:10.1109/TMI.2015.2478742

Powell, S., Cooper, R.J., Hebden, J.C., Arridge, S.R. (2015). Dynamic image reconstruction in time-resolved diffuse optical tomography.

Protonotarios, E., Griffin, L. (2015). Discrimination scales do not account for large perceptual differences.

Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2015). Quantitative photoacoustic tomography using illuminations from a single direction. JOURNAL OF BIOMEDICAL OPTICS, 20 (3), doi:10.1117/1.JBO.20.3.036015

Reis, S., Eiben, B., Mertzanidou, T., Hipwell, J., Hermsen, M., van der Laak, J., ...Hawkes, D. (2015). Minimum Slice Spacing Required To Reconstruct 3D Shape For Serial Sections Of Breast Tissue For Comparison With Medical Imaging.

Rogers, T.W., Jaccard, N., Morton, E.J., Griffin, L.D. (2015). Detection of cargo container loads from X-ray images.

Sari, H., Erlandsson, K., Law, I., Larsson, H., Ourselin, S., Arridge, S., ...Hutton, B. (2015). Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel PVC method.

Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Ourselin, S., Arridge, S., Hutton, B.F. (2015). Incorporation of MRI-AIF Information For Improved Kinetic Modelling of Dynamic PET Data. IEEE Transactions on Nuclear Science,

Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Ourselin, S., Arridge, S., Hutton, B.F. (2015). Incorporation of MRI-AIF information for improved kinetic modeling of dynamic PET data.. IEEE Transactions on Nuclear Science,

Schneider, C., Desjardins, A.E., Gurusamy, K., Hawkes, D.J., Davidson, B.R. (2015). Laparoscopic Manipulation of a Probe-based Confocal Laser Endomicroscope Using a Steerable Intravascular Catheter. SURGICAL LAPAROSCOPY ENDOSCOPY & PERCUTANEOUS TECHNIQUES, 25 (2), E83-E85. doi:10.1097/SLE.0000000000000139

Schneider, C., Thompson, S., Totz, J., Song, Y., Johnsen, S., Stoyanov, D., ...Clarkson, M. (2015). EVALUATION OF A NOVEL SYSTEM FOR IMAGE GUIDED LAPAROSCOPIC LIVER SURGERY IN AN ANIMAL MODEL AND FIRST CLINICAL EXPERIENCE.

Schneider, T., Nejati-Gilani, G., Tachrount, M., Ying, L., Hill, A.M., Ciccarelli, O., ...Wheeler-Kingshott, C.A.M. (2015). Diffusion MRI reveals tissue specific changes in early and late stages of degeneration within the spinal cord..

Shemesh, N., Ianus, A., Alexander, D., Drobnjak, I. (2015). Double Oscillating Diffusion Encoding (DODE) augments microscopic anisotropy contrast.

Smigaj, W., Arridge, S., Betcke, T., Phillips, J., Schweiger, M. (2015). Solving Boundary Integral Problems with BEM++. ACM Transactions on Mathematical Software, doi:10.1145/2590830

Song, Y., Totz, J., Thompson, S., Johnsen, S., Barratt, D., Schneider, C., ...Hawkes, D. (2015). Locally rigid, vessel-based registration for laparoscopic liver surgery. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 10 (12), 1951-1961. doi:10.1007/s11548-015-1236-8

Stoeck, C.T., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). First and second order motion compensated spin-echo Diffusion Tensor Imaging of the human heart.

Stoeck, C.T., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). Second-order motion-compensated spin echo diffusion tensor imaging of the human heart.. Magnetic Resonance in Medicine, n/a. doi:10.1002/mrm.25784

Stoeck, C., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). Second order motion compensated spin-echo diffusion tensor imaging of the human heart.

Thompson, S., Totz, J., Song, Y., Stoyanov, D., Ourselin, S., Hawkes, D., Clarkson, M. (2015). Accuracy validation of an image guided laparoscopy system for liver resection.

Torrealdea, F., Rega, M., Evans, V., Punwani, S., Atkinson, D., Golay, X. (2015). Optimisation of glucoCEST MRI signal for applications in tumours.

Torrealdea, F., Rega, M., Evans, V., Punwani, S., Atkinson, D., Golay, X. (2015). Optimisation of glucoCEST MRI signal for applications in tumors.

Usman, M., Atkinson, D., Heathfield, E., Greil, G., Schaeffter, T., Prieto, C. (2015). Whole left ventricular functional assessment from two minutes free breathing multi-slice CINE acquisition. Physics in Medicine and Biology, 60 (7), N93-N107. doi:10.1088/0031-9155/60/7/N93

van't Wout, E., Gelat, P., Betcke, T., Arridge, S. (2015). A fast boundary element method for the scattering analysis of high-intensity focused ultrasound. JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 138 (5), 2726-2737. doi:10.1121/1.4932166

Vendhan, K., Bray, T.J.P., Atkinson, D., Punwani, S., Ioannou, Y., Sen, D., ...Hall-Craggs, M.A. (2015). The spectrum of ADC values in normal adolescent sacroiliac joints.

von Deuster, C., Stoeck, C., Genet, M., Toussaint, N., Atkinson, D., Kozerke, S. (2015). A reference dataset of in-vivo human left-ventricular fiber architecture in systole and diastole.

von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2015). A reference dataset of in-vivo human left-ventricular fiber architecture in systole and diastole.

von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2015). Spin echo versus stimulated echo diffusion tensor imaging of the in vivo human heart. Magnetic Resonance in Medicine, doi:10.1002/mrm.25998

Waithe, D., Rennert, P., Brostow, G., Piper, M.D.W. (2015). QuantiFly: Robust Trainable Software for Automated Drosophila Egg Counting. PLOS ONE, 10 (5), doi:10.1371/journal.pone.0127659

White, M.J., Thornton, J.S., Hawkes, D.J., Hill, D.L.G., Kitchen, N., Mancini, L., ...Yousry, T. (2015). Design, operation, and safety of single-room interventional MRI suites: Practical experience from two centers. Journal of Magnetic Resonance Imaging, 41 (1), 34-43. doi:10.1002/jmri.24577

White, M.J., Thornton, J.S., Hawkes, D.J., Hill, D.L.G., Kitchen, N., Mancini, L., ...Yousry, T. (2015). Design, operation, and safety of single-room interventional MRI suites: practical experience from two centers.. JOURNAL OF MAGNETIC RESONANCE IMAGING, 41 (1), 34-43. doi:10.1002/jmri.24577

White, M.J., Thornton, J.S., Hawkes, D.J., Hill, D.L.G., Kitchen, N., Mancini, L., ...Yousry, T. (2015). Design, Operation, and Safety of Single-Room Interventional MRI Suites: Practical Experience From Two Centers. JOURNAL OF MAGNETIC RESONANCE IMAGING, 41 (1), 34-43. doi:10.1002/jmri.24577

Young, A.L., Oxtoby, N.P., Huang, J., Marinescu, R.V., Daga, P., Cash, D.M., ...Alexander, D.C. (2015). Multiple orderings of events in disease progression. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 711-722. doi:10.1007/978-3-319-19992-4_56

Young, A.L., Oxtoby, N.P., Ourselin, S., Schott, J.M., Alexander, D.C. (2015). A simulation system for biomarker evolution in neurodegenerative disease. MEDICAL IMAGE ANALYSIS, 26 (1), 47-56. doi:10.1016/j.media.2015.07.004

2014

Alessandro, D., Canales-Rodriguez, E.J., Zhang, H., Dyrby, T.B., Alexander, D.C., Thiran, J.-.P. (2014). Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data. Neuroimage, 105 32-44. doi:10.1016/j.neuroimage.2014.10.026

Alexander, D., Assaf, Y. (2014). Advanced methods to study white matter microstructure. In Cohen-Adad, J., Wheeler-Kingshott, C.A.M. (Eds.), Quantitative MRI of the Spinal Cord. Academic Press.

Alexander, D.C., Zikic, D., Zhang, J., Zhang, H., Criminisi, A. (2014). Image quality transfer via random forest regression: Applications in diffusion MRI. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014. (pp. 225-232). Springer.

Allan, M., Thompson, S., Clarkson, M., Ourselin, S., Hawkes, D., Kelly, J., Stoyanov, D. (2014). 2D-3D pose tracking of rigid instruments in minimally invasive surgery.

Arridge, S.R., Betcke, M.M., Harhanen, L. (2014). Iterated preconditioned LSQR method for inverse problems on unstructured grids. INVERSE PROBLEMS, 30 (7), doi:10.1088/0266-5611/30/7/075009

Bailey, C., Vinnicombe, S., Panagiotaki, E., Waugh, S.A., Hipwell, J.H., Alexander, D.C., ...Evans, A. (2014). Modeling vascularity in breast cancer and surrounding stroma using diffusion MRI and intravoxel incoherent motion.

Bailey, C., Vinnicombe, S., Panagiotaki, E., Waugh, S., Hipwell, J.H., Whelehan, P., ...Hawkes, D.J. (2014). Modelling vasculature and cellular restriction in breast tumours using diffusion MRI.

Barnes, A., Morgan, C., Bainbridge, A., Smith, L., Rice, S., Atkinson, D., Punwani, S. (2014). Repeatability of whole-body T1 mapping using B1 corrected T1 mDIXON imaging.

Bousse, A., Jiao, J., Erlandsson, K., Pizarro, L., Thielemans, K., Atkinson, D., ...Hutton, B. (2014). 4-D PET joint image reconstruction/non-rigid motion estimation with limited MRI prior information.

Bousse, A., Jiao, J., Pizarro, L., Thielemans, K., Atkinson, D., Ourselin, S., ...Hutton, B.F. (2014). An algorithm for direct 4-D PET image reconstruction/non-rigid motion estimation with limited MRI prior information.

Bousse, A., Jiao, J., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Joint direct motion estimation/kinetic images reconstruction from gated PET data.

Bragman, F.J.S., McClelland, J.R., Modat, M., Ourselin, S., Hurst, J.R., Hawkes, D.J. (2014). Multi-scale Analysis of Imaging Features and Its Use in the Study of COPD Exacerbation Susceptible Phenotypes.

Brigadoi, S., Aljabar, P., Kuklisova-Murgasova, M., Arridge, S.R., Cooper, R.J. (2014). A 4D neonatal head model for diffuse optical imaging of pre-term to term infants.. NEUROIMAGE, 100 385-394. doi:10.1016/j.neuroimage.2014.06.028

Burgos, N., Cardoso, M.J., Thielemans, K., Duncan, J.S., Atkinson, D., Arridge, S.R., ...Ourselin, S. (2014). Attenuation correction synthesis for hybrid PETMR scanners: Validation for brain study applications.

Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Pedemonte, S., Dickson, J., ...Schott, J.M. (2014). Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 33 (12), 2332-2341. doi:10.1109/TMI.2014.2340135

Burgos, N., Thielemans, K., Cardoso, M.J., Markiewicz, P., Jiao, J., Dickson, J., ...Hutton, B.F. (2014). Effect of Scatter Correction When Comparing Attenuation Maps: Application to Brain PET/MR.

Butt, S., Menys, A., Atkinson, D., Plumb, A., Taylor, S.A., Zarate, N., Emmanuel, A. (2014). 148 Quantitative Assessment of Global Small Bowel Motility in Chronic Intestinal Pseudo-Obstruction and Controls: A Preliminary Study. Gastroenterology, 146 (5), S-41. doi:10.1016/s0016-5085(14)60143-8

Butt, S., Menys, A., Atkinson, D., Plumb, A., Taylor, S., Zarate, N., Emmanuel, A. (2014). Quantitative assessment of global small bowel motility in Chronic Intestinal Pseudo-Obstruction and controls: A Preliminary Study.

Chan, R., von Deuster, C., Stoeck, C., Harmer, J., Punwani, S., Ramachandran, N., ...Atkinson, D. (2014). High-Resolution Diffusion Tensor Imaging (DTI) of the human kidneys using a free-breathing multi-slice targeted-FOV approach. NMR in Biomedicine, 27 (11), 1300-1312. doi:10.1002/nbm.3190

Chan, R.W., von Deuster, C., Giese, D., Stoeck, C.T., Harmer, J., Aitken, A.P., ...Kozerke, S. (2014). Characterization and correction of eddy-current artifacts in unipolar and bipolar diffusion sequences using magnetic field monitoring. JOURNAL OF MAGNETIC RESONANCE, 244 74-84. doi:10.1016/j.jmr.2014.04.018

Clarkson, M.J., Zombori, G., Thompson, S., Totz, J., Song, Y., Espak, M., ...Ourselin, S. (2014). The NifTK Software Platform for Image Guided Interventions. International Journal of Computer Assisted Radiology and Surgery,

Clarkson, M., Zombori, G., Thompson, S., Totz, J., Song, Y., Espak, M., ...Ourselin, S. (2014). NifTK GUIs and Command Line Apps.

Cochran, J.M., Ban, H.Y., Busch, D.R., Schweiger, M.J., Kavuri, V.C., Pathak, S., ...Yodh, G. (2014). Multimodal structural priors for spatially-dense diffuse optical tomography of breast cancer.

Cruz, G., Atkinson, D., Kolbitsch, C., Schaeffter, T., Prieto, C. (2014). Comparison of Non-Rigid Motion Compensated Reconstructions for 3D Abdominal MRI.

Deuster, C.V., Stoeck, C., Buehrer, M., Harmer, J., Chan, R.W., Atkinson, D., Kozerke, S. (2014). Free-breathing cardiac DTI with simultaneous multi-slice excitation.

Dikaios, N., Alkalbani, J., Sidhu, H., Fujiwara, T., Abd-Alazeez, M., Kirkham, A., ...Halligan, S. (2014). Logistic regression model for diagnosis of transition zone prostate cancer on multi-parametric MRI. European Radiology, 25 (2), 523-532. doi:10.1007/s00330-014-3386-4

Dikaios, N., Arridge, S., Hamy, V., Punwani, S., Atkinson, D. (2014). Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhanced MRI.. Medical Image Analysis, 18 (7), 989-1001. doi:10.1016/j.media.2014.05.001

Dikaios, N., Atkinson, D. (2014). Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhancement MRI. Medical Image Analysis, 18 (7), 989-1001. doi:10.1016/j.media.2014.05.001

Dikaios, N., Tremoulheac, B., Menys, A., Arridge, S., Atkinson, D. (2014). Discrete shearlets as a sparsifying transform in a split Bregman reconstruction of low-rank plus sparse component from undersampled (k, t)-space small bowel data.

Drobnjak, I., Cruz, G., Alexander, D.C. (2014). Corrigendum to "Optimising oscillating waveform-shape for pore size sensitivity in diffusion-weighted MR" [Micropor. Mesopor. Mater. 178 (2013) 11-14] (DOI:10.1016/j.micromeso.2013.03.004). MICROPOROUS AND MESOPOROUS MATERIALS, 196 360. doi:10.1016/j.micromeso.2014.03.001

Ehrhardt, M.J., Arridge, S.R. (2014). Vector-Valued Image Processing by Parallel Level Sets. Image Processing, IEEE Transactions on, 23 9-18. doi:10.1109/TIP.2013.2277775

Ehrhardt, M.J., Thielemans, K., Pizarro, L., Markiewicz, P., Atkinson, D., Ourselin, S., ...Arridge, S.R. (2014). Joint Reconstruction of PET-MRI by Parallel Level Sets.

Ehrhardt, M., Thielemans, K., Pizarro, L., Markiewicz, P., Atkinson, D., Ourselin, S., ...Arridge, S. (2014). Correct A Priori Information Modelling for Sparse MRI Reconstruction.

Eiben, B., Vavourakis, V., Hipwell, J.H., Kabus, S., Lorenz, C., Buelow, T., Hawkes, D.J. (2014). Breast deformation modelling: comparison of methods to obtain a patient specific unloaded configuration.

Ferizi, U., Schneider, T., Panagiotaki, E., Tariq, M., Zhang, H., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Ranking diffusion MRI models for fibre dispersion using in vivo human brain data..

Frangi, A., Friboulet, D., Ayache, N., Delingette, H., Glatard, T., Hoogendoorn, C., ...Martelli, Y. (2014). Image-based modelling. In Coveney, P., Diaz-Zuccarini, V., Hunter, P., Viceconti, M. (Eds.), Computational Biomedicine. Oxford University Press.

Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B.F. (2014). Efficient determination of the uncertainty for the optimization of SPECT system design: a subsampled fisher information matrix.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 33 (3), 618-635. doi:10.1109/TMI.2013.2292805

Griffin, L.D. (2014). Metamerism? What metamerism?.

Grove, J., Metcalf, D.J., Knight, A.E., Wavre-Shapton, S.T., Sun, T., Protonotarios, E.D., ...Marsh, M. (2014). Flat clathrin lattices: stable features of the plasma membrane.. MOLECULAR BIOLOGY OF THE CELL, 25 (22), 3581-3594. doi:10.1091/mbc.E14-06-1154

Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2014). Single-shell diffusion MRI NODDI with in vivo cervical cord data.

Hamy, V., Dikaios, N., Punwani, S., Melbourne, A., Latifoltojar, A., Makanyanga, J., ...Taylor, S. (2014). Respiratory motion correction in dynamic MRI using Robust Data Decomposition Registration – Application to DCE-MRI. Medical Image Analysis, 18 (2), 301-313. doi:10.1016/j.media.2013.10.016

Hamy, V., Modat, M., Dikaios, N., Cleary, J., Punwani, S., Shipley, R., ...Melbourne, A. (2014). Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function.

Hamy, V., Modat, M., Shipley, R., Dikaios, N., Cleary, J.O., Punwani, S., ...Melbourne, A. (2014). Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function..

Han, L., Hawkes, D.J., Barratt, D.C. (2014). A hybrid biomechanical model-based image registration method for sliding objects.

Han, L., Hipwell, J., Eiben, B., Barratt, D.C., Ourselin, S., Hawkes, D.J. (2014). A Non-linear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images. IEEE Transactions on Medical Imaging, doi:10.1109/TMI.2013.2294539

Harmer, J., Chan, R.W., Stoeck, C.T., Deuster, C.V., Atkinson, D., Kozerke, S. (2014). Correction of off-resonance distortions in in-vivo cardiac diffusion tensor imaging.

Helbren, E., Roth, H.R., Hampshire, T.E., Pickhardt, P.J., Taylor, S.A., Hawkes, D.J., Halligan, S. (2014). CT colonography: clinical evaluation of a method for automatic coregistration of polyps at follow-up surveillance studies.. RADIOLOGY, 273 (2), 417-424. doi:10.1148/radiol.14140473

Hill, D.L.G., Schwarz, A.J., Isaac, M., Pani, L., Vamvakas, S., Hemmings, R., ...Beckett, L. (2014). Coalition Against Major Diseases/European Medicines Agency biomarker qualification of hippocampal volume for enrichment of clinical trials in predementia stages of Alzheimer's disease.. ALZHEIMERS & DEMENTIA, 10 (4), 421-429. doi:10.1016/j.jalz.2013.07.003

Hoad, C., Hamy, V., Garsed, K., Marciani, L., Spiller, R., Taylor, S., ...Menys, A. (2014). Preliminary investigations of colonic motility from Cine MRI; use of registration techniques for quantitative analysis.

Huynh, N., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2014). Patterned interrogation scheme for compressed sensing photoacoustic imaging using a Fabry Perot planar sensor.

Jaccard, N., Griffin, L.D., Keser, A., Macown, R.J., Super, A., Veraitch, F.S., Szita, N. (2014). Automated method for the rapid and precise estimation of adherent cell culture characteristics from phase contrast microscopy images.. BIOTECHNOLOGY AND BIOENGINEERING, 111 (3), 504-517. doi:10.1002/bit.25115

Jaccard, N., Macown, R.J., Super, A., Griffin, L.D., Veraitch, F.S., Szita, N. (2014). Automated and online characterization of adherent cell culture growth in a microfabricated bioreactor.. JALA, 19 (5), 437-443. doi:10.1177/2211068214529288

Jaccard, N., Rogers, T.W., Griffin, L.D. (2014). Automated detection of cars in transmission X-ray images of freight containers.

Jacobs, J.G., Panagiotaki, E., Alexander, D.C. (2014). Gleason Grading of Prostate Tumours with Max-Margin Conditional Random Fields.

Jiao, J., Bousse, A., Thielemans, K., Markiewicz, P., Burgos, N., Atkinson, D., ...Ourselin, S. (2014). Joint parametric reconstruction and motion correction framework for dynamic PET data.

Johnson, S.P., Schneider, C., Desjardins, A., Walker-Samuel, S., Hawkes, D. (2014). Confocal fluorescence endomicroscopy in vivo for the detection of tumour microenvironment and healthy tissue margin. EUROPEAN JOURNAL OF CANCER, 50 S168-S169. doi:10.1016/S0959-8049(14)50618-1

Jones, G., Clancy, N., Arridge, S., Elson, D., Stoyanov, D. (2014). Deblurring multispectral laparoscopic images.

Jones, G., Clancy, N., Arridge, S., Elson, D., Stoyanov, D. (2014). Deblurring multispectral laparoscopic images.

Kaden, E., Kruggel, F., Alexander, D.C. (2014). Bayesian Estimation of the Axonal Diffusion Coefficients in Brain White Matter.

Kakkar, L., Atkinson, D., Chan, R.W., Drobnjak, I. (2014). Imaging brain microstructure: Application of oscillating gradient diffusion sequences on a clinical MRI scanner.

Kazantsev, D., Ourselin, S., Hutton, B.F., Lionheart, W.R.B., Arridge, S.A. (2014). A novel technique to incorporate structural prior information into multi-modal tomographic reconstruction. Inverse problems, 30

Kowalik, G., Knight, D., Steeden, J., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of cardiac time intervals using high temporal resolution real-time spiral phase contrast with UNFOLD-SENSE.

Kowalik, G., Knight, D., Steeden, J., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of Cardiac Time Intervals Using High Temporal Resolution Real-Time Spiral Phase Contrast with UNFOLD-SENSE.

Kowalik, G.T., Knight, D.S., Steeden, J.A., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of cardiac time intervals using high temporal resolution real-time spiral phase contrast with UNFOLDed-SENSE. Magnetic Resonance in Medicine, 73 (2), 749-756. doi:10.1002/mrm.25183

Kumar, S., Lockwood, N., Ramel, M.C., Correia, T., Ellis, M., Alexandrov, Y., ...Dallman, M.J. (2014). In vivo multiplexed OPT and FLIM OPT of an adult zebrafish cancer disease model.

Kunz, N., Zhang, H., Vasung, L., O'Brien, K.R., Assaf, Y., Lazeyras, F., ...Hüppi, P.S. (2014). Assessing white matter microstructure of the newborn with multi-shell diffusion MRI and biophysical compartment models.. Neuroimage, doi:10.1016/j.neuroimage.2014.03.057

Latifoltojar, A., Dikaios, N., Ridout, A., Moore, C., Illing, R., Kirkham, A., ...Atkinson, D. (2014). Transrectal ultrasound guided biopsy: effect on natural history of multi-parametric MRI signal and derived quantitative parameters.

Lopez-Tovar, H., Brostow, G.J. (2014). Learning Sketch-based 3D Modelling From A User's Sketching Gestures.

Lopez-Tovar, H., Brostow, G.J. (2014). Learning Sketch-based 3D Modelling From A User's Sketching Gestures.

Lundell, H., Dyrby, T.B., Alexander, D.C. (2014). High angular resolution diffusion imaging with stimulated echoes: Compensation and correction in experiment design and analysis. NMR IN BIOMEDICINE, 27 (8), 918-925. doi:10.1002/nbm.3137

Mac Aodha, O., Campbell, N.D.F., Kautz, J., Brostow, G.J. (2014). Hierarchical Subquery Evaluation for Active Learning on a Graph.

Mac Aodha, O., Stathopoulos, V., Terry, M., Jones, K.E., Brostow, G.J., Girolami, M. (2014). Putting the Scientist in the Loop - Accelerating Scientific Progress with Interactive Machine Learning.

Malone, E., dos Santos, G.S., Holder, D., Arridge, S. (2014). Multifrequency Electrical Impedance Tomography Using Spectral Constraints.

Malone, E., Jehl, M., Arridge, S., Betcke, T., Holder, D. (2014). Stroke type differentiation using spectrally constrained multifrequency EIT: evaluation of feasibility in a realistic head model. Physiological measurement, 35 (6), 1051-.

Manber, R., Atkinson, D., Barnes, A., Hutton, B., O'Meara, C., Ourselin, S., ...Thielemans, K. (2014). Validation of a PET-derived Respiratory Signal by Comparison with an MRI Pencil-Beam Navigator Signal in Simultaneous PET/MR.

Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2014). Initial evaluation of a practical PET respiratory motion correction method in clinical simultaneous PET/MRI.

Markiewicz, P.J., Thielemans, K., Ehrhardt, M.J., Jiao, J., Burgos, N., Atkinson, D., ...Ourselin, S. (2014). High throughput CUDA implementation of accurate geometric modelling for iterative reconstruction of PET data.

Markiewicz, P., Thielemans, K., Burgos, N., Manber, R., Jiao, J., Barnes, A., ...Ourselin, S. (2014). Image reconstruction of mMR PET data using the open source software STIR..

Markiewicz, P., Thielemans, K., Burgos, N., Manber, R., Jiao, J., Barnes, A., ...Ourselin, S. (2014). Image reconstruction of mMR PET data using the open source software STIR.

Martin, J., McClelland, J., Champion, B., Hawkes, D.J. (2014). Building surrogate-driven motion models from cone-beam CT via surrogate-correlated optical flow.

Martin, J., McClelland, J., Yip, C., Thomas, C., Hartill, C., Ahmad, S., ...Hawkes, D. (2014). Fully-deformable patient motion models from cone-beam CT for radiotherapy applications.

McClelland, J.R., Champion, B.A.S., Hawkes, D.J. (2014). Combining Image Registration, Respiratory Motion Modelling, and Motion Compensated Image Reconstruction.

Menys, A., Butt, S., Emmanuel, A., Zarate, N., Atkinson, D., Plumb, A., Taylor, S.A. (2014). Quantitative assessment of global small bowel motility in Chronic Intestinal Pseudo-Obstruction and controls: A Preliminary Study.

Menys, A., Hamy, V., Hoad, C., Makanyanga, J., Odille, F., Gowland, P., ...Atkinson, D. (2014). Dual Registration of Abdominal Motion in free-breathing data sets acquired using dynamic MRI.

Menys, A., Hamy, V., Makanyanga, J., Hoad, C., Gowland, P., Odille, F., ...Atkinson, D. (2014). Dual registration of abdominal motion for motility assessment in free-breathing data sets acquired using dynamic MRI. Physics in Medicine and Biology, 59 4603-4619. doi:10.1088/0031-9155/59/16/4603

Menys, A., Makanyanga, J., Pendse, D., Atkinson, D., Taylor, S. (2014). Changes in Global Small Bowel Motility in Response to Inflammation in Crohn’s Disease.

Menys, A., Plumb, A., Atkinson, D., Taylor, S.A. (2014). The challenge of segmental small bowel motility quantitation using Magnetic Resonance Enterography. British Journal of Radiology, 87 20140330.-. doi:10.1259/bjr.20140330

Mertzanidou, T., Hipwell, J., Dalmis, M., Platel, B., Van Der Laak, J., Mann, R., ...Hawkes, D. (2014). Towards spatial correspondence between specimen and in-vivo breast imaging.

Mertzanidou, T., Hipwell, J., Johnsen, S., Han, L., Eiben, B., Taylor, Z., ...Bick, U. (2014). MRI to X-ray mammography intensity-based registration with simultaneous optimisation of pose and biomechanical transformation parameters.. MEDICAL IMAGE ANALYSIS, 18 (4), 674-683. doi:10.1016/j.media.2014.03.003

Mozumder, M., Tarvainen, T., Kaipio, J.P., Arridge, S.R., Kolehmainen, V. (2014). Compensation of modeling errors due to unknown domain boundary in diffuse optical tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 31 (8), 1847-1855. doi:10.1364/JOSAA.31.001847

Nagy, Z., Ganepola, T., Sereno, M., Weiskopf, N., Alexander, D. (2014). Combining HARDI datasets with more than one b-value improves diffusion MRI-based cortical parcellation.

Nedjati-Gilani, G.L., Hall, M.G., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Learning microstructure parameters from diffusion-weighted MRI using random forests.

Nedjati-Gilani, G.L., Schneider, T., Hall, M.G., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Machine learning based compartment models with permeability for white matter microstructure imaging.

Newell, A.J., Griffin, L.D. (2014). Writer identification using oriented Basic Image Features and the Delta encoding. PATTERN RECOGNITION, 47 (6), 2255-2265. doi:10.1016/j.patcog.2013.11.029

Odille, F., Escanye, J., Atkinson, D., Bonnemains, L., Felblinger, J. (2014). Nonrigid registration improves MRI T2 quantification in heart transplant patient follow-up. Journal of Magnetic Resonance Imaging, doi:10.1002/jmri.24741

Oxtoby, N.P., Young, A.L., Daga, P., Cash, D.M., Ourselin, S., Schott, J.M., ...Alexander, D.C. (2014). Learning imaging biomarker trajectories from noisy Alzheimer's disease data using a Bayesian multilevel model.

Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H., Atkinson, D., Punwani, S., ...Alexander, D.C. (2014). Microstructural characterisation of normal and malignant human prostate tissue with VERDICT-MRI.

Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Pedley, R.B., Lythgoe, M.F., Alexander, D.C. (2014). In vivo characterisation of tumour microstructure with VERDICT MRI.

Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Rajkumarc, V., Pedley, R., ...Alexander, D.C. (2014). Non-invasive quantification of solid tumor microstructure using VERDICT MRI. Cancer Research, doi:10.1158/0008-5472.CAN-13-2511

Pendse, D., Makanyanga, J., Plumb, A., Atkinson, D., Taylor, S. (2014). Diffusion MRI in Crohn's disease: Comparison with fecal calprotectin and MR-Enterography.

Pich, E.M., Jeromin, A., Frisoni, G.B., Hill, D., Lockhart, A., Schmidt, M.E., ...Potter, W.Z. (2014). Imaging as a biomarker in drug discovery for Alzheimer's disease: is MRI a suitable technology?. ALZHEIMERS RESEARCH & THERAPY, 6 (4), doi:10.1186/alzrt276

Protonotarios, E.D., Baum, B., Johnston, A., Hunter, G.L., Griffin, L.D. (2014). An absolute interval scale of order for point patterns.. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 11 (99), doi:10.1098/rsif.2014.0342

Protonotarios, E., Johnston, A., Griffin, L.D. (2014). An absolute interval scale for approximate order of 2D point patterns.

P.r.o.v.e.r.b.i.o., S.i.o.w., Panagiotaki, E., W.a.l.k.e.r.-.S.a.m.u.e.l., L.y.t.h.g.o.e., Gibson, A., Alexander, D.C. (2014). Mathematical models of colorectal tumour microstructure informed by oscillating gradients diffusion MRI.

Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2014). A Bayesian approach to spectral quantitative photoacoustic tomography. INVERSE PROBLEMS, 30 (6), doi:10.1088/0266-5611/30/6/065012

Pulkkinen, A., Kolehmainen, V., Kaipio, J.P., Cox, B.T., Arridge, S.R., Tarvainen, T. (2014). APPROXIMATE MARGINALIZATION OF UNKNOWN SCATTERING IN QUANTITATIVE PHOTOACOUSTIC TOMOGRAPHY. INVERSE PROBLEMS AND IMAGING, 8 (3), 811-829. doi:10.3934/ipi.2014.8.811

Richardson, S., Siow, B., Panagiotaki, E., Schneider, T., Lythgoe, M.F., Alexander, D.C. (2014). Viable and fixed white matter: diffusion magnetic resonance comparisons and contrasts at physiological temperature.. MAGNETIC RESONANCE IN MEDICINE, 72 (4), 1151-1161. doi:10.1002/mrm.25012

Rogers, T.W., Ollier, J., Morton, E.J., Griffin, L.D. (2014). Reduction of Wobble Artefacts in Images From Mobile Transmission X-ray Vehicle Scanners.

Roth, H.R., Hampshire, T.E., Helbren, E., Hu, M., Vega, R., Halligan, S., Hawkes, D.J. (2014). Computer-assisted polyp matching between optical colonoscopy and CT colonography: a phantom study. MEDICAL IMAGING 2014: IMAGE-GUIDED PROCEDURES, ROBOTIC INTERVENTIONS, AND MODELING, 9036 doi:10.1117/12.2042860

Sabczynski, J., Barschdorf, H., Bülow, T., Cardoso, M.J., Cardoso, J.S., Clarke, A., ...Hipwell, J. (2014). PICTURE: Predicting the cosmetic outcome of breast cancer surgery.

Sahraian, M.A., Wottschel, V., Calabrese, M., Eshaghi, A., Alexander, D., Ciccarelli, O. (2014). Distinction between neuromyelitis optica and multiple sclerosis using multi-voxel pattern classification.

Sari, H., Erlandsson, K., Barnes, A., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Modelling the impact of injection time on the bolus shapes in PET-MRI AIF conversion.

Sari, H., Erlandsson, K., Barnes, A., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2014). Exploiting an MRI Derived Arterial Input Function to Improve the PET Simultaneous Estimation Method: Validation of Assumptions.

Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Incorporation of MRI-AIF information for improved kinetic modelling of dynamic PET data.

Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Incorporation of MRI-AIF information for improved kinetic modelling of dynamic PET data..

Schweiger, M., Arridge, S. (2014). The Toast plus plus software suite for forward and inverse modeling in optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 19 (4), doi:10.1117/1.JBO.19.4.040801

Soloviev, V.Y., Correia, T.M., Arridge, S.R. (2014). Fluorescence lifetime imaging in turbid media. In Fluorescence Lifetime Spectroscopy and Imaging: Principles and Applications in Biomedical Diagnostics. (pp. 283-319). .

Stoeck, C., Kalinowska, A., von Deuster, C., Harmer, J., Chan, R., Niemann, M., ...Mekkaoui, C. (2014). Dual-phase cardiac diffusion tensor imaging with strain correction. PLoS One, 9 (9), e107159-. doi:10.1371/journal.pone.0107159

Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M., Zhang, H. (2014). NODDI with dispersion anisotropy.

Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M., Zhang, H. (2014). In vivo estimation of dispersion anisotropy of neurites using diffusion MRI. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014. (pp. 241-248). Springer.

Tariq, M., Schneider, T., Alexander, D., Wheeler-Kingshott, C., Zhang, H. (2014). NODDI with dispersion anisotropy.

Totz, J., Thompson, S., Stoyanov, D., Gurusamy, K., Davidson, B., Hawkes, D., Clarkson, M. (2014). Fast semi-dense surface reconstruction from stereoscopic video in laparoscopic surgery..

Tremoulheac, B.R., Atkinson,, D., Arridge,, S. (2014). Low-rank and (x-f)-space sparsity via fast composite splitting for accelerated dynamic MR imaging.

Tremoulheac, B.R., Dikaios,, N., Atkinson,, D., Arridge, S. (2014). Dynamic MR image reconstruction–separation from undersampled (k,t)-space via low-rank plus sparse prior. IEEE Transactions on Medical Imaging, 33 (8), 1689-1701. doi:10.1109/TMI.2014.2321190

Usman, M., Atkinson, D., Greil, G., Schaeffter, T., Prieto, C. (2014). Motion corrected sparse SENSE for highly accelerated multi slice cardiac CINE.

Usman, M., Atkinson, D., Kolbitsch, C., Schaeffter, T., Prieto, C. (2014). Manifold learning based ECG-free free breathing cardiac CINE MRI. Journal of Magnetic Resonance Imaging, 41 (6), 1521-1527. doi:10.1002/jmri.24731

Usman, M., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Manifold Learning based ECG-free free breathing cardiac MRI for highly accelerated CINE.

Usman, M., Baumgartner, C., King, A., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Achieving 3D CINE from free breathing multi-slice 2D acquisitions via Simultaneous Groupwise Manifold Alignment.

Usman, M., Vaillant, G., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Compressive Manifold Learning: Estimating One-Dimensional Respiratory Motion Directly from Undersampled k-Space Data. MAGNETIC RESONANCE IN MEDICINE, 72 (4), 1130-1140. doi:10.1002/mrm.25010

Vendhan, K., Atkinson, D., Sen, D., Fishe, C., Ioannou, Y., Bassett, P., Hall-Craggs, M. (2014). A NOVEL METHOD FOR QUANTIFYING INFLAMMATION OF SACROILIITIS IN JUVENILE ARTHRITIS.

Wang, P., Arridge, S.R., Jiang, M. (2014). Radiative transfer equation for media with spatially varying refractive index. PHYSICAL REVIEW A, 90 (2), doi:10.1103/PhysRevA.90.023803

Wolz, R., Schwarz, A.J., Yu, P., Cole, P.E., Rueckert, D., Jack, C.R., ...Hill, D. (2014). Robustness of automated hippocampal volumetry across magnetic resonance field strengths and repeat images. Alzheimer's and Dementia, 10 (4), 430-438.e2. doi:10.1016/j.jalz.2013.09.014

Wottschel, V., Alexander, D.C., Chard, D.T., Ciccarelli, O., Miller, D.H. (2014). Prediction of time between CIS onset and clinical conversion to MS using Random Forests.

Wottschel, V., Alexander, D.C., Kwok, P.P., Chard, D.T., Thompson, A.J., Miller, D.H., Ciccarelli, O. (2014). Predicting outcome in clinically isolated syndrome using machine learning. NeuroImage,

Young, A.L., Oxtoby, N.P., Daga, P., Cash, D.M., Fox, N.C., Ourselin, S., ...Alzheimer’s Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2014). A data-driven model of biomarker changes in sporadic Alzheimer's disease.. BRAIN, 137 2564-2577. doi:10.1093/brain/awu176

Yu, P., Sun, J., Wolz, R., Stephenson, D., Brewer, J., Fox, N.C., ...Schwarz, A.J. (2014). Operationalizing hippocampal volume as an enrichment biomarker for amnestic mild cognitive impairment trials: effect of algorithm, test-retest variability, and cut point on trial cost, duration, and sample size. NEUROBIOLOGY OF AGING, 35 (4), 808-818. doi:10.1016/j.neurobiolaging.2013.09.039

2013

Alexander, D.C., Dyrby, T.B. (2013). Diffusion imaging with stimulated echoes: signal models and experiment design. ArXiv,

Allan, M., Ourselin, S., Thompson, S., Hawkes, D.J., Kelly, J., Stoyanov, D. (2013). Toward detection and localization of instruments in minimally invasive surgery.. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 60 (4), 1050-1058. doi:10.1109/TBME.2012.2229278

Allan, M., Ourselin, S., Thompson, S., Hawkes, D.J., Kelly, J., Stoyanov, D. (2013). Toward Detection and Localization of Instruments in Minimally Invasive Surgery.. IEEE Trans. Biomed. Engineering, 60 1050-1058. doi:10.1109/TBME.2012.2229278

Arridge, S.R., Egger, H., Schlottbom, M. (2013). Preconditioning of complex symmetric linear systems with applications in optical tomography. APPLIED NUMERICAL MATHEMATICS, 74 35-48. doi:10.1016/j.apnum.2013.06.008

Assaf, Y., Alexander, D.C., Jones, D.K., Bizzi, A., Behrens, T.E.J., Clark, C.A., ...Knoesche, T.R. (2013). The CONNECT project: Combining macro- and micro-structure. NEUROIMAGE, 80 273-282. doi:10.1016/j.neuroimage.2013.05.055

Boone, D.J., Halligan, S., Roth, H.R., Hampshire, T.E., Helbren, E., Slabaugh, G.G., ...Punwani, S. (2013). CT colonography: external clinical validation of an algorithm for computer-assisted prone and supine registration.. RADIOLOGY, 268 (3), 752-760. doi:10.1148/radiol.13122083

Bourne, R.M., Panagiotaki, E., Bongers, A., Sved, P., Watson, G., Alexander, D.C. (2013). Information theoretic ranking of four models of diffusion attenuation in fresh and fixed prostate tissue ex vivo. Magnetic Resonance in Medicine, doi:10.1002/mrm.25032

Brock, K., Dong, L., Hawkes, D. (2013). TU‐G‐WAB‐01: Advanced Applications in Deformable Registration. Medical Physics, 40 (6), 455-456. doi:10.1118/1.4815460

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Ferizi, U., Schneider, T., Tariq, M., Wheeler-Kingshott, C.A.M., Zhang, H., Alexander, D. (2013). The Importance of Being Dispersed: a Statistical Ranking of Diffusion MRI Models for Fibre Dispersion using In Vivo Brain Data. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013. (pp. 74-81). .

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Kearney, H., Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M., ...Miller, D.H. (2013). Neurite orientation dispersion and density imaging in the multiple sclerosis spinal cord..

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Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Pedley, R., Lythgow, M.F., Alexander, D.C. (2013). In vivo characterisation of colorectal tumour microstructure with DW-MRI.

Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, S.P., Pedley, R.B., Lythgoe, M.F., Alexander, D.C. (2013). In vivo characterisation of tumour microstructure with VERDICT MRI.

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Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M., Zhang, H. (2013). Assessing scan-rescan reproducibility of the parameter estimates from NODDI.

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Tremoulheac, B., Atkinson, D., Arridge, S. (2013). Fast dynamic MRI via nuclear norm minimization and accelerated proximal gradient.

von Deuster, C., Stoeck, C.T., Giese, D., Harmer, J., Chan, R.W., Atkinson, D., Kozerke, S. (2013). Concurrent dual-slice cardiac DTI of the in-vivo human heart.

Wang, T., Zhang, H., Hall, M.G., Alexander, D.C. (2013). The Influence of Macroscopic and Microscopic Fibre Orientation Dispersion on Diffusion MR Measurements: A Monte-Carlo Simulation Study.

Winston, G., Micallef, C., Symms, M., Alexander, D.C., Duncan, J.S., Zhang, H. (2013). Advanced diffusion imaging sequences could aid assessing patients with focal cortical dysplasia and epilepsy. Epilepsy Research, doi:10.1016/j.eplepsyres.2013.11.004

Winston, G.P., Symms, M.R., Alexander, D.C., Duncan, J.S., Zhang, H. (2013). Clinical utility of NODDI in assessing patients with epilepsy due to focal cortical dysplasia.

Wottschel, V., Alexander, D.C., Chard, D.T., Miller, D.H., Ciccarelli, O. (2013). Prediction of Second Clinical Attack in CIS patients using SVMs.

Wottschel, V., Ciccarelli, O., Chard, D.T., Miller, D.H., Alexander, D.C. (2013). Prediction of second neurological attack in patients with clinically isolated syndrome using support vector machines.

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Griffin, L.D., Elangovan, P., Mundell, A., Hezel, D.C. (2012). Improved segmentation of meteorite micro-CT images using local histograms. COMPUTERS & GEOSCIENCES, 39 129-134. doi:10.1016/j.cageo.2011.07.002

Hampshire, T., Roth, H., Boone, D., Slabaugh, G., Halligan, S., Hawkes, D. (2012). Prone to Supine CT Colonography Registration Using a Landmark and Intensity Composite Method. Abdominal Imaging. Computational and Clinical Applications, 1-9.

Hamy, V., Melbourne, A., Tremoulheac, B., Punwani, S., Atkinson, D. (2012). Registration of DCE-MRI using robust data decomposition.

Hamy, V., Walker-Samuel, S., Atkinson, D., Punwani, S. (2012). Apparent diffusion coefficient estimation in prostate DW-MRI using maximum likelihood.

Han, L., Hipwell, J.H., Tanner, C., Taylor, Z., Mertzanidou, T., Cardoso, J., ...Hawkes, D.J. (2012). Development of patient-specific biomechanical models for predicting large breast deformation.. PHYSICS IN MEDICINE AND BIOLOGY, 57 (2), 455-472. doi:10.1088/0031-9155/57/2/455

Hawkes, D.J., Mertzanidou, T., Hipwell, J., Atkinson, D., Roth, H., Hampshire, T. (2012). Establishing spatial correspondence for the analysis of images from highly deforming anatomy.

Hipwell, J.H., Griffin, L.D., Whelehan, P.J., Song, W., Zhang, X., Lesniak, J.M., ...Hawkes, D.J. (2012). Characterizing breast phenotype with a novel measure of fibroglandular structure.

Huang, J., Alexander, D. (2012). Probabilistic event cascades for Alzheimer's disease. Advances in Neural Information Processing Systems, 4 3095-3103.

Hu, M., Penney, G., Figl, M., Edwards, P., Bello, F., Casula, R., ...Hawkes, D. (2012). Reconstruction of a 3D surface from video that is robust to missing data and outliers: application to minimally invasive surgery using stereo and mono endoscopes.. MEDICAL IMAGE ANALYSIS, 16 (3), 597-611. doi:10.1016/j.media.2010.11.002

Hu, Y., Ahmed, H.U., Carter, T., Arumainayagam, N., Lecornet, E., Barzell, W., ...Villers, A. (2012). A biopsy simulation study to assess the accuracy of several transrectal ultrasonography (TRUS)-biopsy strategies compared with template prostate mapping biopsies in patients who have undergone radical prostatectomy.. BJU INTERNATIONAL, 110 (6), 812-820. doi:10.1111/j.1464-410X.2012.10933.x

Hu, Y., Ahmed, H.U., Taylor, Z., Allen, C., Emberton, M., Hawkes, D., Barratt, D. (2012). MR to ultrasound registration for image-guided prostate interventions.. MEDICAL IMAGE ANALYSIS, 16 (3), 687-703. doi:10.1016/j.media.2010.11.003

Ianus, A., Siow, B., Drobnjak, I., Zhang, H., Alexander, D.C. (2012). Gaussian Phase Distribution Approximations of the Square WaveOscillating Gradient Spin-Echo (SWOGSE) Diffusion Signal.

Kazantsev, D., Arridge, S.R., Pedemonte, S., Bousse, A., Erlandsson, K., Hutton, B.F., Ourselin, S. (2012). An anatomically driven anisotropic diffusion filtering method for 3D SPECT reconstruction.. PHYSICS IN MEDICINE AND BIOLOGY, 57 (12), 3793-3810. doi:10.1088/0031-9155/57/12/3793

Kleinnijenhuis, M., Barth, M., Alexander, D.C., van Cappellen van Walsum, A.M., Norris, D.G. (2012). Structure Tensor Informed Fiber Tractography (STIFT) by combining gradient echo MRI and diffusion weighted imaging. NeuroImage, 59 (4), 3941-3954. doi:10.1016/j.neuroimage.2011.10.078

Kolehmainen, V., Schweiger, M., Nissilä, I., Tarvainen, T., Arridge, S.R., Kaipio, J.P. (2012). Approximation errors and model reduction in three-dimensional diffuse optical tomography.

Kondermann, D., Abraham, S., Brostow, G., Förstner, W., Gehrig, S., Imiya, A., ...Mayer, H. (2012). On performance analysis of optical flow algorithms.

Kowalik, G., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A., Muthurangu, V. (2012). Real time flow with fast GPU reconstruction for continuous assessment of cardiac output..

Kowalik, G.T., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). Continuous assessment of cardiac output during exercise using real time flow with fast GPU reconstruction.. Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance, 14 (Suppl 1), P232. doi:10.1186/1532-429x-14-s1-p232

Kowalik, G.T., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). Real time flow with fast GPU reconstruction for continuous assessment of cardiac output.. Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance, 14 (Suppl 1), W63. doi:10.1186/1532-429x-14-s1-w63

Kowalik, G.T., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). Continuous assessment of cardiac output during exercise using real time flow with fast GPU reconstruction.

Kowalik, G.T., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). Real time flow with fast GPU reconstruction for continuous assessment of cardiac output.

Kowalik, G.T., Steeden, J.A., Pandya, B., Odille, F., Atkinson, D., Taylor, A., Muthurangu, V. (2012). Real-time flow with fast GPU reconstruction for continuous assessment of cardiac output. Journal of Magnetic Resonance Imaging, 36 (6), 1477-1482. doi:10.1002/jmri.23736

Kwok, P.P., Ciccarelli, O., Chard, D.T., Miller, D.H., Alexander, D.C. (2012). Predicting clinically definite multiple sclerosis from onset using SVM.

Lecornet, E., Ahmed, H.U., Hu, Y., Moore, C.M., Nevoux, P., Barratt, D., ...Emberton, M. (2012). The accuracy of different biopsy strategies for the detection of clinically important prostate cancer: a computer simulation.. J Urol, 188 974-980. doi:10.1016/j.juro.2012.04.104

Mac Aodha, O., Campbell, N.D.F., Nair, A., Brostow, G.J. (2012). Patch Based Synthesis for Single Depth Image Super-Resolution.

Mac Aodha, O., Humayun, A., Pollefeys, M., Brostow, G.J. (2012). Learning a Confidence Measure for Optical Flow. IEEE Transactions on Pattern Analysis and Machine Intelligence, 35 (5), 1107-1120. doi:10.1109/TPAMI.2012.171

Mallik, C., Bandula, S., Rice, S., Atkinson, D., Taylor, S., Moon, J., Punwani, S. (2012). Optimisation of the bolus and infusion protocol for equilibrium magnetic resonance imaging.

Martin, J., McClelland, J., Thomas, C., Wildermuth, K., Landau, D., Ourselin, S., Hawkes, D. (2012). Motion modelling and motion compensated reconstruction of tumours in cone-beam computed tomography.

Mat Baki, M., Birchall, M., Menys, A., Beale, T., Atkinson, D., Stevens, N., ...Punwani, S. (2012). Quantitative measure of vocal fold motion — a feasibility study.

McClelland, J., Suh, Y., Ahmad, S., Hawkes, D. (2012). Study of Deformable Registration Based 4DCT Ventilation Imaging Methods.

Melbourne, A., Cahill, N., Tanner, C., Modat, M., Hawkes, D.J., Ourselin, S. (2012). Using fractional gradient information in non-rigid image registration: Application to breast MRI. MEDICAL IMAGING 2012: IMAGE PROCESSING, 8314 doi:10.1117/12.911173

Menys, A., Atkinson, D., Odille, F., Ahmed, A., Novelli, M., Rodriguez-Justo, M., ...Taylor, S. (2012). Quantified terminal ileal motility during MR enterography as a potential biomarker of Crohn’s disease activity – a preliminary study. European Radiology, 22 (11), 2494-2501. doi:10.1007/s00330-012-2514-2

Menys, A., Atkinson, D., Punwani, S., Proctor, I., Novelli, M., Rodriguez-Justo, M., ...Taylor, S. (2012). MRI-derived small bowel motility as a marker of disease activity in Crohn’s disease using a histopathological standard of reference.

Menys, A., Odille, F., Punwani, S., Novelli, M., Rodriguez-Justo, M., Halligan, S., ...Taylor, S. (2012). MRI derived small bowel motility as a marker of Crohn’s disease activity.

Mertzanidou, T., Hipwell, J., Cardoso, M.J., Zhang, X., Tanner, C., Ourselin, S., ...Hawkes, D. (2012). MRI to X-ray mammography registration using a volume-preserving affine transformation.. MEDICAL IMAGE ANALYSIS, 16 (5), 966-975. doi:10.1016/j.media.2012.03.001

Mertzanidou, T., Hipwell, J.H., Han, L., Taylor, Z.A., Huisman, H.J., Bick, U., ...Hawkes, D.J. (2012). Intensity-Based MRI to X-ray Mammography Registration with an Integrated Fast Biomechanical Transformation..

Newell, A.J., MORGAN, R.M., Bull, P.A., Griffin, L.D., Graham, G. (2012). Automated texture recognition of quartz sand grains for forensic applications.. Journal of Forensic Sciences,

Odille, F., Menys, A., Ahmed, A., Punwani, S., Taylor, S., Atkinson, D. (2012). Quantitative assessment of small bowel motility by nonrigid registration of dynamic MR images. Magnetic Resonance in Medicine, 68 (3), 783-793. doi:10.1002/mrm.23298

Pedemonte, S., Arridge, S., Hutton, B.F., Ourselin, S. (2012). Joint Estimation of the Activity and the Events of Interaction in SPECT Systems.

Pedemonte, S., Cardoso, M.J., Arridge, S.R., Hutton, B.F., Ourselin, S. (2012). Steady-State Model of the Radio-Pharmaceutical Uptake for MR-PET..

Perez-Juste Abascal, J.F., Aguirre, J., Chamorro-Servent, J., Schweiger, M., Arridge, S., Ripoll, J., ...Desco, M. (2012). Influence of absorption and scattering on the quantification of fluorescence diffuse optical tomography using normalized data. JOURNAL OF BIOMEDICAL OPTICS, 17 (3), doi:10.1117/1.JBO.17.3.036013

Protonotarios, E., Griffin, L. (2012). An objective measure of order for 2-D patterns of points in agreement with human perception.

Proverbio, A., Siow, B., Lythgoe, M., Gibson, A., Alexander, D. (2012). Multimodality investigation of microstructure: the combination of diffusion NMR and diffuse optical spectroscopy.

Punwani, S., Purpura, P., Dikaios, N., Fitzke, H., Bainbridge, A., Price, D., ...Mendes, R. (2012). Multi-scale analysis of apparent diffusion coefficient (ADC) predicts cervical nodal status in patients with head & neck squamous cell carcinoma.

Reichen, M., Macown, R.J., Jaccard, N., Super, A., Ruban, L., Griffin, L., ...Szita, N. (2012). Microfabricated modular scale-down device for regenerative medicine process development. 7 (12), doi:10.1371/journal.pone.0052246

Richardson, S., Siow, B., Batchelor, A., Lythgoe, M., Alexander, D. (2012). Development and Stability Testing of an MRI Compatible Isolated Tissue System..

Richardson, S., Siow, B., Batchelor, A.M., Lythgoe, M.F., Alexander, D.C. (2012). A viable isolated tissue system: A tool for detailed MR measurements and controlled perturbation in physiologically stable tissue. Magnetic Resonance Medicine, n/a. doi:10.1002/mrm.24410

Roth, H., Boone, D., Halligan, S., Hampshire, T., McClelland, J., Hu, M., ...Hawkes, D. (2012). External Clinical Validation of Prone and Supine CT Colonography Registration.

Roth, H., Mcclelland, J., Modat, M., Hampshire, T., Boone, D., hu, M., ...Hawkes, D. (2012). WE‐E‐213CD‐03: Inverse‐Consistent Symmetric Registration of Inner Colon Surfaces Derived from Prone and Supine CT Colonography.

Roth, H., McClelland, J., Modat, M., Hampshire, T., Boone, D., Hu, M., ...Hawkes, D. (2012). Inverse-Consistent Symmetric Registration of Inner Colon Surfaces Derived From Prone and Supine CT Colonography.

Roth, H.R., Hampshire, T.E., McClelland, J.R., Hu, M., Boone, D.J., Slabaugh, G.G., ...Hawkes, D.J. (2012). Inverse consistency error in the registration of prone and supine images in CT colonography.

Rowe, M.C., Zhang, H., Alexander, D.C. (2012). Utilising measures of fiber dispersion in white matter tractography.

Sardini, A., Stuckey, D.W., McGinty, J., Laine, R., Soloviev, V.Y., Arridge, S.R., ...Hajnal, J.V. (2012). In Vivo Investigation of Calpain Activity by Lifetime Imaging of Genetically Encoded FRET Sensors. BIOPHYSICAL JOURNAL, 102 (3), 159A. doi:10.1016/j.bpj.2011.11.866

Schneider, T., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2012). Mapping the axon diameter index in the corpus callosum is clinically feasible.

Shepherd, T., Prince, S.J.D., Alexander, D. (2012). Interactive Lesion Segmentation with Shape Priors from Off-line and On-line Learning. IEEE Trans. Medical Imaging, doi:10.1109/TMI.2012.2196285

Siow, B., Drobnjak, I., Chatterjee, A., Lythgoe, M.F., Alexander, D.C. (2012). Estimation of pore size in a microstructure phantom using the optimised gradient waveform diffusion weighted NMR sequence. Journal of Magnetic Resonance, 214 51-60.

Siow, B.M.C.W., Drobnjak, I., Ianus, A., Christie, I.N., Alexander, D.A. (2012). Pore Size Estimation with Oscillating Gradient Spin Echo (OGSE) Diffusion NMR.

Siow, B.M.C.W., Drobnjak, I., Ianus, A., Christie, I.N., Lythgoe, M.F., Alexander, D.C. (2012). Optimised oscillating gradient diffusion MRI for the estimation of axon radius in an ex-vivo rat brain.

Siow, B.M.C.W., Ianus, A., Drobnjak, I., Christie, I.N., Lythgoe, M.F., Alexander, D.C. (2012). Optimised oscillating gradient diffusion MRI for the estimation of axon radius in an ex vivo rat brain.

Soloviev, V.Y., Zacharakis, G., Spiliopoulos, G., Favicchio, R., Correia, T., Arridge, S.R., Ripoll, J. (2012). Tomographic imaging with polarized light. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 29 (6), 980-988. doi:10.1364/JOSAA.29.000980

Steeden, J.A., Atkinson, D., Jones, A., Muthurangu, V. (2012). High resolution slice-selective Fourier Velocity Encoding using spiral SENSE with velocity unwrap.

Steeden, J.A., Atkinson, D., Jones, A., Muthurangu, V. (2012). Velocity unwrap for high resolution slice-selective Fourier Velocity Encoding using spiral SENSE.

Steeden, J.A., Jones, A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). Velocity unwrap for high resolution slice-selective Fourier velocity encoding using spiral SENSE.

Steeden, J.A., Jones, A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2012). High Resolution Slice-Selective Fourier Velocity encoding in congenital heart disease using spiral SENSE with velocity unwrap. Magnetic Resonance in Medicine, 67 (6), 1538-1546. doi:10.1002/mrm.24293

Tariq, M., schneider, T., Alexander, D.C., Wheeler-Kingshot, C., Zhang, H. (2012). Scan-rescan reproducibility of neurite microstructure estimates using NODDI.

Tarvainen, T., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2012). Utilising approximation error modelling in linear reconstruction in diffuse optical tomography.

Tarvainen, T.M., Cox, B.T., Kaipio, J.P., Arridge, S.R. (2012). Reconstructing absorption and scattering distributions in quantitative photoacoustic tomography. Inverse Problems, 28 (8), doi:10.1088/0266-5611/28/8/084009

Thomas, B.A., Erlandsson, K., Reilhac, A., Bousse, A., Kazantsev, D., Pedemonte, S., ...Hutton, B.F. (2012). A Comparison of the Options for Brain Partial Volume Correction Using PET/MRI.

Thompson, S., Penney, G., Challacombe, B., Hawkes, D., Dasgupta, P. (2012). Design and Evaluation of Image Guidance Systems for RARP.

Thompson, S., Penney, G., Challacombe, B., Hawkes, D., Dasgupta, P. (2012). EVALUATION OF IMAGE GUIDANCE SYSTEMS FOR ROBOT ASSISTED RADICAL PROSTATECTOMY. JOURNAL OF ENDOUROLOGY, 26 A407.

Tremoulheac, B., Atkinson, D., Arridge, S.R. (2012). Motion and contrast enhancement separation model reconstruction from partial measurements in dynamic MRI.

Usman, M., Atkinson, D., Odille, F., Kolbitsch, C., Vaillant, G., Schaeffter, T., ...Prieto, C. (2012). Motion corrected compressed sensing for free breathing dynamic Cardiac MRI. Magnetic Resonance in Medicine, 70 (2), 504-516. doi:10.1002/mrm.24463

Usman, M., Kolbitsch, C., Vaillant, G., Atkinson, D., Schaeffter, T., Batchelor, P.G., Prieto, C. (2012). A frame work for non-rigid motion corrected compressed sensing for highly accelerated MRI.

Vunckx, K., Arridge, S.R., Bousse, A., Kazantsev, D., Pedemonte, S., Ourselin, S., Hutton, B.F. (2012). Unifying Global and Local Statistical Measures for Anatomy-Guided Emission Tomography Reconstruction. 2012 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE RECORD (NSS/MIC), 2161-2165.

Waechter-Stehle, I., Groth, A., Bruijns, T., Brina, O., Ruefenacht, D.A., Kulcsar, Z., ...Weese, J. (2012). Model-based blood flow quantification from DSA: quantitative evaluation on patient data and comparison with TCCD.

Wheeler-Kingshott, C.A.M., Ciccarelli, O., Schneider, T., Alexander, D.C., Cercignani, M. (2012). A new approach to structural integrity assessment based on axial and radial diffusivities. Functional Neurology, 27 (2), 85-90.

Yang, G., Hipwell, J.H., Hawkes, D.J., Arridge, S.R. (2012). A Nonlinear Least Squares Method for Solving the Joint Reconstruction and Registration Problem in Digital Breast Tomosynthesis.

Yang, G., Hipwell, J.H., Tanner, C., Hawkes, D.J., Arridge, S.R. (2012). Joint Registration and Limited-Angle Reconstruction of Digital Breast Tomosynthesis.

Zhang, H., Dyrby, T.B., Alexander, D.C. (2012). Axon diameter mapping in crossing fibers with diffusion MRI.

Zhang, H., Schneider, T., Wheeler-Kingshott, C.A., Alexander, D.C. (2012). NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage, 61 (4), 1000-1016. doi:10.1016/j.neuroimage.2012.03.072

Zhang, H., Schneider, T., Wheeler-Kingshott, C., Alexander, D.C. (2012). NODDI: a practical technique for in vivo neurite orientation dispersion and density imaging of the human brain.

Zhang, H., Schneider, T., wheeler-kingshott, C., Alexander, D.C. (2012). NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain.

2011

Abascal, J.F.P.-.J., Chamorro-Servent, J., Aguirre, J., Arridge, S., Correia, T., Ripoll, J., ...Desco, M. (2011). Fluorescence diffuse optical tomography using the split Bregman method. MEDICAL PHYSICS, 38 (11), 6275-6284. doi:10.1118/1.3656063

Abascal, J.-.F.P.J., Lionheart, W.R.B., Arridge, S.R., Schweiger, M., Atkinson, D., Holder, D.S. (2011). Electrical impedance tomography in anisotropic media with known eigenvectors. Inverse Problems, 27 (6), 065004-. doi:10.1088/0266-5611/27/6/065004

Abascal, J.P.J., Lionheart, W.R.B., Arridge, S.R., Schweiger, M., Atkinson, D., Holder, D.S. (2011). Electrical impedance tomography in anisotropic media with known eigenvectors. Inverse Problems, 27 (6), 065004-. doi:10.1088/0266-5611/27/6/065004

Ahmed, H.U., Hu, Y., Carter, T., Lecornet, E., Freeman, A., Hawkes, D.J., ...Emberton, M. (2011). Characterising Clinically Significant Prostate Cancer using Template Prostate Mapping Biopsy.. Journal of Urology, 186 (2), 458-464. doi:10.1016/j.juro.2011.03.147

Arridge, S.R. (2011). Methods in diffuse optical imaging. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 369 (1955), 4558-4576. doi:10.1098/rsta.2011.0311

Barratt, D.C., Hawkes, D.J. (2011). Image Registration and Fusion for Image-Guided Focal Ablation. In Ahmed, H.U., Arya, M., Carroll, P.R., Emberton, M. (Eds.), Focal Therapy in Prostate Cancer. (pp. 132-141). John Wiley & Sons.

Bassi, A., Ducros, N., D'andrea, C., Valentini, G., Arridge, S. (2011). Novel approaches based on structured light for fast Diffuse Optical Tomography.

Brostow, G.J., Hernandez, C., Vogiatzis, G., Stenger, B., Cipolla, R. (2011). Video Normals from Colored Lights. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 33 (10), 2104-2114. doi:10.1109/TPAMI.2011.37

Cade, S.C., Arridge, S., Evans, M.J., Hutton, B.F. (2011). Attenuation map estimation without transmission scanning using measured scatter data. 2011 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE (NSS/MIC), 2657-2663.

Clarke, A., Halley, F., Newell, A.J., Griffin, L., Chantler, M. (2011). Perceptual Similarity: A Texture Challenge.

Clarkson, M.J., Modat, M., Han, L., Ourselin, S., Hawkes, D.J., Alexander, D.C., ...Barrat, D. (2011). The UCL Centre for Medical Image Computing (CMIC): An integrated suite of open source software tools to support imaging research in Neurosciences, Oncology and Cardiovascular Sciences.

Cleary, J.O., Modat, M., Norris, F.C., Price, A.N., Jayakody, S.A., Martinez-Barbera, J.P., ...Scambler, P.J. (2011). Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping.. NEUROIMAGE, 54 (2), 769-778. doi:10.1016/j.neuroimage.2010.07.039

Correia, T., Aguirre, J., Sisniega, A., Chamorro-Servent, J., Abascal, J., Vaquero, J.J., ...Arridge, S. (2011). Split operator method for fluorescence diffuse optical tomography using anisotropic diffusion regularisation with prior anatomical information. BIOMEDICAL OPTICS EXPRESS, 2 (9), 2632-2648. doi:10.1364/BOE.2.002632

Cox, B., Tarvainen, T., Arridge, S. (2011). Multiple Illumination Quantitative Photoacoustic Tomography using Transport and Diffusion Models.

Daga, P., Winston, G., Modat, M., Cardoso, M.J., Stretton, J., Symms, M., ...Ourselin, S. (2011). Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients.

Daga, P., Winston, G., Modat, M., Cardoso, M., White, M., Mancini, L., ...Yousry, T. (2011). Improved neuronavigation through integration of intraoperative anatomical and diffusion images in an interventional MRI suite.

Daga, P., Winston, G., Modat, M., White, M., Mancini, L., Cardoso, M., ...Ourselin, S. (2011). Accurate localisation of optic radiation during neurosurgery in an interventional MRI Suite. IEEE Trans Med Imaging, doi:10.1109/TMI.2011.2179668

Deligianni, F., Robinson, E., Sharp, D., Edwards, A.D., Rueckert, D., Alexander, D.C. (2011). Exploiting hierarchy in structural brain networks. 2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 871-874.

Drobnjak, I., Alexander, D.C. (2011). Optimising time-varying gradient orientation for microstructure sensitivity in diffusion-weighted MR.. JOURNAL OF MAGNETIC RESONANCE, 212 (2), 344-354. doi:10.1016/j.jmr.2011.07.017

Ducros, N., Bassi, A., Valentini, G., Schweiger, M., Arridge, S., D'Andrea, C. (2011). Fluorescence diffuse optical tomography with multiple view structured illumination.

Ducros, N., Bassi, A., Valentini, G., Schweiger, M., Arridge, S., D'Andrea, C. (2011). Fluorescence diffuse optical tomography with multiple view structured illumination.

Ducros, N., Bassi, A., Valentini, G., Schweiger, M., Arridge, S., D'Andrea, C. (2011). Multiple-view fluorescence optical tomography reconstruction using compression of experimental data. OPTICS LETTERS, 36 (8), 1377-1379. doi:10.1364/OL.36.001377

Dyrby, T.B., Baaré, W.F.C., Alexander, D.C., Jelsing, J., Garde, E., Søgaard, L.V. (2011). An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets.. HUMAN BRAIN MAPPING, 32 (4), 544-563. doi:10.1002/hbm.21043

Elisee, J., Bonnet, M., Arridge, S. (2011). Accelerated boundary element method for diffuse optical imaging. OPTICS LETTERS, 36 (20), 4101-4103. doi:10.1364/OL.36.004101

Elisee, J., Gibson, A., Arridge, S. (2011). Diffuse optical cortical mapping using the boundary element method. BIOMEDICAL OPTICS EXPRESS, 2 (3), 568-578. doi:10.1364/BOE.2.000568

Eshaghi, A., Patel, S.N., Sarabia, A., Higgins, R.R., Savchenko, A., Stojios, P.J., ...Low, D.E. (2011). Multidrug-Resistant Pandemic (H1N1) 2009 Infection in Immunocompetent Child. EMERGING INFECTIOUS DISEASES, 17 (8), 1472-1474. doi:10.3201/eid1708.102004

Fonteijn, H.M., Clarkson, M.J., Modat, M., Barnes, J., Lehmann, M., Ourselin, S., ...Alexander, D.C. (2011). An event-based disease progression model and its application to familial Alzheimer's disease.

Griffin, L., Wahab, M. (2011). Similar things look similar.

Hampshire, T., Roth, H., Hu, M., Boone, D., Slabaugh, G., Punwani, S., ...Hawkes, D. (2011). Automatic prone to supine haustral fold matching in CT colonography using a Markov random field model.. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, 508-515.

Hampshire, T., Roth, H., Hu, M., Boone, D., Slabaugh, G., Punwani, S., ...Hawkes, D. (2011). Automatic prone to supine haustral fold matching in CT colonography using a Markov random field model. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 6891 LNCS (PART 1), 508-515. doi:10.1007/978-3-642-23623-5_64

Hamy, V., Atkinson, D., Walker-Samuel, S., Punwani, S. (2011). Comparison of least squares and maximum likelihood for apparent diffusion coefficient estimation in prostate diffusion-weighted MRI (DW-MRI).

Hamy, V., Walker-Samuel, S., Punwani, S., Atkinson, D. (2011). Comparison of least squares and maximum likelihood for apparent diffusion coefficient estimation in prostate DW-MRI.

Han, L., HIPWELL, J., Mertzanidou, T., Carter, T., Modat, M., Ourselin, S., Hawkes, D. (2011). A HYBRID FEM-BASED METHOD FOR ALIGNING PRONE AND SUPINE IMAGES FOR IMAGE GUIDED BREAST SURGERY.

Humayun, A., Mac Aodha, O., Brostow, G.J. (2011). Learning to Find Occlusion Regions.

Hu, Y., Carter, T.J., Ahmed, H.U., Emberton, M., Allen, C., Hawkes, D.J., Barratt, D.C. (2011). Modelling prostate motion for data fusion during image-guided interventions.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 30 (11), 1887-1900. doi:10.1109/TMI.2011.2158235

Jack, C.R., Barkhof, F., Bernstein, M.A., Cantillon, M., Cole, P.E., DeCarli, C., ...Frisoni, G.B. (2011). Steps to standardization and validation of hippocampal volumetry as a biomarker in clinical trials and diagnostic criterion for Alzheimer's disease. ALZHEIMERS & DEMENTIA, 7 (4), 474-485. doi:10.1016/j.jalz.2011.04.007

Jafar, Y., HIPWELL, J., Tanner, C., Melbourne, A., Hawkes, D. (2011). DISCRETISATION OF 3D DEFORMATION FIELDS: IMPLICATIONS FOR ESTABLISHING CORRESPONDENCE BETWEEN 2D X-RAY MAMMOGRAPHIC PROJECTIONS.

Jafar, Y., Hipwell, J., Tanner, C., Melbourne, A., Hawkes, D.J. (2011). Discretisation of 3D deformation fields: Implications for establishing correspondence between 2D X-ray mammographic projections. Proceedings - International Symposium on Biomedical Imaging, 1998-2001. doi:10.1109/ISBI.2011.5872803

Johnsen, S.F., Clark, C., Atkinson, D. (2011). Registration of low-SNR high-resolution diffusion-weighted images.

Kazantsev, D., Bousse, A., Pedemonte, S., Arridge, S.R., Hutton, B.F., Ourselin, S. (2011). Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction. 2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 1158-1161.

Kolehmainen, V., Tarvainen, T., Arridge, S.R., Kaipio, J.P. (2011). Marginalization of uninteresting parameters in inverse problems – application to diffuse opticaltomography. International Journal for Uncertainty Quantification, 1 (1), 1-17.

Kowalik, G., Steeden, J.A., ATKINSON, D., Muthurangu, V. (2011). A networked GPU reconstructor within the clinical workflow for rapid fat quantification..

Kowalik, G., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2011). A heterogeneous image reconstruction system for clinical Magnetic Resonance.

Kunz, N., Zhang, H., O'brien, K.R., Assaf, Y., Alexander, D.C., Lazeyras, F., Hüppi1, P.S. (2011). Probing microstructural information using the CHARMED model in the non-myelinated human newborn brain at 3T.

Lecornet, E., Ahmed, H.U., Hu, Y., Moore, C.M., Nevoux, P., Barratt, D., ...Emberton, M. (2011). PERFORMANCE CHARACTERISTICS OF DIFFERENT TRANSRECTAL (TRB) AND TRANSPERINEAL MAPPING PROSTATE BIOPSY (TPB) STRATEGIES: A SIMULATION ON 96 CYSTOPROSTATECTOMY SPECIMENS (CPTS).

Martelli, F., Del Bianco, S., Zaccanti, G., Liemert, A., Kienle, A., Schweiger, M., ...Wabnitz, H. (2011). Comparison of independent forward solvers for photon migration through layered media.

Martin, J., MCCLELLAND, J.R., Hawkes, D.J. (2011). Determination of tumour-centre motion during a cone-beam CT acquisition - a feasibility study.

McClelland, J.R., Hughes, S., Modat, M., Qureshi, A., Ahmad, S., Landau, D.B., ...Hawkes, D.J. (2011). Inter-fraction variations in respiratory motion models.. PHYSICS IN MEDICINE AND BIOLOGY, 56 (1), 251-272. doi:10.1088/0031-9155/56/1/015

MCCLELLAND, J.R., Martin, J., Hawkes, D.J. (2011). Lung tumour tracking and motion compensated reconstruction in cone beam CT.

McGinty, J., Stuckey, D.W., Soloviev, V.Y., Laine, R., Wylezinska-Arridge, M., Wells, D.J., ...Sardini, A. (2011). In vivo fluorescence lifetime tomography of a FRET probe expressed in mouse. BIOMEDICAL OPTICS EXPRESS, 2 (7), 1907-1917. doi:10.1364/BOE.2.001907

Melbourne, A., Cahill, N.D., Tanner, C., Hawkes, D.J., I.E.E.E. (2011). IMAGE REGISTRATION USING AN EXTENDABLE QUADRATIC REGULARISER.

Melbourne, A., Hipwell, J., Modat, M., Mertzanidou, T., Huisman, H., Ourselin, S., Hawkes, D.J. (2011). The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI.. PHYSICS IN MEDICINE AND BIOLOGY, 56 (24), 7693-7708. doi:10.1088/0031-9155/56/24/001

Menys, A., Ahmed, A., Punwani, S., Odille, F., Steward, M., ATKINSON, D., ...Taylor, S.A. (2011). Quantified small bowel motility during MR enterography in Crohn’s disease as a marker of inflammatory activity..

Menys, A., Ahmed, A., Punwani, S., Odille, F., Steward, M., ATKINSON, D., ...Taylor, S.A. (2011). Quantified small bowel motility during MR enterography in Crohn’s disease as a marker of inflammatory activity..

Modat, M., Ridgway, G.R., Daga, P., Cardoso, M.J., Hawkes, D.J., Ashburner, J., Ourselin, S. (2011). Log-Euclidean free-form deformation.

Mohan, P.S., Soloviev, V.Y., Arridge, S.R. (2011). Discontinuous Galerkin method for the forward modelling in optical diffusion tomography. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, 85 (5), 562-574. doi:10.1002/nme.2974

Moore, C.M. (2011). Performances of template prostate mapping (tpm) versus transrectal ultrasound guided (TRUS) biopsies: an original computer simulation on cystoprostectomy specimens..

MORGAN, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2011). A framework for modelling the regional variation of white matter microstructure.

MORGAN, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2011). Regional variation models of white matter microstructure.

Morgan, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2011). A Bayesian framework for modelling the regional variation of white matter microstructure.

Newell, A.J., Griffin, L.D. (2011). Multiscale histogram of oriented gradient descriptors for robust character recognition.

Newell, A.J., Griffin, L.D. (2011). Natural image character recognition using oriented basic image features.

Odille, F., Menys, A., Ahmed, A., Punwani, S., Taylor, S., ATKINSON, D. (2011). Quantitative assessment of small bowel motility by nonrigid registration of dynamic MR images.

O'Reilly, M.T., Roth, A., Griffin, L.D., Häusser, M. (2011). A circle-based method for detection of neural fibre cross-sections in classically stained 2D electron micrographs.

Panagiotaki, E., Schneider, T., Siow, B., Lythgoe, M.F., Hall, M.G., Alexander, D.C. (2011). A hierarchy of analytic models for the diffusion MRI signal in brain white matter.

Pedemonte, S., Bousse, A., Hutton, B.F., Arridge, S., Ourselin, S. (2011). Probabilistic graphical model of SPECT/MRI. MACHINE LEARNING IN MEDICAL IMAGING, 7009 167-+.

Pinto Pereira, S.M., McCormack, V.A., Hipwell, J.H., Record, C., Wilkinson, L.S., Moss, S.M., ...dos-Santos-Silva, I. (2011). Localized fibroglandular tissue as a predictor of future tumor location within the breast.. Cancer Epidemiol Biomarkers Prev, 20 (8), 1718-1725. doi:10.1158/1055-9965.EPI-11-0423

Reynolds, M., Doboš, J., Peel, L., Weyrich, T., Brostow, G. (2011). Capturing Time-of-Flight Data with Confidence.

Reynolds, M., Dobos, J., Peel, L., Weyrich, T., Brostow, G.J. (2011). Capturing Time-of-Flight Data with Confidence.

Rijkhorst, E.-.J., Rivens, I., Haar, G.T., Hawkes, D., Barratt, D. (2011). Effects of respiratory liver motion on heating for gated and model-based motion-compensated high-intensity focused ultrasound ablation.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION, MICCAI 2011, PT I, 6891 605-+.

Rijkhorst, E.J., Rivens, I., Ter Haar, G., Hawkes, D., Barratt, D. (2011). Effects of respiratory liver motion on heating for gated and model-based motion-compensated high-intensity focused ultrasound ablation.

Roth, H.R., McClelland, J.R., Boone, D.J., Modat, M., Cardoso, M.J., Hampshire, T.E., ...Slabaugh, G.G. (2011). Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography. Medical Physics, 38 (6), 3077-3089. doi:10.1118/1.3577603

Schneider, T., Thomas, D.L., Kachramanoglou, C., Ciccarelli, O., Alexander, D.C., Wheeler-Kingshott, C. (2011). Fuzzy partial volume correction of spinal cord DTI parameters.

Sherbondy, A.J., Dyrby, T.B., Rowe, M.C., Ptito, M., Wandell, B., Alexander, D.C. (2011). Microstructure Tracking (Microtrack): an algorithm for estimating a multiscale hierarchical white matter model from diffusion-weighted MRI..

SIOW, B., Cleary, J.O., Greene, N.D., Daga, P., Modat, M., Ordidge, R., ...Lythgoe, M.F. (2011). Mouse Embryo Phenotyping with Contrast-enhanced micro-Diffusion Tensor Imaging.

SIOW, B., Drobnjak, I., Lythgoe, M.F., Alexander, D.C. (2011). Optimised Gradient Waveform Spin-Echo sequence for Diffusion Weighted MR in a Microstructure Phantom.

Soloviev, V.Y., Arridge, S.R. (2011). Fluorescence lifetime optical tomography in weakly scattering media in the presence of highly scattering inclusions. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 28 (7), 1513-1523. doi:10.1364/JOSAA.28.001513

Soloviev, V.Y., Arridge, S.R. (2011). Optical projection tomography for light scattering media.

Soloviev, V.Y., Arridge, S.R. (2011). Optical Tomography in weakly scattering media in the presence of highly scattering inclusions. BIOMEDICAL OPTICS EXPRESS, 2 (3), 440-451. doi:10.1364/BOE.2.000440

Soloviev, V.Y., Bassi, A., Fieramonti, L., Valentini, G., D'Andrea, C., Arridge, S.R. (2011). Angularly selective mesoscopic tomography. PHYSICAL REVIEW E, 84 (5), doi:10.1103/PhysRevE.84.051915

Soloviev, V.Y., McGinty, J., Stuckey, D.W., Laine, R., Wylezinska-Arridge, M., Wells, D.J., ...Arridge, S.R. (2011). Forster resonance energy transfer imaging in vivo with approximated radiative transfer equation. APPLIED OPTICS, 50 (36), 6583-6590. doi:10.1364/AO.50.006583

Somayajula, S., Panagiotou, C., Rangarajan, A., Li, Q., Arridge, S.R., Leahy, R.M. (2011). PET Image Reconstruction Using Information Theoretic Anatomical Priors. IEEE TRANSACTIONS ON MEDICAL IMAGING, 30 (3), 537-549. doi:10.1109/TMI.2010.2076827

Steeden, J.A., ATKINSON, D., Hansen, M.S., Taylor, A.M., Muthurangu, V. (2011). Rapid flow assessment of congenital heart disease using high spatio-temporal gated spiral phase contrast MR. Radiology, 260 (1), 79-87. doi:10.1148/radiol.11101844

Steeden, J.A., ATKINSON, D., Taylor, A.M., Muthurangu, V. (2011). Rapid flow assessment of congenital heart disease using high spatio-temporal gated spiral phase-contrast..

Taneja, A., Ballan, L., Puwein, J., Brostow, G.J., Pollefeys, M. (2011). 3D Reconstruction and Video-Based Rendering of Casually Captured Videos.

Tanner, C., White, M., Guarino, S., Hall-Craggs, M.A., Douek, M., Hawkes, D.J. (2011). Large breast compressions: Observations and evaluation of simulations. MEDICAL PHYSICS, 38 (2), 682-690. doi:10.1118/1.3525837

Tarvainen, T., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2011). Image reconstruction in diffuse optical tomography using the coupled radiative transport-diffusion model. JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER, 112 (16), 2600-2608. doi:10.1016/j.jqsrt.2011.07.008

Tarvainen, T.M., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2011). Image reconstruction in diffuse optical tomography using the coupled radiative transport – diffusion model. Journal of Quantitative Spectroscopy and Radiative Transfer, 112 2600-2608. doi:10.1016/j.jqsrt.2011.07.008

Thompson, S.A., Hu, M., Johnsen, S., Gurusamy, K., Davidson, B., Hawkes, D. (2011). Towards Image Guided Laparoscopic Liver Surgery, Defining the System Requirement.

Tremoulheac, B., Batchelor, P.G., Menys, A., Atkinson, D. (2011). Decomposition of dynamic MR images with low-rank and sparse matrix separation.

Usman, M., Prieto, C., Odille, F., ATKINSON, D., Schaeffter, T., Batchelor, P.G. (2011). A computationally efficient OMP based compressed sensing reconstruction for dynamic MRI. Physics in Medicine and Biology, 56 (7), N99-N114. doi:10.1088/0031-9155/56/7/N02

Yang, G., Hipwell, J.H., Hawkes, D.J., Arridge, S.R. (2011). Unconstrained Simultaneous Scheme to Fully Couple Reconstruction and Registration for Digital Breast Tomosynthesis: A Feasible Study.

Yang, G., Hipwell, J.H., Tanner, C., Hawkes, D.J., Arridge, S.R. (2011). Alternating Reconstruction and Registration for Digital Breast Tomosynthesis.

ZHANG, H., Barazany, D., Assaf, Y., Lundell, H.M., Alexander, D.C., Dyrby, T. (2011). A comparative study of axon diameter imaging techniques using diffusion MRI.

ZHANG, H., Hubbard, P.L., Parker, G.J.M., Alexander, D.C. (2011). Axon diameter mapping in the presence of orientation dispersion using diffusion MRI.

Zhuang, X., Arridge, S., Hawkes, D.J., Ourselin, S. (2011). A nonrigid registration framework using spatially encoded mutual information and free-form deformations.. IEEE Trans Med Imaging, 30 (10), 1819-1828. doi:10.1109/TMI.2011.2150240

Zhuang, X., Shi, W., Duckett, S.G., Wang, H., Razavi, R., Hawkes, D.J., ...Ourselin, S. (2011). A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions..

2010

Alexander, D.C., Hubbard, P.L., Hall, M.G., Moore, E.A., Ptito, M., Parker, G.J.M., Dyrby, T.B. (2010). Orientationally invariant indices of axon diameter and density from diffusion MRI.. NEUROIMAGE, 52 (4), 1374-1389. doi:10.1016/j.neuroimage.2010.05.043

Alexander, D.C., Seunarine, K.K. (2010). Mathematics of Crossing Fibres. In Jones, D.K. (Ed.), Diffusion MRI. Oxford University Press, USA.

Allain, B., Hu, M., Lovat, L.B., Cook, R.J., Vercauteren, T., Ourselin, S., Hawkes, D.J. (2010). A system for biopsy site re-targeting with uncertainty in gastroenterology and oropharyngeal examinations..

Amati, C., Brostow, G.J. (2010). Modeling 2.5D Plants from Ink Paintings..

Ballan, L., Brostow, G.J., Puwein, J., Pollefeys, M. (2010). Unstructured Video-Based Rendering: Interactive Exploration of Casually Captured Videos. ACM TRANSACTIONS ON GRAPHICS, 29 (4), doi:10.1145/1778765.1778824

Bousse, A., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., Arridge, S., Hutton, B.F. (2010). Weighted MRI-Based bowsher priors for SPECT brain image reconstruction. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3519-3522.

Bousse, A., Fuin, N., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., ...Hutton, B.F. (2010). Point spread function optimization in SPECT. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 2061-2065.

Cade, S., Bousse, A., Arridge, S., Evans, M., Hutton, B. (2010). Estimating an attenuation map from measured scatter for 180 degrees cardiac SPECT.

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2010). ACCOUNTING FOR CHANGING OVERLAP IN VARIATIONAL IMAGE REGISTRATION.

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2010). Extending the Quadratic Taxonomy of Regularizers for Nonparametric Registration.

Chen, B., Siow, B., Carmichael, D., Odille, F., Ordidge, R., Todd-Pokropek, A. (2010). Characterization of trabecular orientation in chicken femur by multi-directional SPENT (Sub-Pixel Enhancement of Non-Uniform Tissue).

Crosier, M., Griffin, L.D. (2010). Using Basic Image Features for Texture Classification. INTERNATIONAL JOURNAL OF COMPUTER VISION, 88 (3), 447-460. doi:10.1007/s11263-009-0315-0

D'Andrea, C., Ducros, N., Bassi, A., Arridge, S., Valentini, G. (2010). Fast 3D optical reconstruction in turbid media using spatially modulated light. BIOMEDICAL OPTICS EXPRESS, 1 (2), 471-481. doi:10.1364/BOE.1.000471

Drobnjak, I., Siow, B., Alexander, D. (2010). Optimizing gradient waveforms for microstructure sensitivity in diffusion-weighted MR. Journal of Magnetic Resonance,

Ducros, N., D'andrea, C., Valentini, G., Rudge, T., Arridge, S., Bassi, A. (2010). Full-wavelet approach for fluorescence diffuse optical tomography with structured illumination. OPTICS LETTERS, 35 (21), 3676-3678. doi:10.1364/OL.35.003676

Dyrby, T.B., Hubbard, P.L., Ptito, M., Hall, M.G., Alexander, D.C. (2010). Dependence of Axon Diameter Index on Maximum Gradient Strength.

Elisee, J.P., Gibson, A., Arridge, S. (2010). Combination of boundary element method and finite element method in diffuse optical tomography. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 57 (11), 2737-2745. doi:10.1109/TBME.2010.2055868

Fuin, N., Bousse, A., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B. (2010). Collimator Design in SPECT, an Optimisation Tool. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3149-3154.

Griffin, L.D., Lillholm, M. (2010). Symmetry Sensitivities of Derivative-of-Gaussian Filters. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 32 (6), 1072-1083. doi:10.1109/TPAMI.2009.91

Han, L., Hipwell, J.H., Taylor, Z.A., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method..

Hawkes, D., McClelland, J., Modat, M., Roth, H., Ourselin, S. (2010). NON-RIGID IMAGE REGISTRATION - HOW DOES IT WORK?.

Hill, D. (2010). Neuroimaging to assess safety and efficacy of AD therapies. EXPERT OPINION ON INVESTIGATIONAL DRUGS, 19 (1), 23-26. doi:10.1517/13543780903381320

Hu, M., Hawkes, D.J., Penney, G.P., Rueckert, D., Edwards, P.J., Bello, F., ...Casula, R. (2010). A ROBUST MOSAICING METHOD FOR ROBOTIC ASSISTED MINIMALLY INVASIVE SURGERY.

Hu, M., Penney, G., Rueckert, D., Edwards, P., Bello, F., Figl, M., ...Miao, Z. (2010). A Robust Mosaicing Method with Super-Resolution for Optical Medical Images.

Hu, M.X. (2010). Non-rigid reconstruction of the beating heart surface for minimally invasive cardiac surgery.

Hu, Y., Arumainayagam, N., Ahmed, H.U., Freeman, A., Hawkes, D., Emberton, M., Barratt, D. (2010). COMPARISON BETWEEN TRANSPERINEAL AND TRANSRECTAL BIOPSY FOR THE DETECTION OF PROSTATE CANCER TO GUIDE FOCAL THERAPY.

Hu, Y., Rijkhorst, E.-.J., Manber, R., Hawkes, D.J., Barratt, D.C. (2010). Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift..

Hu, Y., van den Boom, R., Carter, T., Taylor, Z., Hawkes, D., Ahmed, H.U., ...Barratt, D. (2010). A comparison of the accuracy of statistical models of prostate motion trained using data from biomechanical simulations.. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 103 (2-3), 262-272. doi:10.1016/j.pbiomolbio.2010.09.009

Jafar, Y.M., Hipwell, J.H., Tanner, C., Hawkes, D.J. (2010). Detection of Stable Mammographic Features under Compression using Simulated Mammograms.

Kazantsev, D., Pedemonte, S., Bousse, A., Panagiotou, C., Arridge, S.R., Hutton, B.F., Ourselin, S. (2010). ET Bayesian reconstruction using automatic bandwidth selection for joint entropy optimization. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3301-3307.

Kezele, I., Alexander, D.C., Batchelor, P.G., Mangin, J.-.F., Le Bihan, D., Poupon, C. (2010). Measuring Microstructural Features Related to Neuronal Activation Using Diffusion MRI and Three-Compartment Diffusion Models: A Feasibility Study.

Kezele, I., Batchelor, P.G., Poupon, C., Mangin, J.-.F., Le Bihan, D., Alexander, D.C. (2010). Feasibility of Measuring Microstructural Features of Systems with Intermediate Exchange and Sub-Cellular Compartmentalization Using Diffusion MRI.

Kleinnijenhuis, M., Barth, M., Alexander, D.C., Van Cappellen Van Walsum, A.-.M., Norris, D.G. (2010). SWI-Informed Diffusion Tensor Tractography.

Kumar, P., Thompson, S.A., Elhage, O., Challacombe, B.J., Penney, G., Hawkes, D. (2010). CLINICAL ASSESSMENT OF MRI GUIDED ROBOTIC RADICAL PROSTATECTOMY. JOURNAL OF ENDOUROLOGY, 24 A84.

Mac Aodha, O., Brostow, G.J., Pollefeys, M. (2010). Segmenting video into classes of algorithm-suitability..

Melbourne, A., Hawkes, D.J., Atkinson, D. (2010). Data driven groupwise registration of diffusion weighted images.

Melbourne, A., Hawkes, D.J., Atkinson, D. (2010). Data driven groupwise registration of diffusion weighted images..

Melbourne, A., Hipwell, J.H., Hawkes, D.J. (2010). The Effect of Motion Correction on Pharmacokinetic Parameter Estimation..

Melbourne, A., Ridgway, G., Hawkes, D.J. (2010). Image Similarity Metrics in Image Registration.

Mertzanidou, T., Hipwell, J.H., Cardoso, M.J., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification..

Mertzanidou, T., Hipwell, J.H., Tanner, C., Hawkes, D.J. (2010). An intensity-based approach to X-ray mammography - MRI registration.

Modat, M., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Nonrigid registration with differential bias correction using normalised mutual information.

Modat, M., Ridgway, G.R., Taylor, Z.A., Lehmann, M., Barnes, J., Hawkes, D.J., ...Ourselin, S. (2010). Fast free-form deformation using graphics processing units.. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 98 (3), 278-284. doi:10.1016/j.cmpb.2009.09.002

Modat, M., Taylor, Z., Ridgway, G., Barnes, J., Wild, E., Hawkes, D.J., ...Ourselin, S. (2010). Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington’s Disease Data.

Modat, M., Vercauteren, T., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images.

Morgan, G.L., Newbould, R.D., Whitcher, B., Alexander, D.C. (2010). Polynomial models of the spatial variation of axon radius in white matter.

Morgan, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2010). A spatial variation model of white matter microstructure.

Newell, A.J., Griffin, L.D., Morgan, R.M., Bull, P.A. (2010). Texture-based estimation of physical characteristics of sand grains.

Odille, F., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). A parallel computing framework for motion-compensated reconstruction based on the motion point-spread function.

Odille, F., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). On the accuracy of nonrigid motion correction.

Odille, F., Steeden, J.A., Muthurangu, V., Atkinson, D. (2010). Automatic segmentation propagation of the aorta in real-time phase contrast MRI using nonrigid Registration. Journal of Magnetic Resonance Imaging, 33 (1), 232-238. doi:10.1002/jmri.22402

Odille, F., Steeden, J., Muthurangu, V., Atkinson, D. (2010). Nonrigid registration based segmentation for the analysis of real-time cardiac flow images.

Odille, F., Uribe, S., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). Model-Based Reconstruction for Cardiac Cine MRI Without ECG or Breath Holding. Magnetic Resonance in Medicine, 63 (5), 1247-1257. doi:10.1002/mrm.22312

Panagiotaki, E., Hall, M.G., Siow, B., Lythgoe, M.F., Alexander, D.C. (2010). Three-dimensional models of tissue microstructure for simulating high-precision diffusion MRI data.

Pedemonte, S., Bousse, A., Erlandsson, K., Modat, M., Arridge, S., Hutton, B.F., Ourselin, S. (2010). GPU accelerated rotation-based emission tomography reconstruction. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 2657-2661.

Pedemonte, S., Cardoso, M.J., Bousse, A., Panagiotou, C., Kazantsev, D., Arridge, S., ...Ourselin, S. (2010). Class Conditional Entropic Prior for MRI Enhanced SPECT Reconstruction.

Pereira, S.M.P., Hipwell, J.H., McCormack, V.A., Tanner, C., Moss, S.M., Wilkinson, L.S., ...Kliger, C.J. (2010). Automated registration of diagnostic to prediagnostic x-ray mammograms: Evaluation and comparison to radiologists' accuracy. MED PHYS, 37 (9), 4530-4539. doi:10.1118/1.3457470

Pinto Pereira, S., McCormack, V., Hipwell, J., Record, C., Wilkinson, L., Moss, S., ...Silva, I. (2010). Do breast cancers arise in areas of the breast that pre-diagnostically had high mammographic density?.

Pinto Pereira, S.M., Hipwell, J.H., McCormack, V.A., Tanner, C., Moss, S.M., Wilkinson, L.S., ...Kliger, C.J. (2010). Automated registration of diagnostic to prediagnostic x-ray mammograms: Evaluation and comparison to radiologists' accuracy.. Medical physics, 37 (9), 4530-4539. doi:10.1118/1.3457470

Prevost, R., Buckley, D.L., Alexander, D.C. (2010). Optimization of the DCE-CT protocol using active imaging.

Prieto, C., Knowles, B.R., Usman, M., Batchelor, P.G., Odille, F., Atkinson, D., Schaeffter, T. (2010). Autocalibrated approach for the combination of compressed sensing and SENSE.

Prieto, C., Uribe, S., Razavi, R., Atkinson, D., Schaeffter, T. (2010). 3D Undersampled Golden-Radial Phase Encoding for DCE-MRA using inherently Regularized Iterative SENSE. Magnetic Resonance in Medicine, 64 (2), 514-526. doi:10.1002/mrm.22446

Rijkhorst, E.-.J., Heanes, D., Odille, F., Hawkes, D.J., Barratt, D.C. (2010). Simulating Dynamic Ultrasound Using MR-derived Motion Models to Assess Respiratory Synchronisation for Image-Guided Liver Interventions..

Roth, H., McClelland, J., Boone, D., Hu, M., Ourselin, S., Slabaugh, G., ...Medicsight, P.L.C. (2010). Conformal Mapping of the Inner Colon Surface to a Cylinder for the Application of Prone to Supine Registration.

Roth, H., McClelland, J., Modat, M., Boone, D., Hu, M., Ourselin, S., ...Hawkes, D. (2010). Establishing spatial correspondence between the inner colon surfaces from prone and supine CT colonography..

Rudge, T.J., Soloviev, V., Arridge, S.R. (2010). Fast image reconstruction in fluoresence optical tomography using data compression. Optics Letters, 35 (5), 763-766. doi:10.1364/OL.35.000763

Rueckert, D., Hawkes, D., Gerig, G., Yang, G.-.Z. (2010). Special Issue on the 12th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2009. MEDICAL IMAGE ANALYSIS, 14 (5), 631-632. doi:10.1016/j.media.2010.06.008

Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2010). Optimized diffusion MRI protocols for estimating axon diameter with known fibre orientation.

Schneider, T., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2010). In-vivo estimates of axonal characteristics using optimized diffusion MRI protocols for single fibre orientation..

Schweiger, M., Dorn, O., Zacharopoulos, A., Nissila, I., Arridge, S.R. (2010). 3D level set reconstruction of model and experimental data in Diffuse Optical Tomography. Optics Express, 18 (1), 150-164. doi:10.1364/OE.18.000150

Sherbondy, A.J., Rowe, M.C., Alexander, D.C. (2010). MicroTrack: An algorithm for concurrent projectome and microstructure estimation.

Sherbondy, A.J., Rowe, M.C., Alexander, D.C. (2010). MicroTrack: an algorithm for concurrent projectome and microstructure estimation.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2010, PT I, 6361 183-+.

SIOW, B., Carmichael, D.W., Riegler, J., Alexander, D.A., Lythgoe, M.F., Ordidge, R. (2010). Detection of Human Mononuclear Cells Labelled with Micron-Sized Iron Oxide Particles Using the Sub-Pixel Enhancement of Nonuniform Tissue (SPENT) Sequence.

Soloviev, V.Y., D'Andrea, C., Mohan, P.S., Valentini, G., Cubeddu, R., Arridge, S.R. (2010). Fluorescence lifetime optical tomography with Discontinuous Galerkin discretisation scheme. BIOMEDICAL OPTICS EXPRESS, 1 (3), 998-1013. doi:10.1364/BOE.1.000998

Soloviev, V.Y., McGinty, J., Tahir, K.B., Laine, R., Stuckey, D.W., Mohan, P.S., ...Arridge, S.R. (2010). Tomographic imaging of flourescence resonance energy transfer in highly light scattering media.

Soloviev, V.Y., McGinty, J., Tahir, K.B., Laine, R., Stuckey, D.W., Mohan, P.S., ...Arridge, S.R. (2010). Tomographic imaging of Fluorescence Resonance Energy Transfer in highly light scattering media.

Sorensen, T.S., Prieto, C., Atkinson, D., Hansen, M.S., Schaeffter, T. (2010). GPU accelerated iterative SENSE reconstruction of radial phase encoded whole-heart MRI.

Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Assessing the hemodynamic response to exercise - A novel MR approach.

Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Assessing vascular response to exercise using a combination of real-time spiral phase contrast MR and noninvasive blood pressure measurements.. JOURNAL OF MAGNETIC RESONANCE IMAGING, 31 (4), 997-1003. doi:10.1002/jmri.22105

Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Novel hybrid real-time phase-contrast sequence.

Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Split-acquisition real-time CINE phase-contrast MR flow measurements. Magnetic Resonance in Medicine, 64 (6), 1664-1670. doi:10.1002/mrm.22615

Sutcliffe, A.G., Akindolie, O., Griffin, L.D., Baker, A. (2010). An objective method to quantify stool colour in neonatal cholestasis..

Sweet, A., Alexander, D.C. (2010). Reduced Encoding Persistent Angular Structure.

Tanner, C., Carter, T., Hawkes, D., Szekely, G. (2010). Cylindrical Affine Transformation Model for Image Registration.

Tanner, C., Hipwell, J.H., Hawkes, D.J., Szekely, G. (2010). Breast Shapes on Real and Simulated Mammograms.

TARVAINEN, T., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2010). Corrections to linear methods for diffuse optical tomography using approximation error modelling. Biomedical Optics Express, 1 (1), 209-222. doi:10.1364/BOE.1.000209

Tarvainen, T., Kolehmainen, V., Pulkkinen, A., Vauhkonen, M., Schweiger, M., Arridge, S.R., Kaipio, J.P. (2010). Approximation error approach for compensating for modelling errors between the radiative transfer equation and diffusion approximation in diffuse optical tomography. Inverse Problems, 26 015005-. doi:10.1088/0266-5611/26/1/015005

Vuissoz, P.A., Odille, F., Fernandez, B., Lohezic, M., Benhadid, A., Mandry, D., Felblinger, J. (2010). Analysis of cardio-respiratory motion of the heart Using GRICS (first insights).

Wells, J.C.K., Griffin, L., Treleaven, P. (2010). Independent Changes in Female Body Shape with Parity and Age: A Life-History Approach to Female Adiposity. AMERICAN JOURNAL OF HUMAN BIOLOGY, 22 (4), 456-462. doi:10.1002/ajhb.21017

Wheeler-Kingshott, C.A.M., Ciccarelli, O., Schneider, T., Alexander, D.C., Cercignani, M. (2010). A new approach to structural integrity assessment based on axial and radial diffusivities.

Yang, G., Hipwell, J.H., Clarkson, M.J., Tanner, C., Mertzanidou, T., Gunn, S., ...Arridge, S.R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis.

Yang, G., Hipwell, J.H., Clarkson, M.J., Tanner, C., Mertzanidou, T., Gunn, S., ...Arridge, S.R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis..

Yogarajah, M., Focke, N.K., Bonelli, S.B., Thompson, P., Vollmar, C., McEvoy, A.W., ...Duncan, J.S. (2010). The structural plasticity of white matter networks following anterior temporal lobe resection.. BRAIN, 133 2348-2364. doi:10.1093/brain/awq175

Zacharopoulos, A., Garofalakis, A., Ripoll, J., Arridge, S. (2010). Development of in-vivo fluorescence imaging with the Matrix-Free method.

Zhuang, X., Hawkes, D.J., Ourselin, S. (2010). Spatial Information Encoded Mutual Information for Nonrigid Registration..

Zhuang, X., Leung, K., Rhode, K., Razavi, R., Hawkes, D., Ourselin, S. (2010). Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy.

Zhuang, X., Rhode, K.S., Razavi, R.S., Hawkes, D.J., Ourselin, S. (2010). A registration-based propagation framework for automatic whole heart segmentation of cardiac MRI.. IEEE Trans Med Imaging, 29 (9), 1612-1625. doi:10.1109/TMI.2010.2047112

Zhuang, X., Yao, C., Ma, Y., Hawkes, D.J., Penney, G.P., Ourselin, S. (2010). Registration-based propagation for whole heart segmentation from compounded 3D echocardiography..

2009

Alexander, D.C. (2009). Modelling, Fitting and Sampling in Diffusion MRI. In Laidlaw, D., Weickert, J. (Eds.), Visualization and Processing of Tensor Fields. (pp. 3-20). Springer Verlag.

Alexander, D.C., Hubbard, P.L., Hall, M.G., Moore, E.A., Ptito, M., Parker, G.J.M., Dyrby, T.B. (2009). Orientationally invariant axon-size and density weighted MRI.

Allain, B., Hu, M.X., Lovat, L.B., Ourselin, S., Cook, R., Hawkes, D.J. (2009). Biopsy Site Re-localisation based on the Computation of Epipolar Lines from Two Previous Endoscopic Images.

Allain, B., Price, A., Vercauteren, T.K., Cook, R.J., Ourselin, S., Lythgoe, M.F., Hawkes, D.J. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging.

Arridge, S.R., Schotland, J.C. (2009). Optical tomography: forward and inverse problems. INVERSE PROBLEMS, 25 (12), doi:10.1088/0266-5611/25/12/123010

Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S. (2009). Imaging of highly scattering media by spatially modulated pulsed light.

Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2009). Detection of inhomogeneities in diffusive media using spatially modulated light. Optics Letters, 34 2156-2158.

Beard, P.C., Laufer, J.G., Cox, B.T., Arridge, S.R. (2009). Quantitative photoacoustic imaging: measurement of absolute chromophore concentrations for physiological and molecular imaging. In Wang, L.V. (Ed.), Photoacoustic Imaging and Spectroscopy. Taylor and Francis.

Boubertakh, R., Prieto, C., Batchelor, P.G., Uribe, S., Atkinson, D., Eggers, H., ...Schaeffter, T. (2009). Whole-heart imaging using undersampled radial phase encoding (RPE) and iterative sensitivity encoding (SENSE) reconstruction. Magnetic Resonance in Medicine, 62 (5), 1331-1337. doi:10.1002/mrm.22102

Brostow, G.J., Fauqueur, J., Cipolla, R. (2009). Semantic object classes in video: A high-definition ground truth database. PATTERN RECOGN LETT, 30 (2), 88-97. doi:10.1016/j.patrec.2008.04.005

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2009). DEMONS ALGORITHMS FOR FLUID AND CURVATURE REGISTRATION.

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2009). A Demons Algorithm for Image Registration with Locally Adaptive Regularization.

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2009). A Demons algorithm for image registration with locally adaptive regularization. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5761 LNCS (PART 1), 574-581. doi:10.1007/978-3-642-04268-3_71

Cahill, N.D., Schnabel, J.A., Noble, J.A., Hawkes, D.J. (2009). Overlap invariance of cumulative residual entropy measures for multimodal image alignment.

Carter, T.J., Tanner, C., Hawkes, D.J. (2009). Determining material properties of the breast for image-guided surgery.

Chinchapatnam, P., Ginks, M., Sermesant, M., Rhode, K., Arridge, S., Lambiase, P., ...Razavi, R. (2009). A novel method of estimating electrical recruitability of myocardial tissue using an electrophysiological model.

Chinchapatnam, P., Rhode, K.S., Ginks, M., Mansi, T., Peyrat, J.M., Lambiase, P., ...Sermesant, M. (2009). Estimation of volumetric myocardial apparent conductivity from endocardial electro-anatomical mapping.. Conf Proc IEEE Eng Med Biol Soc. 2009;, (1), 2907-2910.

Chinchapatnam, P., Rhode, K.S., Ginks, M., Nair, P.B., Razavi, R., Arridge, S.R., Sermesant, M. (2009). Voxel Based Adaptive Meshless Method for Cardiac Electrophysiology Simulation..

Choe, R., Konecky, S.D., Corlu, A., Lee, K., Durduran, T., Busch, D., ...Fraker, D.L. (2009). Differentiation of Benign and Malignant Breast Tumor by in-vivo Parallel-Plate Diffuse Optical Tomography. Journal of Biomedical Optics, 14 (2),

Choe, R., Konecky, S.D., Corlu, A., Lee, K., Durduran, T., Busch, D.R., ...Fraker, D.L. (2009). Differentiation of benign and malignant breast tumors by in-vivo three-dimensional parallel-plate diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 14 (2), doi:10.1117/1.3103325

Clarkson, M.J., Ourselin, S., Nielsen, C., Leung, K.K., Barnes, J., Whitwell, J.L., ...Jack, C.R. (2009). Comparison of phantom and registration scaling corrections using the ADNI cohort. NeuroImage, 47 (4), 1506-1513. doi:10.1016/j.neuroimage.2009.05.045

Clayden, J.D., Nagy, Z., Alexander, D.C., Clark, C.A. (2009). Axon radius estimation using optimised Stejskal-Tanner and dual spin echo sequences at modest SNR.

Clayden, J.D., Nagy, Z., Hall, M.G., Clark, C.A., Alexander, D.C. (2009). Active imaging with dual spin-echo diffusion MRI.. 264-275.

Clayden, J.D., Nagy, Z., Hall, M.G., Clark, C.A., Alexander, D.C. (2009). Active imaging with dual spin-echo diffusion MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5636 LNCS 264-275. doi:10.1007/978-3-642-02498-6_22

Cox, B.T., Arridge, S.R., Beard, P.C. (2009). Estimating chromophore distributions from multiwavelength photoacoustic images. Journal of the Optical Society of America, 26 (2), 443-455. doi:10.1364/JOSAA.26.000443

D'Andrea, C., Bassi, A., Valentini, G., Cubeddu, R., Arridge, S. (2009). Structured illumination and time gated detection for diffuse optical imaging.

D'Andrea, C., Bassi, A., Valentini, G., Cubeddu, R., Arridge, S. (2009). Structured illumination and time gated detection for diffuse optical imaging.

Dyrby, T.B., Baare, W.F.C., Alexander, D.C., Jelsing, J., Garde, E., Sogaard, L.V. (2009). Longitudinal changes in diffusivity after long-term storage of postmortem tissue.

Edgar, J., Muthurangu, V., Taylor, A., Atkinson, D. (2009). Undersampled Spirals for Real-time Flow Measurements.

Fonteijn, H.M., Hall, M.G., Alexander, D.C. (2009). A study on the validity of the tortuosity approximation for extracellular diffusion using monte-carlo simulations.

Griffin, L.D. (2009). Symmetries of 2-D Images: Cases without Periodic Translations. JOURNAL OF MATHEMATICAL IMAGING AND VISION, 34 (3), 259-269. doi:10.1007/s10851-009-0148-z

Griffin, L.D., Lillholm, M., Crosier, M., van Sande, J. (2009). Basic Image Features (BIFs) Arising from Approximate Symmetry Type.

Hall, M.G., Alexander, D.C. (2009). Convergence and parameter choice for Monte-Carlo simulations of diffusion MRI. IEEE Transactions on Medical Imaging, 28 (9), 1354-1364.

Haroon, H.A., Morris, D.M., Embleton, K.V., Alexander, D.C., Parker, G.J.M. (2009). Using the Model-Based Residual Bootstrap to Quantify Uncertainty in Fiber Orientations From Q-Ball Analysis. IEEE TRANSACTIONS ON MEDICAL IMAGING, 28 (4), 535-550. doi:10.1109/TMI.2008.2006528

Hawkes, D.J., Hu, Y., Ahmed, H.U., Emberton, M., Barratt, D. (2009). Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2009. Springer.

Hawkes, D., McClelland, J., Modat, M., Barratt, D., Rijkhorst, E., Hu, Y., ...Ourselin, S. (2009). IMAGE REGISTRATION, MOTION MODELING AND TISSUE DEFORMATION.

Hill, D.L.G., Hawkes, D.J. (2009). Across-modality registration using intensity-based cost functions. .

Hiltunen, P., Arridge, S., Prince, S. (2009). A combined reconstructions classification method for diffuse optial tomography. Physics in Medicine and Biology, 54 6457-6476.

Hughes, S., Boutland, J., Adams, M., McClelland, J., Deehan, C., Hawkes, D., Landau, D. (2009). A study to find a suitable fiducial marker to validate the use of non-rigid registration (NRR) algorithms and 4D-CT motion modelling in lung cancer radiotherapy.

Hughes, S., McClelland, J., Tarte, S., Lawrence, D., Ahmad, S., Hawkes, D., Landau, D. (2009). Assessment of two novel ventilatory surrogates for use in the delivery of gated/tracked radiotherapy for non-small cell lung cancer. RADIOTHERAPY AND ONCOLOGY, 91 (3), 336-341. doi:10.1016/j.radonc.2009.03.016

Hu, M., Penney, G.P., Rueckert, D., Edwards, P.J., Bello, F., Casula, R., ...Hawkes, D.J. (2009). Non-rigid Reconstruction of the Beating Heart Surface for Minimally Invasive Cardiac Surgery.

Husakov, A., Herrmann, J. (2009). Chirped multilayer hollow waveguides with broadband transmission.. Optics express, 17 (5), 3016-3024. doi:10.1364/oe.17.003025

Hu, Y., Ahmed, H.U., Allen, C., Pendse, D., Sahu, M., Emberton, M., ...Barratt, D. (2009). MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions.

Hu, Y., Ahmed, H.U., Allen, C., Pendsé, D., Sahu, M., Emberton, M., ...Barratt, D. (2009). MR to ultrasound image registration for guiding prostate biopsy and interventions.

Karssemeijer, N., Huisman, H., Hawkes, D., Hipwell, J., Boehler, T., Lesniak, J., ...Hahn, H. (2009). INTEGRATING BIOLOGICAL KNOWLEDGE, NOVEL IMAGING MODALITIES, AND MODELING IN BREAST CANCER DIAGNOSIS.

King, A.P., Boubertakh, R., Rhode, K.S., Ma, Y.L., Chinchapatnam, P., Gao, G., ...Gill, J.S. (2009). A subject-specific technique for respiratory motion correction in image-guided cardiac catheterisation procedures. MEDICAL IMAGE ANALYSIS, 13 (3), 419-431. doi:10.1016/j.media.2009.01.003

Kolehmainen, V., Schweiger, M., Nissila, I., Tarvainen, T., Arridge, S.R., Kaipio, J.P. (2009). Approximation errors and model reduction in three-dimensional diffuse optical tomography. Journal of the Optical Society of the America A, 26 (10), 2257-2267. doi:10.1364/JOSAA.26.002257

Lillholm, M., Griffin, L.D. (2009). Statistics and category systems for the shape index descriptor of local 2nd order natural image structure. IMAGE AND VISION COMPUTING, 27 (6), 771-781. doi:10.1016/j.imavis.2008.08.003

Maheswaran, S., Barjat, H., Bate, S.T., Aljabar, P., Hill, D.L.G., Tilling, L., ...Rueckert, D. (2009). Analysis of serial magnetic resonance images of mouse brains using image registration. NeuroImage, 44 (3), 692-700. doi:10.1016/j.neuroimage.2008.10.016

Maheswaran, S., Barjat, H., Rueckert, D., Bate, S.T., Howlett, D.R., Tilling, L., ...Hartkens, T. (2009). Longitudinal regional brain volume changes quantified in normal aging and Alzheimer's APP × PS1 mice using MRI. Brain Research, 1270 19-32. doi:10.1016/j.brainres.2009.02.045

McGinty, J., Soloviev, V.Y., Tahir, K.B., Laine, R., Stuckey, D.W., Hajnal, J.V., ...Arridge, S.R. (2009). Three-dimensional imaging of Förster resonance energy transfer in heterogeneous turbid media by tomographic fluorescent lifetime imaging. Optics Letters, 34 (17), 2772-2774.

Melbourne, A., Collins, D.J., Leach, M.O., Koh, D.-.M., Hawkes, D.J., Atkinson, D. (2009). Contrast Enhanced Image Registration using Kullbach-Leibler Assisted Image Matching and Patching (KLAMP).

Melbourne, A., Hawkes, D.J., Atkinson, D. (2009). Image registration using uncertainty coefficients.

Melbourne, A., Orton, M., Collins, D.J., Koh, D.-.M., Leach, M.O., Hawkes, D.J., Atkinson, D. (2009). The effect of image registration on pharmacokinetic parameter extraction using 3D DCE-MRI.

Miyazaki, K., Orton, M.R., Koh, D.-.M., Lewington, V., Atkinson, D., Hawkes, D.J., ...Collins, D.J. (2009). Evaluation of slope-based hepatic perfusion index quantification methods against dual-input kinetic model based approach.

Miyazaki, K., Orton, M.R., Lewington, V., Atkinson, D., Hawkes, D.J., Leach, M.O., Collins, D.J. (2009). Hepatic perfusion quantification using a dual-input kinetic model with a novel portal venous estimation method: Evaluation against other model- and slope-based perfusion quantification approaches.

Modat, M., Ridgway, G.R., Taylor, Z.A., Hawkes, D.J., Fox, N.C., Ourselin, S. (2009). A parallel-friendly normalized mutual information gradient for free-form registration.

Nagy, Z., Alexander, D.C., Weiskopf, N. (2009). Measuring and correcting errors that occur in diffusion weighted images due to non-ideal gradient linearity.

Nedjati-Gilani, S., Alexander, D.C. (2009). Fanning and bending sub-voxel structures in diffusion MRI.

Odille, F., Uribe, S., Schaeffter, T., Atkinson, D. (2009). Cardiac and respiratory motion compensated reconstruction driven only by 1D navigators.

Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2009). Onset estimation for dual input DCE-MRI liver data : information criteria used to determine statistical optimality of global or pixel-wise onset estimation.

Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2009). Novel method of portal delay and dispersion estimation for dual-input kinetic modelling of DCE-MRI liver data.

Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Hawkes, D.J., Atkinson, D., Leach, M.O. (2009). Optimizing Functional Parameter Accuracy for Breath-hold DCE-MRI of Liver Tumours. Physics in Medicine and Biology, 54 (7), 2197-2215. doi:10.1088/0031-9155/54/7/023

Panagiotaki, E., Fonteijn, H.M., Nedjati-Gilani, S., Hall, M.G., Alexander, D.C. (2009). Exploring analytic models of the diffusion MR signal in fixed rat brain tissue.

Panagiotaki, E., Fonteijn, H., Siow, B., Hall, M.G., Price, A., Lythgoe, M.F., Alexander, D.C. (2009). Two-compartment models of the diffusion MR signal in brain white matter. 1 329-336.

Panagiotou, C., Somayajula, S., Gibson, A.P., Schweiger, M., Leahy, R.M., Arridge, S.R. (2009). Information theoretic regularization in diffuse optical tomography.. Journal of the Optical Society of America, 26 (5), 1277-1290.

Panagiotou, C., Somayajula, S., Gibson, A.P., Schweiger, M., Leahy, R.M., Arridge, S.R. (2009). DIFFUSION OPTICAL TOMOGRAPHY USING ENTROPIC PRIORS.

Papastavrou, Y., Cash, D., Hawkes, D., Hutton, B. (2009). A Multi-component similarity measure for improved robustness of non-rigid registration of combined FDG PET-CT head and neck images.

Prieto, C., Uribe, S., Batchelor, P., Irarrazaval, P., Razavi, R., Atkinson, D., Schaeffter, T. (2009). 3D Undersampled Golden-Radial Phase Encoding Using Iterative Reconstructions and Inherent Regularization.

Prieto, C., Uribe, S., Razavi, R., Atkinson, D., Beerbaum, P., Schaeffter, T. (2009). 3D Dynamic Contrast-Enhanced Using Undersampled Golden-Radial Phase Encoding.

Prince, S.J.D., Alexander, D.C. (2009). Super-resolving patches in diffusion MRI using canonical fibre configurations.

Punwani, S., Halligan, S., Tolan, D., Taylor, S.A., Hawkes, D. (2009). Quantitative assessment of colonic movement between prone and supine patient positions during CT colonography.. BRITISH JOURNAL OF RADIOLOGY, 82 (978), 475-481. doi:10.1259/bjr/91937173

Ridgway, G.R., Omar, R., Ourselin, S., Hill, D.L.G., Warren, J.D., Fox, N.C. (2009). Issues with threshold masking in voxel-based morphometry of atrophied brains.. NeuroImage, 44 (1), 99-111. doi:10.1016/j.neuroimage.2008.08.045

Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2009). Preliminary investigation of position dependency of radial diffusivity in the cervical spinal cord.

Sermesant, M., Billet, F., Chabiniok, R., Mansi, T., Chinchapatnam, P., Moireau, P., ...Lambiase, P. (2009). Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy..

Sermesant, M., Billet, F., Chabiniok, R., Mansi, T., Chinchapatnam, P., Moireau, P., ...Lambiase, P. (2009). Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy.

Seunarine, K.K., Alexander, D.C. (2009). Multiple fibers: beyond the diffusion tensor. In Diffusion MRI: from quantitative measurement to in vivo neuroanatomy. (pp. 55-72). Academic Press.

Shepherd, T., Alexander, D.C. (2009). Mid-Level Shape Priors for Supervised Contouring.

Shepherd, T., Alexander, D.C. (2009). Probabilistic Time Series Models for Statistical Shape Priors in Region Contouring.

Siewerdsen, J., Hawkes, D., Keall, P. (2009). WE‐E‐303A‐01: Image‐Guided Therapies: Advances in Imaging, Modeling, and New Applications.

Soloviev, V.Y., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2009). Combined reconstruction of fluorescent and optical parameters using time-resolved data. Applied Optics, 48 (1), 28-36. doi:10.1364/AO.48.000028

Sorensen, T.S., Atkinson, D., Schaeffter, T., Hansen, M.S. (2009). Real-Time Reconstruction of Sensitivity Encoded Radial Magnetic Resonance Imaging Using a Graphics Processing Unit. IEEE Transactions on Medical Imaging, 28 (12), 1974-1985. doi:10.1109/TMI.2009.2027118

Steeden, J.A., Atkinson, D., Taylor, A., Muthurangu, V. (2009). Real-time Flow Measurements for the Assessment of Hemodynamic Response to Exercise.

Tanner, C., Hipwell, J.H., Hawkes, D.J. (2009). Using statistical deformation models for the registration of multimodal breast images. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 7259 doi:10.1117/12.811631

Tanner, C., White, M., Guarino, S., Hall-Craggs, M.A., Douek, M., Hawkes, D.J. (2009). Anisotropic Behaviour of Breast Tissue for Large Compressions.

Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2009). On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution.. Medical Image Analysis, 13 (2), 234-244. doi:10.1016/j.media.2008.10.001

Thompson, S.A., Penney, G., Carter, T., Dasgupta, P., Hawkes, D. (2009). Accuracy Analysis of an Image Guided Robotic Urology Surgery System.

Thompson, S.A., Penney, G., Dasgupta, P., Hawkes, D. (2009). Image Guidance in Robot Assisted Prostatectomy.

Wheeler-Kingshott, C.A.M., Alexander, D.C., Cercignani, M. (2009). The relationship between "axial" and "radial" diffusivities and the eigenvectors of the diffusion tensor in the brain.

Wheeler-Kingshott, C.A.M., Alexander, D.C., Schneider, T., Cercignani, M. (2009). Measuring axial and radial diffusivities in the brain..

White, M.J., Hawkes, D.J., Melbourne, A., Collins, D.J., Coolens, C., Hawkins, M., ...Atkinson, D. (2009). Motion artefact correction in free-breathing abdominal MRI using overlappingpartial samples to recover image deformations. Magnetic Resonance in Medicine, 62 (2), 440-449. doi:10.1002/mrm.22017

Wright, S., Arridge, S., Schweiger, M. (2009). A finite element method for the even-parity Radiative Transfer Equation using the P N Approximation. In Numerical Methods in Multidimensional Radiative Transfer. (pp. 39-48). .

Yogarajah, M., Focke, N., Bonelli, S., Parker, G., Alexander, D., Thompson, P., ...Duncan, J. (2009). TRACTOGRAPHY AND THE DISTRIBUTED NETWORK DAMAGE UNDERLYING MEMORY IMPAIRMENT IN TEMPORAL LOBE EPILEPSY.

Yogarajah, M., Focke, N., Bonelli, S., Parker, G.J.M., Alexander, D.C., Symms, M.R., ...Duncan, J.S. (2009). TRACTOGRAPHY OF THE OPTIC RADIATION IN PRESURGICAL TEMPORAL LOBE EPILEPSY PATIENTS.

Yogarajah, M., Focke, N., Bonelli, S., Parker, G.J.M., Alexander, D.C., Thompson, P., ...Duncan, J. (2009). A disproportionate role for the fornix in recall rather than recognition memory - tractography evidence in temporal lobe epilepsy.

Yogarajah, M., Focke, N., Cercignani, M., Acheson, J., Bonnelli, S., Parker, G., ...Koepp, M. (2009). TRACTOGRAPHY OF MEYER'S LOOP AND TEMPORAL LOBE RESECTION.

Yogarajah, M., Focke, N.K., Bonelli, S., Cercignani, M., Acheson, J., Parker, G.J., ...Koepp, M.J. (2009). Defining Meyer's loop-temporal lobe resections, visual field deficits and diffusion tensor tractography. Brain, 132 (6), 1656-1668. doi:10.1093/brain/awp114

Zacharopoulos, A.D., Svenmarker, P., Axelsson, J., Schweiger, M., Arridge, S.R., Andersson-Engels, S. (2009). A matrix-free algorithm for multiple wavelength fluorescence tomography. OPTICS EXPRESS, 17 (5), 3025-3035. doi:10.1364/OE.17.003025

Zacharopoulos, A., Schweiger, M., Kolehmainen, V., Arridge, S. (2009). 3D shape based reconstruction of experimental data in Diffuse Optical Tomography. OPTICS EXPRESS, 17 (21), 18940-18956. doi:10.1364/OE.17.018940

Zhuang, X., Hawkes, D.J., Ourselin, S. (2009). Unifying encoding of spatial information in mutual information for nonrigid registration.

Zhuang, X., Rhode, K., Razavi, R., Hawkes, D.J., Ourselin, S. (2009). Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation.

2008

Abascal, J.-.F.P.J., Arridge, S.R., Bayford, R.H., Holder, D.S. (2008). Comparison of methods for optimal choice of the regularization parameter for linear electrical impedance tomography of brain function. Physiological measurement, 29 (11), 1319-.

Abascal, J.P.J., Arridge, S.R., Atkinson, D., Horesh, R., Fabrizi, L., De Lucia, M., ...Holder, D.S. (2008). Use of anisotropic modelling in electrical impedance tomography; description of method and preliminary assessment of utility in imaging brain function in the adult human head. Neuroimage, 43 (2), 258-268.

Alexander, D.C. (2008). A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features.. Magnetic Resonance in Medicine, 60 439-448.

Arridge, S.R., Dorn, O., Kolehmainen, V., Schweiger, M., Zacharopoulos, A. (2008). Parameter and structure reconstruction in optical tomography.

Arridge, S.R., Kolehmainen, V., Schweiger, M. (2008). Reconstruction and Regularisation in Optical Tomography.

Arridge, S.R., Panagiotou, C., Schweiger, M., Kolehmainen, V. (2008). Multimodal Diffuse Optical Tomography : Theory. In Azar, F.S., Intes, X. (Eds.), Translational multimodality optical imaging. (pp. 101-124). Artech.

Atkinson, D., Hansen, M.S., Modat, M., Ourselin, S., Sørensen, T.S., Taylor, Z. (2008). Commodity Graphics Cards for Image Registration, Biomechanical Modelling and Cardiac Imaging.

Bai, Y., Alexander, D.C. (2008). Model-Based Registration to Correct for Motion between Acquisitions in Diffusion MR Imaging.

Barratt, D.C., Chan, C.S.K., Edwards, P.J., Penney, G.P., Slomczykowksy, M., Carter, T.J., Hawkes, D.J. (2008). Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging. Medical Image Analysis, 12 (3), 358-374. doi:10.1016/j.media.2007.12.006

Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S. (2008). Temporal propagation of spatial information in turbid media. OPTICS LETTERS, 33 (23), 2836-2838. doi:10.1364/OL.33.002836

Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2008). propagation of spatial information in turbid media. Optics Letters, 33 (23), 2836-2838.

Batchelor, P.G., Alexander, D.C. (2008). The Influence of Microscopic Shape Invariants in Diffusion MRI and on Time Correlations.

Boyes, R.G., Gunter, J.L., Frost, C., Janke, A.L., Yeatman, T., Hill, D.L.G., ...Schuff, N. (2008). Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils. NeuroImage, 39 (4), 1752-1762. doi:10.1016/j.neuroimage.2007.10.026

Brostow, G., Shotton, J., Fauqueur, J., Cipolla, R. (2008). Segmentation and Recognition using Structure from Motion Point Clouds.

Cahill, N.D., Schnabel, J.A., Noble, J.A., Hawkes, D.J. (2008). Revisiting Overlap Invariance in Medical Image Alignment.

Camara, O., Schnabel, J.A., Ridgway, G.R., Crum, W.R., Douiri, A., Scahill, R.I., ...Fox, N.C. (2008). Accuracy assessment of global and local atrophy measurement techniques with realistic simulated longitudinal Alzheimer's disease images. NeuroImage, 42 (2), 696-709. doi:10.1016/j.neuroimage.2008.04.259

Carter, T.J., Tanner, C., Barratt, D.C., Beechey-Newman, N., Hawkes, D.J. (2008). MR Navigated Breast Surgery: Method and Initial Clinical Experience.

Carter, T., Tanner, C., Beechey-Newman, N., Barratt, D., Hawkes, D. (2008). MR navigated breast surgery: Method and initial clinical experience.

Chandler, A.G., Pinder, R.J., Netsch, T., Schnabel, J.A., Hawkes, D.J., Hill, D.L.G., Razavi, R. (2008). Correction of misaligned slices in multi-slice cardiovascular magnetic resonance using slice-to-volume registration. JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE, 10 doi:10.1186/1532-429X-10-13

Chinchapatnam, P., Rhode, K.S., Ginks, M., Rinaldi, C.A., Lambiase, P., Razavi, R., ...Sermesant, M. (2008). Model-based imaging of cardiac apparent conductivity and local conduction velocity for diagnosis and planning of therapy. IEEE Trans Med Imaging.. IEEE Transactions on Medical Imaging, 27 (11), 1631-1642.

Chinchapatnam, P., Rhode, K.S., Ginks, M., Rinaldi, C.A., Lambiase, P., Razavi, R., ...Sermesant, M. (2008). Model-based imaging of cardiac apparent conductivity and local conduction velocity for diagnosis and planning of therapy.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 27 (11), 1631-1642. doi:10.1109/TMI.2008.2004644

Colgan, R., McClelland, J., McQuaid, D., Evans, P.M., Hawkes, D., Brock, J., ...Webb, S. (2008). Planning lung radiotherapy using 4D CT data and a motion model. PHYSICS IN MEDICINE AND BIOLOGY, 53 (20), 5815-5830. doi:10.1088/0031-9155/53/20/017

Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Simultaneous estimation of chromophore concentration and scattering distributions from multiwavelength photoacoustic images.

Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Photoacoustic tomography using reverberant field data from a single detector.

Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Simultaneous Estimation of Chromophore Concentration and scattering distributions from multiwavelength photoacoustic images.

Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Photoacoustic tomography using reverberant field data from a single detector.

Crosier, M., Griffin, L.D. (2008). Texture classification with a dictionary of basic image features.

Draganski, B., Kherif, F., Kloppel, S., Cook, P.A., Alexander, D.C., Parker, G.J., ...Frackowiak, R.S. (2008). Evidence for segregated and integrative connectivity patterns in the human Basal Ganglia. Journal of Neuroscience, 28 (28), 7143-7152. doi:10.1523/JNEUROSCI.1486-08.2008

Dyrby, T.B., Jelsing, J., Alexander, D.C., Sogaard, L.V. (2008). Acquiring optimal DWI data for tractography on post-mortem brain tissue.

Enfield, L.C., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., Sharma, A., ...Keshtger, M. (2008). Sensitivity and Specificity of 3-D Optical Mammography.

Figl, M., Rueckert, D., Hawkes, D., Casula, R., Hu, M., Pedro, O., ...Edwards, P. (2008). Augmented reality image guidance for minimally invasive coronary artery bypass.

Figl, M., Rueckert, D., Hawkes, D., Casula, R., Hu, M., Pedro, O., ...Edwards, P. (2008). Image guidance for robotic minimally invasive coronary artery bypass.

Gao, G., Tarte, S., King, A., Ma, Y., Chinchapatnam, P., Schaeffter, T., ...Rhode, K. (2008). Validation of the use of photogrammetry to register preprocedure MR images to intra-procedure patient position for image-guided cardiac catheterization procedures - art. no. 69181Q.

Gao, G., Tarte, S., King, A., Ma, Y., Chinchapatnam, P., Schaeffter, T., ...Rhode, K. (2008). Validation of the use of photogrammetry to register preprocedure MR images to intra-procedure patient position for image-guided cardiac catheterization procedures.

Gibson, A.P., Enfield, L.C., Schweiger, M., Arridge, S.R., Douek, M., Hebden, J.C. (2008). 3D Optical mammography of the uncompressed breast.

Greenhalgh, R., Hu, Y., Barratt, D., Tolan, D., Taylor, S.A., Hawkes, D., Halligan, S. (2008). Can Us elastography help characterise anal sphincter pathology?.

Griffin, L.D. (2008). Detecting image symmetry using single linear filters.

Griffin, L.D. (2008). Symmetries of 1-D images. Journal of Mathematical Imaging and Vision, 31 (2-3), 157-164. doi:10.1007/s10851-008-0078-1

Griffin, L.D., Lillholm, M. (2008). Classifying local image symmetry using a co-localised family of linear filters. PERCEPTION, 37 122.

Gullick, N.J., Amati, G., Penney, G.P., Rhode, K., Schaeffter, T., Hill, D., ...Oakley, S.P. (2008). Localisation of synovial biopsy using infra-red tracking.

Hall, M.G., Alexander, D.C. (2008). Agreement and disagreement in two models of synthetic diffusion MR data.

Hall, M.G., Alexander, D.C. (2008). A hexagon is a circle.

Hall, M.G., Alexander, D.C. (2008). A tissue model of white matter undergoing tissue swelling.

Hansen, M.S., Atkinson, D., Sorensen, T.S. (2008). Cartesian SENSE and k-t SENSE reconstruction using commodity graphics hardware. Magn Reson.Med, 59 (3), 463-468. doi:10.1002/mrm.21523

Hansen, M.S., Atkinson, D., Sorensen, T.S. (2008). Interactive Adjustment of Regularization in SENSE and k-t SENSE using Commodity Graphics Hardware.

Hawkes, D., Barratt, D., Carter, T., McClelland, J., Crum, B. (2008). Nonrigid registration. In Image-Guided Interventions: Technology and Applications. (pp. 193-218). .

Hipwell, J., Tanner, C., Crum, W.R., Schnabel, J., Hawkes, D.J. (2008). A new validation method for validation of X-ray Mammogram Registration Algorithms using a Projection Model of Breast X-ray Compression. IEEE Transactions on Medical Imaging, 26 1190-1200. doi:10.1088/0031-9155/52/16/007

Hipwell, J., Tanner, C., Crum, W.R., Schnabel, J., Hawkes, D.J. (2008). A new validation method for validation of X-ray Mammogram Registration Algorithms using a Projection Model of Breast X-ray Compression. IEEE Transactions on Medical Imaging, 26 1190-1200. doi:10.1088/0031-9155/52/16/007

Hughes, S., McClelland, J., Chandler, A., Adams, M., Boutland, J., Withers, D., ...Hawkes, D. (2008). A comparison of internal target volume definition by limited four-dimensional computed tomography, the addition of patient-specific margins, or the addition of generic margins when planning radical radiotherapy for lymph node-positive non-small cell lung cancer. CLINICAL ONCOLOGY, 20 (4), 293-300. doi:10.1016/j.clon.2007.12.004

Hughes, S., McClelland, J., Tarte, S., Ahmad, S., Hawkes, D., Landau, D. (2008). ASSESSMENT OF 2 NOVEL RESPIRATORY SIGNALS FOR USE IN THE DELIVERY OF GATED / TRACKED RADIOTHERAPY FOR NON-SMALL CELL LUNG CANCER.

Hu, M., Penney, G., Rueckert, D., Edwards, P., Figl, M., Pratt, P., Hawkes, D. (2008). A novel algorithm for heart motion analysis based on geometric constraints.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2008, PT I, PROCEEDINGS, 5241 720-+.

Hu, M.X. (2008). Image Guidance for Robotic Minimally Invasive Coronary Artery Bypass.

Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D. (2008). A statistical motion model based on biomechanical simulations for data fusion during image-guided prostate interventions.

Hu, Y., Morgan, D., Ahmed, H.U., Pendse, D., Sahu, M., Allen, C., ...Barratt, D. (2008). Modelling prostate gland motion for image-guided interventions.

Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D. (2008). A statistical motion model based on biomechanical simulations for data fusion during image-guided prostate interventions..

Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D.C. (2008). Modelling Prostate Gland Motion for Image-Guided Interventions..

Jack, C.R., Bernstein, M.A., Fox, N.C., Thompson, P., Alexander, G., Harvey, D., ...Ward, C. (2008). The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods. JOURNAL OF MAGNETIC RESONANCE IMAGING, 27 (4), 685-691. doi:10.1002/jmri.21049

Jack, C.R., Bernstein, M.A., Fox, N.C., Thompson, P., Alexander, G., Harvey, D., ...Ward, C. (2008). The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods. Journal of Magnetic Resonance Imaging, 27 (4), 685-691. doi:10.1002/jmri.21049

Kashani, R., Hub, M., Balter, J.M., Kessler, M.L., Dong, L., Zhang, L., ...Schnabel, J.A. (2008). Objective assessment of deformable image registration in radiotherapy: A multi-institution study. MEDICAL PHYSICS, 35 (12), 5944-5953. doi:10.1118/1.3013563

Kastanis, I., Arridge, S.R., Stewart, A., Gunn, S., Ullberg, C., Francke, T. (2008). 3D Digital Breast Tomosynthesis Using Total Variation Regularization..

King, A.P., Boubertakh, R., Ng, K.L., Ma, Y.L., Chinchapatnam, P., Gao, G., ...Rhode, K.S. (2008). A technique for respiratory motion correction in image guided cardiac catheterisation procedures.

Kloppel, S., Draganski, B., Golding, C.V., Chu, C., Nagy, Z., Cook, P.A., ...Parker, G.J. (2008). White matter connections reflect changes in voluntary-guided saccades in pre-symptomatic Huntington's disease. Brain, 131 (1), 196-204. doi:10.1093/brain/awm275

Lillholm, M., Griffin, L. (2008). Larger feature alphabets can improve object recognition even with simpler visual words.

Lillholm, M., Griffin, L. (2008). Novel Image Feature Alphabets for Object Recognition.

Maheswaran, S., Barjat, H., Bate, S.T., Hartkens, T., Hill, D.L.G., Tilling, L., ...Rueckert, D. (2008). Deformation based morphmetry and atlas based label segmentation: Application to serial mouse brain images.

Mang, A., Schnabel, J.A., Crum, W.R., Modat, M., Camara-Rey, O., Palm, C., ...Buzug, T.M. (2008). Consistency of parametric registration in serial MRI studies of brain tumor progression. International Journal of Computer Assisted Radiology and Surgery, 3 201---211.

Ma, Y.L., Rhode, K.S., Gao, G., King, A.P., Chinchapatnam, P., Schaeffter, T., ...Penney, G.P. (2008). Ultrasound calibration using intensity-based image registration: For application in cardiac catheterization procedures.

McClelland, J., Gao, G., Tarte, S., Blackall, J., Hughes, S., Ahmad, S., ...Hawkes, D. (2008). Removing Artifacts From 4DCT Volumes Acquired in Cine Mode Using B-Spline Non-Rigid Registrations.

McGinty, J., Tahir, K.B., Soloviev, V.Y., Laine, R., Sardini, A., Talbot, C.B., ...Hajnal, J.V. (2008). Time-Domain Fluorescence Lifetime Tomography.

Melbourne, A., Atkinson, D. (2008). Image Registration Method.

Melbourne, A., Atkinson, D., Hawkes, D. (2008). Influence of Organ Motion and Contrast Enhancement on Image Registration. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2008. (pp. 948-955). Springer Berlin Heidelberg.

Melbourne, A., Atkinson, D., Hawkes, D.J. (2008). Influence of Organ Motion and Contrast Enhancement on Successful Registration.

Melbourne, A., Hawkes, D.J., Atkinson, D. (2008). Non-Rigid Registration of Diffusion Weighted MRI using Progressive Principal Component Registration.

Miyazaki, K., Collins, D.J., Koh, D.-.M., Atkinson, D., Hawkes, D.J., Leach, M.O. (2008). Evaluation of quantitative dynamic contrast enhanced pharmacokinetic parameters with and without postprocessing.

Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2008). Regularized Super-Resolution for Diffusion MRI.

Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2008). Regularized Super-Resolution for Diffusion MRI.

Nunes, R.G., Hajnal, J.V., Batchelor, P.G., Atkinson, D., Larkman, D.J. (2008). Continuously moving table acquisitions: Generalised Image Reconstruction Accounting For Field Effects (GIRAFFE).

Odille, F., Vuissoz, P.-.A., Felblinger, J., Atkinson, D. (2008). GENERALIZED RECONSTRUCTION BY INVERSION OF COUPLED SYSTEMS (GRICS) APPLIED TO PARALLEL MRI.

Orton, M.R., Collins, D.J., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Effect of Image Acquisition Protocol on Vascular Parameter Estimates from DCE-MRI Liver Data.

Orton, M.R., Collins, D.J., Walker-Samuel, S., d'Arcy, J.A., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Bayesian estimation of pharmacokinetic parametersfor DCE-MRI with a robust treatment of enhancement onset time. Physics in Medicine and Biology, 52 (9), 2393-2408. doi:10.1088/0031-9155/52/9/005

Orton, M.R., Collins, D.J., Walker-Samuel, S., d'Arcy, J.A., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Bayesian estimation of pharmacokinetic parameters for DCE-MRI with a robust treatment of enhancement onset time.. Physics in Medicine and Biology, 52 (9), 2393-2408. doi:10.1088/0031-9155/52/9/005

Orton, M.R., d'Arcy, J.A., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2008). Portal Delay Estimation from DCE-MRI Liver Tissue Data: Feasibility and Effect on Vascular Parameter Estimates.

Orton, M.R., d'Arcy, J.A., Walker-Samuel, S., Hawkes, D.J., Atkinson, D., Collins, D.J., Leach, M.O. (2008). Computationally efficient vascular input function models for quantitative kinetic modelling using DCE-MRI. Physics in Medicine and Biology, 53 (5), 1225-1239. doi:10.1088/0031-9155/53/5/005

Orton, M.R., d'Arcy, J.A., Walker-Samuel, S., Hawkes, D.J., Atkinson, D., Collins, D.J., Leach, M.O. (2008). Computationally efficient vascular input function models for quantitative kinetic modelling using DCE-MRI.. Physics in medicine and biology, 53 (5), 1225-1239. doi:10.1088/0031-9155/53/5/005

Padormo, F., Nunes, R.G., Atkinson, D., Batchelor, P.G., Hajnal, J.V., Larkman, D.J. (2008). An Approach to Coil Calibration Based on Prior Training Data.

Palm, C., Penney, G.P., Crum, W.R., Schnabel, J.A., Pietrzyk, U., Hawkes, D.J. (2008). Fusion of rat brain histology and MRI using weighted multi-image mutual information.

Penney, G.P., Griffin, L.D., King, A.P., Hawkes, D.J. (2008). A novel framework for multi-modal intensity-based similarity measures based on internal similarity.

Phani Chinchapatnam, M.R.G., Maxime Sermesant, K.R., Simon Arridge, P.D.L., Julian Bostock, C.A.R., and, R.R. (2008). A Novel Electrophysiological Model Using Hybrid X-Ray/MRI and Non-Contact Mapping to Estimate Electrical Recruitability of Myocardial Tissue.

Porter, D.A., Atkinson, D., Scott, R., Clark, C.A. (2008). High-Resolution Diffusion Tensor Imaging Reveals Sub-Structure whithin Human Hippocampus in vivo.

Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Barker, G.J., ...Duncan, J.S. (2008). Imaging language pathways predicts postoperative naming deficits. Journal of Neurology, Neurosurgery and Psychiatry, 79 (3), 327-330. doi:10.1136/jnnp.2007.126078

Punwani, S., Robinson, C., Hawkes, D., Taylor, S.A., Halligan, S. (2008). Quantitative assessment of colonic movement between prone and supine patient positions during CTC.

Rhode, K., Ma, Y., Chandrasena, A., King, A., Gao, G., Chinchapatnam, P., ...Gill, J. (2008). Evaluation of the use of multimodality skin markers for the registration of pre-procedure cardiac MR images and intra-procedure x-ray fluoroscopy images for image guided cardiac electrophysiology procedures.

Schweiger, M., Dorn, O., Arridge, S.R. (2008). 3-D shape and contrast reconstruction in optical tomography with level sets.

Seunarine, K.K., Nedjati-Gilani, S., Hall, M.G., Cook, P.A., Alexander, D.C. (2008). Exploiting the fibre-orientation distribution for probabilistic tractography.

Shepherd, T., Alexander, D.C. (2008). Superviserd Methods for Perfect Segmentation in Medical Images.

Silberberg, Y.R., Pelling, A.E., Yakubov, G.E., Crum, W.R., Hawkes, D.J., Horton, M.A. (2008). Tracking displacements of intracellular organelles in response to nanomechanical forces.

Silberberg, Y.R., Pelling, A.E., Yakubov, G.E., Crum, W.R., Hawkes, D.J., Horton M, A. (2008). Mitochondrial displacements in response to nanomechanical forces. Journal of Molecular Recognition, 21 (1), 30-36. doi:10.1002/jmr.868

Silva, L.A.L., Campbell, J.A., Buxton, B.F. (2008). Folk Arguments, Numerical Taxonomy and Case-Based Reasoning.

Soloviev, V.Y., D'Andrea C, B.M., Valentini G, S., R B, C., R, A., S, R. (2008). Adjoint time domain method for fluorescent imaging in turbid media. Applied Optics, 47 (13), 2303-2311.

Soloviev, V.Y., D'Andrea, C., Brambilla, M., Valentini, G., Cubeddu, R., Schulz, R.B., Arridge, S.R. (2008). 3-D Fluorescence Imaging in Turbid Media by Using Time Gated Data Acquisition.

Sørensen, T.S., Atkinson, D., Boubertakh, R., Schaeffte, T., Hansen, M.S. (2008). Rapid non-Cartesian Parallel Imaging Reconstruction on Commodity Graphics Hardware.

Svenmarker, P., Axelsson, J., Schweiger, M., Zacharopoulos, A., Arridge, S.R., Andersson-Engels, S. (2008). Multispectral fluorescence enhanced difiuse optical tomography evaluated with weight matrix free algorithm.

Tarvainen, T., Vauhkonen, M., Arridge, S.R. (2008). Gauss-Newton reconstruction method for optical tomography using the finite-element solution of the radiative transfer equation. Journal of Quantitative Spectroscopy and Radiative Transfer, 109 (17-18), 2767-2778. doi:10.1016/j.jqsrt.2008.08.006

Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography. PIERS Online, 4 (6), 655-660. doi:10.2529/PIERS071219142458

Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography.

Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography.

Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2008). Modelling anisotropic viscoelasticity for real-time soft tissue simulation.

Thompson, S.A., Penney, G.P., Hawkes, D.J., Dasgupta, P. (2008). Bone segmentation using a CT based statistical shape model for image guidance in robot assisted prostatectomy.

Thompson, S., Penney, G., Buie, D., Dasgupta, P., Hawkes, D. (2008). Use of a CT statistical deformation model for multi-modal pelvic bone segmentation..

Thompson, S., Penney, G., Dasguipa, P., Hawkes, D. (2008). Image guidance in robot assisted radical prostatectomy. EUROPEAN UROLOGY SUPPLEMENTS, 7 (3), 104. doi:10.1016/S1569-9056(08)60134-7

Waechter, I., Barratt, D.C., Hawkes, D.J., Bredno, J., Weese, J. (2008). Quantifying blood flow division at bifurcations from rotational angiography.

Waechter, I., Bredno, J., Hermans, R., Barratt, D., Weese, J., Hawkes, D. (2008). Evaluation of model-based blood flow quantification from rotational angiography.

Waechter, I., Bredno, J., Hermans, R., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Model-based blood flow quantification from rotational angiography.. MEDICAL IMAGE ANALYSIS, 12 (5), 586-602. doi:10.1016/j.media.2008.06.003

Waechter, I., Bredno, J., Hermans, R., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Evaluation of model-based blood flow quantification from rotational angiography.

Waechter, I., Bredno, J., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Using flow information to support 3D vessel reconstruction from rotational angiography.. Medical physics, 35 (7Part1), 3302-3316. doi:10.1118/1.2938729

Waechter, I., Bredno, J., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Using flow information to support 3D vessel reconstruction from rotational angiography.. MEDICAL PHYSICS, 35 (7), 3302-3316. doi:10.1118/1.2938729

White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in free-breathing liver MRI.

White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in freebreathing.

White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in free-breathing liver MRI.

Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Thompson, P.J., Symms, M.R., ...Koepp, M.J. (2008). Tractography of the parahippocampal gyrus and material specific memory impairment in unilateral temporal lobe epilepsy. NeuroImage, 40 (4), 1755-1764. doi:10.1016/j.neuroimage.2007.12.046

Yogarajah, M., Yogarajah, M., Focke, N., Cercignani, M., Acheson, J., Bonelli, S.B., ...Koepp, M. (2008). TRACING MEYER'S LOOP: TEMPORAL LOBE RESECTION, VISUAL FIELD DEFICITS, AND TRACTOGRAPHY.

Zacharopoulos, A., Dorn, O., Arridge, S.R., Kolehmainen, V., Sikora, J. (2008). Reconstruction of simple geometric objects in 3D optical tomography using an adjoint technique and a boundary element method.

Zhuang, X., Hawkes, D.J., Crum, W.R., Boubertakh, R., Uribe, S., Atkinson, D., Batchelor, P. (2008). Robust registration between cardiac MRI images and atlas for segmentation propagation.

Zhuang, X., Hawkes, D.J., Crum, W.R., Boubertakh, R., Uribe, S., Atkinson, D., ...Hill, D.L.G. (2008). Robust registration between cardiac MRI images and atlas for segmentation propagation.

Zhuang, X., Rhode, K., Arridge, S., Razavi, R., Hill, D., Hawkes, D.J., Ourselin, S. (2008). An atlas-based segmentation propagation framework using locally affine registration – Application to automatic whole heart segmentation.

Zografos, V., Buxton, B.F. (2008). A Bayesian approach to 3D object recognition using linear combination of 2D views.

2007

Abascal, J.-.F.P.J., Arridge, S.R., Lionheart, W.R.B., Bayford, R.H., Holder, D.S. (2007). Validation of a finite-element solution for electrical impedance tomography in an anisotropic medium.

Abascal, J.-.F.P.J., Arridge, S.R., Lionheart, W.R.B., Bayford, R.H., Holder, D.S. (2007). Validation of a finite element solution for electrical impedance tomography in an anisotropic medium.

Alexander, D.C. (2007). Axon radius measurements in vivo from diffusion MRI: a feasibility study.

Alexander, D.C., Hall, M.G. (2007). Making the most of synthetic data: modelling vs simulation.

Alexander, D.C., Jiang, T., Westin, C.-.F. (2007). Special issue on computational diffusion MRI. IEEE TRANSACTIONS ON MEDICAL IMAGING, 26 (11), 1425-1427. doi:10.1109/TMI.2007.909944

Alexander, D.C., Jiang, T., Westin, C.F. (2007). Guest editorial special issue on computational diffusion MRI. IEEE Transactions on Medical Imaging, 26 (11), 1425-1426. doi:10.1109/TMI.2007.909944

Alexander, D.C., Jones, D.K. (2007). Limits on measuring axon diameters in vivo using diffusion MRI.

Atkinson, D., Batchelor, P.G., Clark, C. (2007). Track Ribbons - Visualising Structural Information in Diffusion Tensor Axial Asymmetry.

Batchelor, P., Atkinson, D., Schaeffter T, R., R. (2007). A fast Principal Direction Imaging method from Diffusion Weighted Images.

Blackall, J., McClelland, J., Tarte, S., Miguel, M., Uribe, S., Schaeffter, T., Hawkes, D. (2007). MR-based 4d models of respiratory motion variability for use in adaptive RT of the lung.

Cahill, N.D., Noble, J.A., Hawkes, D.J. (2007). Fourier methods for nonparametric image registration.

Cahill, N.D., Noble, J.A., Hawkes, D.J., Ray, L.A. (2007). Fast fluid registration with Dirichlet boundary conditions: A transform-based approach.

Camara, O., Scahill, R.I., Schnabel, J.A., Crum, W.R., Ridgway, G.R., Hill, D.L., Fox, N.C. (2007). Accuracy assessment of global and local atrophy measurement techniques with realistic simulated longitudinal data..

Chinchapatnam, P.P., Rhode, K.S., King, A., Gao, G., Ma, Y., Schaeffter, T., ...Arridge, S. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging.

Chinchapatnam, P., Rhode, K.S., King, A.P., Gao, G., Ma, Y., Schaeffter, T., ...Arridge, S.R. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging.

Cook, P.A., Boulby, P.A., Symms, M.R., Alexander, D.C. (2007). Optimal acquisition orders of diffusion-weighted MRI measurements. Journal of Magnetic Resonance Imaging, 25 (5), 1051-1058.

Corlu, A., Choe, R., Durduran, T., Rosen, M.A., Schweiger, M., Arridge, S.R., ...Yodh, A.G. (2007). Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans. Optics Express, 15 (11), 6696-6716.

Cox, B.T., Arridge, S.R., Beard, P.C. (2007). Gradient-based quantitative photoacoustic image reconstruction for molecular imaging.

Cox, B.T., Arridge, S.R., Beard, P.C. (2007). Photoacoustic tomography with a limited-aperture planar sensor and a reverberant cavity. Inverse Problems, 23 S95-S112. doi:10.1088/0266-5611/23/6/S08

Cox, B.T., Kara, S., Arridge, S.R., Beard, P.C. (2007). k-space propagation models for acoustically heterogeneous media: application to biomedical photoacoustics. Journal of the Acoustical Society of America, 121 (6), 3453-3464. doi:10.1121/1.2717409

Cox, B.T., S R Arridge, B., P, C. (2007). Gradient-Based Quantitative Photoacoustic Image Reconstruction for Molecular Imaging.

Crosier, M., Griffin, L.D. (2007). Zipf's law in image coding schemes.

Crosier, M., Griffin, L.D. (2007). Zipf's law distribution of local structure in natural images.

Crum, W.R., Camara, O., Hawkes, D.J. (2007). Methods for inverting dense displacement fields: Evaluation in brain image registration.

Crum, W.R., Camara, O., Hawkes, D.J. (2007). Methods for inverting dense displacement fields: evaluation in brain image registration.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2007, PT 1, PROCEEDINGS, 4791 900-+.

Douiri, A., Schweiger, M., Riley, J.A.A.S. (2007). Anisotropic diffusion regularization methods for diffuse optical tomography using edge prior information. Measurement Science & Technology, 18 (1), 87-95. doi:10.1088/0957-0233/18/1/011

Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2007). Anisotropic diffusion regularization methods for diffuse optical tomography using edge prior information.

Dyrby, T.B., Sogaard, L.V., Parker, G.J.M., Alexander, D.C., Lind, N.M., Baare, W.F.C., ...Paulson, O.B. (2007). Validation of in vitro probabilistic tractography. NeuroImage, 37 (4), 1267-1277. doi:10.1016/j.neuroimage.2007.06.022

Elaloufi, R., Arridge, S., Pierrat, R., Carminati, R. (2007). Light propagation in multilayered scattering media beyond the diffusive regime. APPLIED OPTICS, 46 (13), 2528-2539. doi:10.1364/AO.46.002528

Enfield, L.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Schweiger, M., Arridge, S.R., ...Hebden, J.C. (2007). Three-dimensional time-resolved optical mammography of the uncompressed breast. Applied Optics, 46 (17), 3628-3638.

Fauqueur, J., Brostow, G.J., Cipolla, R. (2007). Assisted Video Object Labeling By Joint Tracking of Regions and Keypoints..

Griffin, L.D. (2007). The Second Order Local-Image-Structure Solid. IEEE Transactions on Pattern Analysis and Machine Intelligence, 29 (8), 1355-1366. doi:10.1109/TPAMI.2007.1066

Griffin, L.D., Lillholm, M. (2007). Feature category systems for 2nd order local image structure induced by natural image statistics and otherwise.

Hall, M.G., Alexander, D.C. (2007). Covalidation of a Monte-Carlo and an analytical model of diffusion for synthetic diffusion-weighted MR data.

Hawkes, D.J., Penney, G.P., Atkinson, D., Barratt, D., Blackall, J., Carter, T., ...S, W. (2007). MOTION AND BIOMECHANICAL MODELS FOR IMAGE GUIDED INTERVENTIONS.

Hawkes, D., Nielsen, M. (2007). Untitled. MEDICAL IMAGE ANALYSIS, 11 (5), 415-416. doi:10.1016/j.media.2007.07.003

Hernandez, C., Vogiatzis, G., Brostow, G.J., Stenger, B., Cipolla, R. (2007). Non-rigid photometric stereo with colored lights.

Hipwell, J.H., Tanner, C., Crum, W.R., Schnabel, J.A., Hawkes, D.J. (2007). A new validation method for validation of x-ray mammogram registration algorithms using a projection model of breast x-ray compression. IEEE Transactions on Medical Imaging, 26 (7), 1190-1200.

Horesh, L., Bollhofer, M., Schweiger, M., Arridge, S.R., Holder, D.S. (2007). Novel Large-Scale 3D Electrical Impedance Tomography Modeling of the Human Head.

Horesh, L., Schweiger, M., Arridge, S.R., Holder, D.S. (2007). Large-Scale Non-Linear 3D Reconstruction Algorithms for Electrical Impedance Tomography of the Human Head.

Hulme, D.J., Hirsch, R., Buxton, B.F., Lotto, R.B. (2007). A new reduction from 3SAT to n-partite graphs.

Hu, M., Penney, G., Edwards, P., Figl, M., Hawkes, D. (2007). 3D reconstruction of internal organ surfaces for minimal invasive surgery.

Hu, M.X. (2007). 3D Reconstruction of Internal Organ Surfaces for Minimal Invasive Surgery.

Jiang, Q., Alexander, D.C., Ding, G.L., Zhang, Z.G., Pourabdollah, S., Nejad, D., ...Bagherebadian, H. (2007). White matter reorganization after stroke measured by Gaussian DTI, q-ball, and PAS MRI.

Johnson, M., Brostow, G.J., Shotton, J., Kwatra, V., Cipolla, R. (2007). Semantic photo synthesis.

Kashani, R., Baiter, J., Kessler, M., Hub, M., Dong, L., Zhang, L., ...Schnabel, J. (2007). Objective assessment of deformable image registration in radiotherapy - a multi-institution study.

Larsen, L., Griffin, L.D., Grassel, D., Witte, O.W., Axer, H. (2007). Polarized light imaging of white matter architecture. Microscopy Research and Technique, 70 (10), 851-863. doi:10.1002/jemt.20488

Lillholm, M., Griffin, L.D. (2007). Maximum likelihood metameres for local 2nd order image structure of natural images.

Loh, W.H., Laming, R.I., Atkinson, D., O'Reilly, J.J. (2007). Dispersion compensation in optical fibre transmission. WO09731435A1.

Mang, A., Camara, O., Brasil-Caseiras, G., Crum, W.R., Schnabel, J.A., Buzugl, T.M., ...Hawkes, D.J. (2007). Registration of RCBV and ADC maps with structural and physiological MR images in glioma patients: Study and validation.

Mang, A., Camara, O., Caseiras, G.B., Crum, W.R., Schnabel, J.A., Buzug, T.M., ...Hawkes, D.J. (2007). Image registration of structural and physiological MR images of abnormal anatomy.

Mang, A., Crum, W.R., Camara, O., Schnabel, J.A., Caseiras, G.B., Buzug, T.M., ...Hawkes, D.J. (2007). Modelling tumour growth patterns with non-rigid image registration.

McClelland, J., Blackall, J., Tarte, S., Hughes, S., Hawkes, D. (2007). Non-rigid registration based respiratory motion models of the lung using two parameters.

McClelland, J.R., Webb, S., McQuaid, D., Binnie, D.M., Hawkes, D.J. (2007). Tracking 'differential organ motion' with a 'breathing' multileaf collimator: magnitude of problem assessed using 4D CT data and a motion-compensation strategy. PHYSICS IN MEDICINE AND BIOLOGY, 52 (16), 4805-4826. doi:10.1088/0031-9155/52/16/007

Melbourne, A., Atkinson, D., White, M.J., Collins, M., Leach, M., Hawkes, D. (2007). Registration of dynamic contrast-enhanced MRI using a progressive principal component registration (PPCR). Physics in Medicine and Biology, 52 (17), 5147-5156. doi:10.1088/0031-9155/52/17/003

Melbourne, A., Atkinson, D., White, M.J., Hawkes, D.J., Collins, D., Leach, M. (2007). Contrast-enhancement simulation using principal components for registration of Dynamic Contrast-Enhanced MRI.

Melbourne, A., Atkinson, D., White, M.J., Hawkes, D.J., Collins, D., Leach, M. (2007). Using Registration to Quantify the Consistency of Whole Liver Position during Patient Breath-hold in Dynamic Contrast-Enhanced MRI.

Miyazaki, K., d'Arcy, J.A., Atkinson, D., Hawkes, D., Koh, D.-.M., Leach, M.O., Collins, D.J. (2007). Correcting Artifacts in High Temporal- and Spatial-Resolution Dynamic Abdominal Studies Using UNFOLD: A Potential Tool for Improving Perfusion Quantification of DCE-MR Investigations.

Nagy, Z., Weiskopf, N., Alexander, D.C., Deichmann, R. (2007). A method for improving the performance of gradient systems for diffusion-weighted MRI. Magnetic Resonance in Medicine, 58 (4), 763-768. doi:10.1002/mrm.21379

Nasrallah, A., Griffin, L.D. (2007). Gradient direction dependencies in natural images. Spatial Vision, 20 (3), 277-299.

Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2007). Sub-voxel reconstruction of fibre orientations.

Nedjati-Gilani, S., Parker, G.J., Hall, M.G., Alexander, D.C. (2007). .

Nunes, R.G., Hajnal, J.V., Atkinson, D., Larkman, D.J. (2007). Can Relative Coil-Subject Motion During Acquisition Improve Parallel Imaging?.

Penney, G.P., Edwards, P.J., Hipwell, J.H., Slomczykowski, M., Revie, I., Hawkes, D.J. (2007). Postoperative calculation of acetabular cup position using 2-D-3-D registration. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 54 (7), 1342-1348. doi:10.1109/TBME.2007.890737

Pourabdollah-Nejad, S., Bagher-Ebadian, H., Jiang, Q., Noll, D.C., Alexander, D.C., Ewing, J.R., ...Chopp, M. (2007). Information extraction from ischemic stroke MR images using independent component analysis technique.

Powell, H.W., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Wheeler-Kingshott, C.A.M., ...Duncan, J.S. (2007). Abnormalities of language networks in temporal lobe epilepsy. NeuroImage, 36 (1), 209-221. doi:10.1016/j.neuroimage.2007.02.028

Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Wheeler-Kingshott, C.A.M., Boulby, P.A., ...Duncan, J.S. (2007). Abnormalities of language networks in temporal lobe epilepsy.

Prince, S., Arridge, S. (2007). Estimating spatial and temporal factors in optical diffusion tomography.

Robson, S., Buxton, B.F., Clark, A. (2007). Close Range Colour Artefact Scanning.

Schulz, R.B., Schweiger, M., D'Andrea, C., Valentini, G., Peter, J. (2007). Applying time-dependent data for fluorescence tomography.

Schulz, R.B., Schweiger, M., D'Andrea, C., Valentini, G., Peter, J., Cubeddu, R., ...Semmler, W. (2007). Applying time-dependent data for fluorescence tomography.

Schweiger, M., Nissila, I., Boas, D.A., Arridge, S.R. (2007). Image reconstruction in optical tomography in the presence of coupling errors. APPLIED OPTICS, 46 (14), 2743-2756. doi:10.1364/AO.46.002743

Senanayake, C.R., Alexander, D.C. (2007). Colour transfer by feature based histogram registration.

Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K., Parker, G.J., Alexander, D.C. (2007). Validation of generalised PICo tractography using bootstrap measurements.

Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton K, P., G J, A., D, C. (2007). Exploiting Peak anisotropy for tracking through complex structures.

Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K.V., Parker, G.J.M., Alexander, D.C. (2007). Exploiting peak anisotropy for tracking through fanning structures.

Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K.V., Parker, G.J.M., Alexander, D.C. (2007). Exploiting peak anisotropy for tracking through complex structures.

Sharma, A., Enfield, L., Gibson, A.P., Everdell, N.L., Schweiger, M., Arridge, S., ...Sainsbury, R.S. (2007). Breast optical tomography: sensitivities and specificities for the detection of cancer..

Shepherd, T., Alexander, D.C. (2007). Supervised MS Lesion Segmentation.

Silva, L.A.L., Buxton, B.F., Campbell, J.A. (2007). Enhanced Case-Based Reasoning through Use of Argumentation and Numerical Taxonomy.

Soloviev, V.Y., McGinty, J., Tahir, K.B., Neil, M.A.A., Sardini, A., Hajnal, J.V., ...French, P.M.W. (2007). Fluorescence lifetime tomography of live cells expressing enhanced green fluorescent protein embedded in a scattering medium exhibiting background autofluorescence.. Optics Letters, 32 (14), 2034-2036. doi:10.1364/OL.32.002034

Soloviev, V.Y., Tahir, K.B., McGinty, J., Elson, D.S., Neil, M.A.A., French, P.M.W., Arridge, S.R. (2007). Fluorescence lifetime imaging by using time gated data acquisition.. Applied Optics, 46 (30), 7384-7391. doi:10.1364/AO.46.007384

Soloviev, V.Y., Tahir, K.B., McGinty, J., Elson, D.S., Neil, M., Sardinia, A., ...French, P.M.W. (2007). Fluorescence lifetime imaging through turbid media reconstructed in the Fourier domain using time-gated imaging data.

Soloviev, V.Y., Tahir, K.B., McGinty, J., Elson, D.S., Nel, M.A.A., Sardini, A., ...French, P.M.W. (2007). Fluorescence lifetime imaging through turbid media reconstructed in the Fourier domain using time-gated imaging data..

Tanner, C., Schnabel, J.A., Degenhard, A., Hall-Craggs, M.A., Usiskin, S.I., Leach, M.O., ...Hawkes, D.J. (2007). Quantitative evaluation of free-form deformation registration for dynamic contrast-enhanced MR mammography.. Medical Physics, 34 (4), 1221-1233.

Thomaz, C.E., Boardman, J.P., Counsell, S., Hill, D.L.G., Hajnal, J.V., Edwards, A.D., ...Rueckert, D. (2007). A multivariate statistical analysis of the developing human brain in preterm infants. Image and Vision Computing, 25 (6), 981-994. doi:10.1016/j.imavis.2006.07.011

Uribe, S., Muthurangu, V., Boubertakh, R., Schaeffter, T., Razavi, R., Hill, D.L.G., Hansen, M.S. (2007). Whole-heart cine MRI using real-time respiratory self-gating.. MAGNETIC RESONANCE IN MEDICINE, 57 (3), 606-613. doi:10.1002/mrm.21156

Waechter, I., Bredno, J., Barratt, D.C., Weese, J., Hawkes, D.J. (2007). Quantification of blood flow from rotational angiography.

Waechter, I., Bredno, J., Barratt, D., Weese, J., Hawkes, D. (2007). Quantification of Blood Flow from Rotational Angiography.

Webb, S., McClelland, J., Hawkes, D., Binnie, D. (2007). Tracking "Differential Organ Motion" with a "Breathing" multileaf collimator: Magnitude of problem assessed using 4D CT data and a motion-compensation strategy.

White, M.J., Atkinson, D., Batchelor, P.G., Crum, W.R., Uribe, S., Schaeffter, T., ...Hawkes, D.J. (2007). Reducing Artefacts by Inverting the Effects of Non-Rigid Motion During a Free-Breathing Liver Scan.

White, M.J., Atkinson, D., Crum, W.R., Uribe, S., Schaeffler, T., Collins, D., ...Hawkes, D.J. (2007). Reducing artefacts by inverting the effects of non-rigid motion during a free-breathing liver scan.

Wright, S., Schweiger, M., Arridge, S.R. (2007). Reconstruction in optical tomography using the P-N approximations.

Xie, Y., Griffin, L.D. (2007). A 'portholes' experiment for probing perception of small patches of natural images.

Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P., ...Duncan, J.S. (2007). Reorganisation of medial temporal lobe connections in unilateral temporal lobe epilepsy.

Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P., ...Duncan, J.S. (2007). Atrophy of medial temporal lobe connections in unilateral temporal lobe epilepsy: A tractography based study.

Yogarajah, M., Powell, R., Parker, G., Alexander, D., Symms, M., Boulby, P., ...Koepp, M. (2007). Tractography of the parahippocampal gyrus and material specific memory impairment in unilateral temporal lobe epilepsy.

2006

Ahmad, S., Tarte, S., Withers, D., Hawkes, D., Blackall, J., Landau, D., ...Adams, M. (2006). Comparison of patient-specific and generic internal target volume (ITV) margins for planning radical radiotherapy in lymph-node positive non-small cell lung cancer (NSCLC).

Alexander, D.C. (2006). An introduction to computational diffusion MRI: the diffusion tensor and beyond. In Weichert, J., Hagen, H. (Eds.), Visualization and image processing of tensor fields. (pp. 83-106). Berlin / Heidelberg: Springer.

Arridge, S., Dorn, O., Kaipio, J.P., Kolehmainen, V., Schweiger, M., Tarvainen, T., ...Zacharopoulos, A. (2006). Reconstruction of Subdomain Boundaries of Piecewise Constant Coefficients of the Radiative Transport Equation from Optical Tomography Data. Inverse Problems, 22 (6), 2175-2`98.

Arridge, S.R., Kaipio, J.P., Kolehmainen, V., Schweiger, M., Somersalo, E., Tarvainen, T., Vauhkonen, M. (2006). Approximation errors and model reduction with an application in optical diffusion tomography. Inverse Problems, 22 175-195. doi:10.1088/0266-5611/22/1/010

Atkinson, D. (2006). Special Applications of Parallel Imaging. In Schoenberg, S.O., Dietrich, O., Reiser, M.F. (Eds.), Parallel imaging in clinical MR applications. (pp. 63-70). Springer.

Atkinson, D. (2006). Incoherent Artefact Correction using PPI. NMR in Biomedicine, 19 (3), 362-367. doi:10.1002/nbm.1045

Atkinson, D., Counsell, S., Hajnal, J., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2006). Navigated Multi-Shot EPI Diffusion Imaging of the Spine.

Atkinson, D., Counsell, S., Hajnal, J., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2006). Navigated Multi-Shot EPI Diffusion Imaging of the Spine.

Atkinson, D., Counsell, S., Hajnal, J.V., Batchelor, P.G., Hill, D.L.G., Larkman, D.J. (2006). Nonlinear phase correction of navigated multi-coil diffusion images. Magnetic Resonance in Medicine, 56 (5), 1135-1139. doi:10.1002/mrm.21046

Austin, T., Gibson, A.P., Everdell, N.L., Schweiger, M., Arridge, S.R., Meek, J.H., ...Hebden, J.C. (2006). Optical imaging of the neonatal brain.

Austin, T., Hebden, J.C., Gibson, A.P., Branco, G., Yusof, R., Arridge, S.R., ...Wyatt, J.S. (2006). Three-dimensional optical imaging of blood volume and oxygenation in the preterm brain. Neuroimage, 31 (4), 1426-1433.

BAI, Y., Alexander, D. (2006). Correcting for Motion between Acquisitions in Diffusion MR Imaging.

Bai, Y., Cook, P.A., Zhang, H., Alexander, D.C. (2006). Motion Correction in Diffusion Magnetic Resonance.

Barratt, D.C., Penney, G.P., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2006). Self-Calibrating 3D-Ultrasound-Based Bone Registration for Minimally Invasive Orthopaedic Surgery. IEEE Transactions on Medical Imaging, 25 (3), 312-323. doi:10.1109/TMI.2005.862736

Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Ultrasound-based registration for minimally-invasive orthopaedic surgery.

Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Recent Developments in Ultrasound-based Bone Registration.

Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Recent Developments in Ultrasound-based Bone Registration.

Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Advances in Fiber Tracking Quantification.

Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Advances in Fiber Tracking Quantification.

Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Higher Order Tensor Analysis and Higher Order SVD for Diffusion Tensor Analysis.

Batchelor, P.G., Atkinson, D., Larkman, D.J., Hajnal, J., Hill, D.L.G., Irrarazaval, P., Hansen, M. (2006). A Sparse Matrix Formalism for Non-Rigid Motion Correction..

Batchelor, P.G., Atkinson, D., Larkman, D.J., Hajnal, J.V. (2006). Corrections and reconstruction via conjugate gradientmethods, comparison of matrix and functional methods.

Batchelor, P.G., Calamante, F., Tournier, J.-.D., Atkinson, D., Hill, D.L., Connelly, A. (2006). Quantification of the shape of fiber tracts. MAGN RESON MED, 55 (4), 894-903. doi:10.1002/mrm.20858

Blackall, J., Ahmad, S., Miquel, M., McClelland, J., Landau, D., Hawkes, D. (2006). MRI-Based Measurements of Respiratory Motion Variability and Assessment of Imaging Strategies for Radiotherapy Planning. Physics in Medicine and Biology, 51 (17), 4147-4169.

Boyes, R.G., Rueckert, D., Aljabar, P., Whitwell, J., Schott, J.M., Hill, D.L., Fox, N.C. (2006). Cerebral atrophy measurements using Jacobian integration: Comparison with the boundary shift integral. NeuroImage, 32 (1), 159-169.

Brostow, G.J., Cipolla, R. (2006). Unsupervised Bayesian Detection of Independent Motion in Crowds..

Camara, O., Schweiger, M., Scahill, R.I., Crum, W.R., Sneller, B.I., Schnabel, J.A., ...Fox, N.C. (2006). Phenomenological model of diffuse global and regional atrophy using finite-element methods. IEEE Transactions on Medical Imaging, 25 (11), 1417-1430. doi:10.1109/TMI.2006.880588

Camara-Rey, O., Schweiger, M., Scahill, R.I., Crum, W.R., Schnabel, J.A., Hill, D.L.G., Fox, N.C. (2006). Simulation of local and global atrophy in Alzheimer's disease studies.

Camara-Rey, O., Schweiger, M., Scahill, R.I., Crum, W.R., Schnabell, J.A., Hill, D.L.G., Fox, N.C. (2006). Simulation of local and global atrophy in Alzheimer's disease studies.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2006, PT 2, 4191 937-945.

Camara-Rey, O., Sneller, B.I., Ridgway, G.R., Garde, E., Fox, N.C., Hill, D.L.G. (2006). Simulation of acquisition artefacts in MR scans: effects on automatic measures of brain atrophy..

Carter, T.J., Tanner, C., Crum, W.R., Hawkes, D.J. (2006). Prone-Supine Breast MR Image Registration for Image-Guided Surgery.

Carter, T.J., Tanner, C.C., W R, B.-.N., N, H., D, J. (2006). A Framework for Image-Guided Breast Surgery.

Cercignani, M., Alexander, D.C. (2006). Optimal sampling for quantitative magnetization transfer.

Cercignani, M., Alexander, D.C. (2006). Optimal acquisition schemes for in vivo quantitative magnetization transfer MRI.. Magnetic Resonance in Medicine, 56 (4), 803-810. doi:10.1002/mrm.21003

Chandler, A.G., Pinder, R.J., Netsch, T., Schnabel, J.A., Hawkes, D.J., Hill, D.L.G., ......I.E.E.E. (2006). Correction of misaligned slices in multi-slice MR cardiac examinations by using slice-to-volume registration.

Chandler, A.G., Pinder, R.J., Netsch, T., Schnabel, J.A., Hawkes, D.J., Hill, D.L.G., Razavi, R. (2006). Correction of misaligned slices in multi-slice MR cardiac examinations by using slice-to-volume registration.

Corlu, A., Durduran, T., Choe, R., Lee, K., Schweiger, M., Arridge, S.R., Yodh, A.G. (2006). White light diffuse optical tomography and validation of optimum wavelengths for CW DOT.

Corlu, A., Durduran, T., Choe, R., Lee, K., Schweiger, M., Arridge, S.R., Yodh, A.G. (2006). White light diffuse optical tomography and validation of optimum wavelengths for CW DOT.

Cox, B.T., Arridge, S.R., Beard, P.C. (2006). Quantitative photoacoustic image reconstruction for molecular imaging.

Cox, B.T., Arridge, S.R., Beard, P.C. (2006). Quantitative photoacoustic image reconstruction for molecular imaging.

Cox, B.T., Arridge, S.R., Kostli, K.P., Beard, P.C. (2006). Two-dimensional quantitative photoacoustic image reconstruction of absorption distributions in scattering media by use of a simple iterative method. APPLIED OPTICS, 45 (8), 1866-1875. doi:10.1364/AO.45.001866

Cox, B.T., Arridge, S.R., Kostli, K.P., Beard, P.C. (2006). 2D Quantitative photoacoustic image reconstruction of absorption distributions in scattering media using a simple recursive method. Applied Optics, 45 (8), 1866-1875. doi:10.1364/AO.45.001866

Crum, W.R., Camara, O., Hill, D.L.G. (2006). Generalised Overlap Measures for Evaluation and Validation in Medical Image Analysis. IEEE Transactions on Medical Imaging, 25 (11), 1451-1461. doi:10.1109/TMI.2006.880587

Diamond, S.G., Huppert, T.J., Kolehmainen, V., Franceschini, M.A., Kaipio, J.P., Arridge, S.R., Boas, D.A. (2006). Dynamic physiological modeling for functional diffuse optical tomography. NEUROIMAGE, 30 (1), 88-101. doi:10.1016/j.neuroimage.2005.09.016

Dyrby, T.B., Vejby, S.L., Parker, G.J.M., Alexander, D.C., Lind, N.M., Paulson, O.B., Jelsing, J. (2006). Validation of multi-fibre probabilistic tractography of corticothalamic projections in the Gottingen minipig brain.

Ebbels, T.M., Buxton, B.F., Jones, D.T. (2006). springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an 'information landscape. Bioinformatics, 22 (14), e99-e107.

Enfield, L.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Hebden, J.C., Arridge, S.R., ...Keshtgar, M.R.S. (2006). Three-dimensional time-resolved optical mammography of the uncompressed breast.

Enfield, L.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Hebden, J.C., Arridge, S.R., ...Keshtgar, M.R.S. (2006). Three-dimensional time-resolved optical mammography of the uncompressed breast. Optics InfoBase Conference Papers,

Geddes, J., Mackay, C., Lloyd, S., Simpson, A., Power, D., Russell, D., ...Fletcher, J. (2006). The Challenges of developing a collaborative data and compute grid for Neurosciences. 19TH IEEE INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS, PROCEEDINGS, 81-+. doi:10.1109/CBMS.2006.156

Geddes, J., Mackay, C., Lloyd, S., Simpson, A., Power, D., Russell, D., ...Fox, N. (2006). Designing for e-Health: Recurring Scenarios in Developing Grid-based Medical Imaging Systems. CHALLENGES AND OPPORTUNITIES OF HEALTHGRIDS, 120 336-+.

Gee, J.C., Alexander, D.C. (2006). Diffusion tensor image registration. In Weichert, J., Hagen, H. (Eds.), Visualization and processing of tensor fields. (pp. 327-344). Springer.

Gibson, A.P., Austin, T., Everdell, N.L., Schweiger, M., Arridge, S.R., Meek, J.H., ...Hebden, J.C. (2006). Three-dimensional whole-head optical tomography of passive motor evoked responses in the neonate. NeuroImage, 30 (2), 521-528. doi:10.1016/j.neuroimage.2005.08.059

Gibson, A.P., Everdell, N.L., Hebden, J.C., Austin, T., Wong, F., Meek, J.H., ...Arridge, S.R. (2006). Anatomically constrained optical tomography of the neonatal brain.

Griffin, L.D. (2006). Natural images have a tendency towards purely 1-D local variation.

Griffin, L.D. (2006). Optimality of the basic colour categories for classification. Journal of the Royal Society Interface, 3 (6), 71-85. doi:10.1098/rsif.2005.0076

Griffin, L.D., Lillholm, M. (2006). Hypotheses for image features, icons and textons. International Journal of Computer Vision, 71 (3), 213-230. doi:10.1007/s11263-006-6355-9

Hall, M.G., Alexander, D.C. (2006). A simulation framework for diffusion MRI.

Hall, M.G., Alexander, D.C. (2006). Finite pulse widths improve fibre orientation estimates in diffusion tensor MRI.

Haroon, H.A., Lambon-Ralph, M.A., Watson, Y., Ciccarelli, O., Wheeler-Kingshott, C.A.M., Alexander, D.C., ...Parker, G.J.M. (2006). Auditory-language networks involving the superior temporal gyrus: patterns of connection and lateralization.

Hegde, S., Miquel, M.E., Boubertakh, R., Gilderdale, D., Muthurangu, V., Keevil, S.F., ...Razavi, R.S. (2006). Interactive MR imaging and tracking of catheters with multiple tuned fiducial markers.. JOURNAL OF VASCULAR AND INTERVENTIONAL RADIOLOGY, 17 (7), 1175-1179. doi:10.1097/01.RVI.0000228466.09982.8B

Hipwell, J.H., Tanner, C., Crum, W.R., Hawkes, D.J. (2006). X-ray mammogram registration: A novel validation method.

Hipwell, J.H., Tanner, C., Crum, W.R., Hawkes, D.J. (2006). A new validation method for establishing correspondence between pairs of X-ray mammograms. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2006 doi:10.1109/CVPRW.2006.143

Ioannides, A., Johnston, A., Griffin, L.D. (2006). White's effect as a consequence of reconstruction from a biologically realistic brightness code.

Ioannides, A., Johnston, A.J., Griffin, L.D. (2006). Simultaneous contrast and white's effect as a consequence of a biologically plausible model of brightness filling-in [Abstract].

Johnson, M., Brostow, G.J., Shotton, J., Arandjelovic, O., Kwatra, V., Cipolla, R. (2006). Semantic photo synthesis. COMPUTER GRAPHICS FORUM, 25 (3), 407-413. doi:10.1111/j.1467-8659.2006.00960.x

Kolehmainen, V., Arridge, S.R., Kaipio, J.P., Schweiger, M., Somersalo, E., Tarvainen, T., Vauhkonen, M. (2006). Approximation errors and model reduction in optical tomography.

Kolehmainen, V., Arridge, S.R., Kaipio, J.P., Schweiger, M., Somersalo, E., Tarvainen, T., Vauhkonen, M. (2006). Approximation errors and model reduction in optical tomography.

Larkman, D.J., Batchelor, P.G., Atkinson, D., Rueckert, D., Hajnal, J.V. (2006). Beyond the g-factor limit in SENSE using joint histogram entropy. Magnetic Resonance in Medicine, 55 (1), 153-160. doi:10.1002/mrm.20752

Leung, K.K., Holden, M., Saeed, N., Brooks, K.J., Buckton, J.B., Williams, A.A., ...Zhao, Y. (2006). Automatic quantification of changes in bone in serial MR images of joints. IEEE Transactions on Medical Imaging,

Leung, K.K., Saeed, N., Campbell, S.P., Changani, K., Hill, A.D.L.G. (2006). Spatio-temporal segmentation of rheumatoid arthritis lesions in serial MR images of joints.

Leung, T.S., Tachtsidis, I., Elwell, C.E., Delpy, D.T., Tisdall, M., Smith, M., Arridge, S. (2006). Modelling of indocyanine green bolus with a finite element model of the adult human head and the Fick principle.

Leung, T.S., Tachtsidis, I., Elwell, C.E., Delpy, D.T., Tisdall, M., Smith, M., Arridge, S.R. (2006). Modelling of indocyanine green boluses with a finite element model of the adult human head and the Fick principle.

Lillholm, M., Griffin, L.D. (2006). A category system on the shape index descriptor of local image structure induced by natural image statistics.

Maheswaran, S., Barjat, H., Bate, S., Hartkens, T., Hill, D.L.G., James, M.F., ...Rueckert, D. (2006). Deformation based morphometry analysis of serial magnetic resonance images of mouse brains.

McClelland, J., Blackall, J., Tarte, S., Chandler, A., Hughes, S., Ahmad, S., ...Hawkes, D. (2006). A Continuous 4D Motion Model from Multiple Respiratory Cycles for use in Lung Radiotherapy. Medical Physics, 33 (9), 3348-3358. doi:10.1118/1.2222079

McClelland, J., Hughes, S., Ahmad, S., Chandler, A., Blackall, J., Tarte, S., ...Hawkes, D. (2006). Comparing breathhold and free breathing CT derived motion models for predicting respiratory motion of lung cancer and lymph nodes.

Miyazaki, K., Walker-Samual, S., Knowles, B.R., Taylor, N.J., Padhani, A.R., Wallace, T., ...Atkinson, D. (2006). Parametric DCE-MRI HPI Maps - A Qualitative and Quantitative Analysis in Phase I Clinical Trial Patients with Liver Metastases.

Nasrallah, A., Griffin, L.D. (2006). Multi-local dependencies of gradient directions in natural images.

Nasrallah, A.J., Griffin, L.D. (2006). Synergy in the multi-local statistics of gradient directions in images.

Nasrallah, A.J., Griffin, L.D. (2006). Multi-local statistics of gradients.

Nedjati-Gilani, S., Parker, G.J.M., Alexander, D.C. (2006). Mapping the number of fibre orientations per voxel in diffusion MRI.

Newton, J.M., Ward, N.S., Parker, G.J., Deichmann, R., Alexander, D.C., Friston, K.J., Frackowiak, R.S.J. (2006). Non-invasive mapping of corticofugal fibres from multiple motor areas - relevance to stroke recovery.. Brain, 129 (7), 1844-1858.

Papastavrou, Y., Hutton, B., Hawkes, D. (2006). Non-rigid registration of combned PET-CT jhead and neck images to place the information within a common anatomical framework..

Penney, G.P., Barratt, B.C., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2006). Cadaver Validation of intensity-based ultrasound to CT registration. Medical Image Analysis, 10 (3), 385-395. doi:10.1016/j.media.2006.01.003

Pineda, A.R., Schweiger, M., Arridge, S.R., Barrett, H.H. (2006). Information content of data types in time-domain optical tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 23 (12), 2989-2996. doi:10.1364/JOSAA.23.002989

Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Wheeler-Kingshott, C.A.M., ...Duncan, J.S. (2006). Hemispheric asymmetries in language-related pathways: A combined functional MPI and tractography study. NeuroImage, 32 (1), 388-399.

Powell, R., Parker, G., Alexander, D., Symms, M., Barker, G., Koepp, M., Duncan, J. (2006). Diffuse language pathway abnormalities in temporal lobe epilepsy.

Prieto, C., Batchelor, P., Mir, R., Hill, D.L.G., Guarini, M., Irarrazaval, P. (2006). Reconstruction of Under-Sampled Dynamic Images by Modeling the Motion of Object Elements.

Richardson, C.E., Enfield, L., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., ...Douek, M. (2006). Imaging breast cancer non-invasively using three-dimensional optical tomography.

Richardson, C.E., Enfield, L., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., ...Douek, M. (2006). Non-invasive three dimensional optical mammography.

Richardson, C.E., Enfield, L., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., ...Douek, M. (2006). Three-dimensional optical imaging of the breast.

Richardson, C.E., Enfield, L., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., ...Douek, M. (2006). Non-invasive optical imaging in patients with breast cancer.

Schweiger, M., Arridge, S.R., Dorn, O., Zacharopoulos, A., Kolehmainen, V. (2006). Reconstructing absorption and diffusion shape profiles in optical tomography by a level set technique. OPTICS LETTERS, 31 (4), 471-473. doi:10.1364/OL.31.000471

Sermesant, M., Moireau, P., Camara, O., Sainte-Marie, J., Andriantsimiavona, R., Cimrman, R., ...Razavi, R. (2006). Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties.

Seunarine, K.K., Alexander, D.C. (2006). Linear Persistent Angular Structure MRI and non-linear Spherical Deconvolution for Diffusion MRI.

Seunarine, K.K., Cook, P.A., Embleton, K.V., Parker, G.J.M., Alexander, D.C. (2006). A general framework for multiple-fibre PICo tractography.

Shen, A.R., Brostow, G.J., Cipolla, R. (2006). Toward Automatic Bloodspatter Analysis in Crime Scenes.

Shepherd, T., Alexander, D.C. (2006). A support vector machine for 3D texture-based classification of bone in CT images.

Sikora, J., Zacharopoulos, A., Douiri, A., Schweiger, M., Horesh, L., Arridge, S.R., Ripoll, J. (2006). Diffuse photon propagation in multilayered Geometries. Physics in Medicine and Biology, 51 497-516.

Sneller, B., Garde, E., Atkinson, D., Batchelor, P., Fox, N.C., Hill, D.L.G. (2006). FLOW ARTIFACTS IN MR IMAGING FOR ALZHEIMER'S DETECTION AND PROGRESSION.

Tanner, C., Carter, T.J., Hawkes, D.J. (2006). 3D Rezoning for Finite Element Modelling of Large Breast Deformations.

Tanner, C., Khazen, M., Kessar, P., Leach, M.O., Hawkes, D.J. (2006). Does Registration Improve the Performance of a Computer Aided Diagnosis System for Dynamic Contrast-Enhanced MR Mammography?.

Tanner, C., Schnabel, J.A., Leach, M.O., Hose, D.R., Hill, D.L.G., Hawkes, D.J. (2006). Factors Influencing the Accuracy of Biomechanical Breast Models.. Medical Physics, 33 (6), 1758-1769.

Tarte, S., McClelland, J., Hughes, S., Blackall, J., Landau, D., Hawkes, D. (2006). A non-contact method for the acquisition of breathing signals that enable distinction between abdominal and thoracic breathing.

Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Heiskala, J., Arridge, S.R. (2006). Modeling Photon Migration in Tissues with the Coupled Radiative Transfer Equation and Diffusion Approximation.

Thomaz, C.E., Boardman, J.P., Counsell, S., Hill, D.L.G., Hajnal, J.V., Edwards, A.D., ...Rueckert, D. (2006). Whole brain morphometric analysis of changes associated with pre-term birth.

Vyas, N., Schleyer, P., Hill, D., Marsden, P. (2006). Modeling and correcting for respiratory motion in PET.

Vyas, N.S., Schleyer, P., Hill, D.L.G., Marsden, P.K. (2006). Modelling and correcting for respiratory motion in PET. EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING, 33 S147.

Waechter, I., Bredno, J., Weese, J., Hawkes, D. (2006). Using flow information to support 3D vessel reconstruction from rotational angiography.

White, M.J., Atkinson, D., Collins, D., Leach, M.O., Hawkes, D.J. (2006). Parameterized modelling of liver deformation during free.

Zacharopoulos, A., Arridge, S. (2006). 3D shape reconstruction in Optical Tomography using spherical harmonics and BEM. JOURNAL OF ELECTROMAGNETIC WAVES AND APPLICATIONS, 20 (13), 1827-1836. doi:10.1163/156939306779292165

Zacharopoulos, A., Arridge, S., Dorn, O., Kolehmainen, V., Sikora, J. (2006). 3D shape reconstruction in Optical Tomography using spherical harmonics and BEM.

Zacharopoulos, A., Arridge, S.R., Dorn, O., Kolehmainen, V., Sikora, J. (2006). Three dimensional reconstruction of shape and piecewise constant region values for Optical Tomography using spherical harmonic parameterisation and a Boundary Element Method. Inverse Problems, 22 (5), 1509-1532.

2005

(2005). Validation of PET imaging by alignment to histology slices.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 8 (Pt 2), 968-975.

Ahmad, S., McClelland, J., Chandler, A., Blackall, J., Hughes, S., Hawkes, D. (2005). Movement of tumour and mediastinal lymph nodes with respiration in patients with non small cell lung cancer (NSCLC).

Ahmad, S., McClelland, J., Chandler, A., Blackall, J., Landau, D., Hawkes, D. (2005). The implementation of 4D CT using a novel respiratory motion modelling technique to aid radiotherapy planning in patients with non-small cell lung cancer.

Alexander, D.C. (2005). Monte-Carlo studies of multiple-fibre reconstruction algorithms for diffusion MRI.

Alexander, D.C. (2005). Multiple fibre reconstruction algorithms for diffusion MRI. Annals of the New York Academy of Sciences, 1046 113-133.

Alexander, D.C. (2005). Maximum entropy spherical deconvolution for diffusion MRI.

Alexander, D.C., Barker, G.J. (2005). Optimal imaging parameters for fibre-orientation estimation in diffusion MRI.

Alexander, D.C., Barker, G.J. (2005). Optimal imaging parameters for fibre-orientation estimation in diffusion MRI. NeuroImage, 27 357-367.

Atkinson, D., Batchelor, P.G., Hill, D.L.G., Larkman, D.J., Hajnal, J.V. (2005). LSQR reconstruction of multi-shot diffusion weighted images incorporating non-linear phase corrections, coil sensitivities and data weighting.

Atkinson, D., Hajnal, J.V., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2005). Multiple Coils for Regridding Multi-Shot EPI Diffusion Data.

Austin, T., Gibson, A.P., Everdell, N.L., Herden, J.C., Schweiger, M., Arridge, S.R., ...Wyatt, J.S. (2005). Three dimensional optical imaging of neonatal brain activation.

Austin, T., Hebden, J.C., Gibson, A.P., Yusof, R.M., Arridge, S.R., Meek, J.H., ...Wyatt, J.S. (2005). Imaging 3D changes in blood volume and oxygenation in response to functional activation.

Aylward, S.R., Cleary, K.R., Hawkes, D.J. (2005). Intraoperative image processing for surgical guidance. IEEE TRANS MED IMAGING, 24 (278-0062 (Print), 11), 1401-1404.

Barratt, D.C., Penney, G.P., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2005). Self-calibrating ultrasound-to-CT bone registration.

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Larkman, D., Hajnal, J., Irrarazaval, P. (2005). A Matrix Framework for General Non-Affine Motion Correction in Multishot Acquisitions.

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Larkman, D., Hajnal, J., Irrarazaval, P. (2005). A Matrix Framework for General Non-Affine Motion Correction in Multishot Acquisitions.

Batchelor, P.G., Atkinson, D., Irarrazaval, P., Hill, D.L.G., Hajnal, J.V., Larkman, D.J. (2005). Matrix description of general motion correction applied to multishot images. Magnetic Resonance in Medicine, 54 (5), 1273-1280. doi:10.1002/mrm.20656

Batchelor, P.G., Atkinson, D., Irarrazaval, P., Larkman, D., Hajnal, J., Hill, D.L.G. (2005). Non-rigid motion correction applied to multishot images.

Batchelor, P.G., Calamante, F., Moakher, M., Atkinson, D., Connelly, A., Hill, D.L.G. (2005). A Rigorous Method for Calculus on Diffusion Tensors: Taking into Account Positivity of Eigenvalues.

Becker, W., Bergmann, A., Gibson, A.P., Everdell, N., Jennions, D., Schweiger, M., ...Hebden, J.C. (2005). Multi-dimensional time-correlated single photon counting applied to diffuse optical tomography. Proceedings of SPIE, 34-42.

Blackall, J.M., Penney, G.P., King, A.P., Hawkes, D.J. (2005). Alignment of sparse freehand 3-D ultrasound with preoperative images of the liver using models of respiratory motion and deformation. IEEE TRANS MED IMAGING, 24 (11), 1405-1416. doi:10.1109/TMI.2005.856751

Blackall, J.M., Penney, G.P., King, A.P., Hawkes, D.J. (2005). Alignment of Sparse Freehand 3D Ultrasound with Preoperative Images of the Liver and an Interventional Plan Using Models of Respiratory Motion and Deformation. IEEE Transactions on Medical Imaging, 24 1405-1416.

Buxton, B.F., Zografos, V. (2005). Flexible template and model matching using image intensity.

Campbell, J.L., Griffin, L.D.S., J A B, M., F, A. (2005). The effect of abnormal colour vision on the ability to identify and outline coloured clinical signs and to count stained bacilli in sputum. Clinical and Experimental Optometry, 88 (6), 376-381.

Carter, T.J., Sermesant, M., Cash, D.M., Barratt, D.C., Tanner, C., Hawkes, D.J. (2005). Application of soft tissue modelling to image-guided surgery. Medical Engineering and Physics, 27 (350-4533 (Print), 10), 893-909.

Choe, R., Corlu, A., Lee, K., Durduran, T., Konecky, S.D., Grosicka-Koptyra, M., ...DeMichele, A. (2005). Diffuse optical tomography of breast cancer during neoadjuvant chemotherapy: A case study with comparison to MRI.. Medical Physics, 32 (4), 1128-1139.

Cook, P.A., Bai, Y., Hall, M.G., Nedjati-Gilani, S., Seunarine, K.K., Alexander, D.C. (2005). Camino: diffusion MRI reconstruction and processing.

Cook, P.A., Boulby, P.A., Symms, M.R., Alexander, D.C. (2005). Optimal acquisition order of diffusion-weighted measurements on a sphere.

Cook, P.A., Boulby, P.A., Symms, M.R., Alexander, D.C. (2005). Optimal acquisition order of diffusion-weighted measurements on a sphere.

Cook, P.A., Zhang, H., Avants, B.B., Yushkevich, P.A., Alexander, D.C., Gee, J.C. (2005). An automated approach to connectivity-based partitions of brain structures. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2005. (pp. 164-171). .

Corlu, A., Choe, R., Durduran, T., Lee, K., Schweiger, M., Arridge, S.R., ...Yodh, A.G. (2005). Diffuse optical tomography with spectral constraints and wavelength optimization. Applied Optics, 44 (11), 2082-2093. doi:10.1364/AO.44.002082

Corney, D.P.A., Byrne, E.L., Buxton, B.F., Jones, D.T. (2005). A Logical Framework for Template Creation and Information Extraction.

Cox, B.T., Arridge, S.R., Koestli, K.P., Beard, P.C. (2005). Quantitative photoacoustic imaging: fitting a model of light transport to the initial pressure distribution.

Crum, W.R., Camara, O., Rueckert, D., Bhatia, K.K., Jenkinson, M., Hill, D.L.G. (2005). Generalised overlap measures for assessment of pairwise and groupwise image registration and segmentation.

Crum, W.R., Camara, O., Rueckert, D., Bhatia, K.K., Jenkinson, M., Hill, D.L.G. (2005). Generalised overlap measures for assessment of pairwise and groupwise image registration and segmentation.

Crum, W.R., Tanner, C., Hawkes, D.J. (2005). Anisotropic multi-scale fluid registration: evaluation in magnetic resonance breast imaging. Physics in Medicine and Biology, 50 (21), 5153-5174. doi:10.1088/0031-9155/50/21/014

Curran, K.M., Alexander, D.C. (2005). Comparison of similarity measures for driving diffusion tensor registration.

Diamond, S.G., Huppert, T.J., Kolehmainen, V., Franceschini, M.A., Kaipio, J.P., Arridge, S.R., Boas, D.A. (2005). Physiological system identification with the Kalman filter in diffuse optical tomography.

Diamond, S.G., Huppert, T.J., Kolehmainen, V., Franceschini, M.A., Kaipio, J.P., Arridge, S.R., Boas, D.A. (2005). Physiological system identification with the Kalman filter in diffuse optical tomography.

Dias, M.B., Buxton, B.F. (2005). Implicit, view invariant, linear flexible shape modelling. Pattern Recognition Letters, 26 (4), 433-447. doi:10.1016/j.patrec.2004.08.006

Dierkes, T., Grosenick, D., Moesta, K.T., Möller, M., Schlag, P.M., Rinneberg, H., Arridge, S.R. (2005). Reconstruction of optical properties of phantom and breast lesion in vivo from paraxial scanning data. Physics in Medicine and Biology, 50 2519-2542.

Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2005). An adaptive diffusion regularization method of inverse problem for Diffuse Optical Tomography.

Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2005). Adaptive diffusion regularization method of inverse problem for Diffuse Optical Tomography.

Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2005). An adaptive diffusion regularization method of inverse problem for Diffuse Optical Tomography.

Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2005). Local diffusion regularisation method for optical tomography reconstruction using robust statistics. Optics Letters, 30 (18), 2439-2441.

Edwards, P.J., Nijmeh, A.D., McGurk, M., Odell, E., Fenlon, M.R., Marsden, P.K., Hawkes, D.J. (2005). Validation of PET imaging by alignment to histology slices.

Elaloufi, R., Arridge, S. (2005). Modelling the influence of interfaces and multiples layers on light propagation in a slab geometry with the Radiative Transport Equation.

Elaloufi, R., Arridge, S. (2005). Modelling the influence of interfaces and multiple layers on light propagation in a slab geometry with the Radiative Transport Equation.

Geddes, J., Lloyd, S., Simpson, A., Rossor, M., Fox, N., Hill, D., ...Johnstone, E. (2005). NeuroGrid: Using grid technology to advance neuroscience. 18th IEEE Symposium on Computer-Based Medical Systems, Proceedings, 570-572. doi:10.1109/CBMS.2005.76

Gibson, A.P., Austin, T., Everdell, N., Meek, J.H., Wyatt, J.S., Schweiger, M., ...Hebden, J.C. (2005). 3D optical tomography of the neonatal brain.

Gibson, A.P., Everdell, N., Md Yusof, R., Branco, G., Jennions, D., Hebden, J., ...Schweiger, M. (2005). 3-D optical tomography of the neonatal brain. Optics InfoBase Conference Papers,

Gibson, A.P., Hebden, J.C., Arridge, S.R. (2005). Recent advances in diffuse optical imaging. Physics in Medicine and Biology, 50 R1-R43. doi:10.1088/0031-9155/50/4/R01

Gibson, A.P., Hebden, J.C., Riley, J., Everdell, N.L., Schweiger, M., Arridge, S.R., Delpy, D.T. (2005). Linear and non-linear reconstruction for optical tomography of phantoms with non-scattering regions. Applied Optics, 44 3925-3936.

Griffin, L. (2005). International Journal of Computer Vision: Editorial.

Griffin, L.D. (2005). editorial for special issue on Scale Space '03.

Griffin, L.D. (2005). Feature classes for 1-D, 2nd order image structure arise from the maximum likelihood statistics of natural images. Network: Computation in Neural Systems, 16 (2), 301-320. doi:10.1080/09548980500289874

Griffin, L.D. (2005). Deduction of feature categories from colour images.

Griffin, L.D. (2005). Geometric texton theory: the 1-D, 2nd order jet.

Griffin, L.D. (Ed.), (2005). Scale Space '03 special issue. International Journal of Computer Vision, 64 (2-3),

Griffin, L.D., Lillholm, M. (2005). Image Features and the 1-D, 2nd Order Gaussian Derivative Jet.

Hammond, P., Hutton, T.J., Allanson, J.E., Buxton, B., Campbell, L.E., Smith, J.C., ...Murphy, K.C. (2005). Discriminating power of localized three-dimensional facial morphology. The American Journal of Human Genetics, 77 (6), 999-1010. doi:10.1086/498396

Haroon, H.A., Luzzi, S., Alexander, D.C., Ciccarelli, O., Wheeler-Kingshott, C.A.M., Lambon-Ralph, M.A., Parker, G.J.M. (2005). Probabilistic tractography analysis of superior temporal gyrus connectivity to Wernicke's and Broca's areas.

Hawkes, D., Barratt, D., Blackall, J., Chandler, A., McClelland, J., Penney, G. (2005). Computational models in image guided interventions.. 2005 27TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-7, 7246-7249. doi:10.1109/IEMBS.2005.1616183

Hawkes, D.J., Barratt, D., Blackall, J.M., Chan, C., Edwards, P.J., Rhode, K., ...Hill, D.L. (2005). Tissue deformation and shape models in image-guided interventions: a discussion paper. Medical Image Analysis, 8 (2), 163-175.

Hebden, J.C., Yates, T.D., Gibson, A., Everdell, N., Arridge, S.R., Chicken, D.W., ...Keshtgar, M.R.S. (2005). Monitoring recovery after laser surgery of the breast with optical tomography: a case study. Applied Optics, 44 (10), 1898-1904.

Heckemann, R.A., Hajnal, J.V., Rueckert, D., Hill, D.L.G., Hammers, A. (2005). Propagating labels of the human brain based on non-rigid MR image registration: An evaluation.

Hill, D.L., McLeish, K., Keevil, S.F. (2005). Impact of electromagnetic field exposure limits in Europe: is the future of interventional MRI safe?. ACAD RADIOL, 12 (076-6332 (Print), 9), 1135-1142.

Hu, S., Buxton, B.F. (2005). “Using an Avatar to Develop a System for the Predication of Human Body Pose from Moments”.

Hu, S., Mortensen, J., Buxton, B.F. (2005). A Real-Time Tracking System Developed for an Interactive Stage Performance.

Irarrazaval, P., Boubertakh, R., Razavi, R., Hill, D. (2005). Dynamic three-dimensional undersampled data reconstruction employing temporal registration. Magnetic Resonance in Medicine, 54 (5), 1207-1215. doi:10.1002/mrm.20671

Jackson, T.L., Griffin, L., Vote, B., Hillenkamp, J., Marshall, J. (2005). An experimental method for testing novel retinal vital stains. Experimental Eye Research, 81 (4), 446-454. doi:10.1016/j.exer.2005.03.004

Keevil, S.F., Gedroyc, W., Gowland, P., Hill, D.L., Leach, M.O., Ludman, C.N., ...Young, I.R. (2005). Electromagnetic field exposure limitation and the future of MRI. BR J RADIOL, 78 (007-1285 (Print), 935), 973-.

Lambiase, P., Hegde, S., Sermesant, M., Rhode, K.S., Hill, D.L.G., Razavi, R., Gill, J.S. (2005). Real-time integrated X-ray and magnetic resonance imaging (XMR) - A novel strategy to optimise precise catheter placement during pulmonary vein isolation.

Leung, K.K., Holden, M., Saeed, N., Brooks, K., Buckton, J., Williams, A., ...Rueckert, D. (2005). Automated quantitative analysis of rheumatoid arthritis lesions in MRI.

Manzke, R., Koken, P., Hawkes, D., Grass, M. (2005). Helical cardiac cone beam CT reconstruction with large area detectors: a simulation study.. Physics in Medicine and Biology, 50 (7), 1547-1568.

McClelland, J., Blackall, J., Hughes, S., Ahmad, S., Landau, D., Hawkes, D. (2005). 4D models of respiratory motion for use in RT planning and their advantages over 4DCT techniques.

MCCLELLAND, J., Chandler, A.G., Blackall, J.M., Ahmad, S., Landau, D., Hawkes, D.J. (2005). 4D Motion Models over the Respiratory Cycle for use in Lung Cancer Radiotherapy Planning.

McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Noble, J.A., Byrne, J.V., Cox, T.C. (2005). A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use. IEEE TRANSACTIONS ON MEDICAL IMAGING, 24 (8), 1058-1066. doi:10.1109/TMI.2005.852067

McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Noble, J.A., Byrne, J.V., Cox, T.C. (2005). A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use. IEEE TRANS MED IMAGING, 24 (278-0062 (Print), 8), 1058-1066.

Muthurangu, V., Atkinson, D., Sermesant, M., Miquel, M.E., Hegde, S., Johnson, R., ...Tulloh, R. (2005). Measurement of total pulmonary arterial compliance using invasive pressure monitoring and MR flow quantification during MR-guided cardiac catheterization. American Journal of Physiology - Heart and Circulatory Physiology, 289 (3), H1301-H1306. doi:10.1152/ajpheart.00957.2004

Muthurangu, V., Sermesant, M., Atkinson, D., Hill, D.L.G., Razavi, R.S. (2005). A novel method of measuring PVR and total pulmonary arterial compliance using simultaneous pressure monitoring and phase contrast MR flow quantification.

Nahmias, J.D., Steed, A., Buxton, B. (2005). Analysis of cost functions and structured light patterns for modern dynamic programming stereo algorithms.

Nahmias, J.D., Steed, A., Buxton, B. (2005). Evaluation of Modern Dynamic Programming Algorithms for Real-time Active Stereo Systems.

Nasrallah, A., Griffin, L. (2005). Multi-local statistics of gradient directions in natural images.

Nedjati-Gilani, S., Cook, P.A., Parker, G.J., Alexander, D.C. (2005). Voxel-Based Classification of White Matter Fibre Complexity in Diffusion MRI.

Nedjati-Gilani, S., Cook, P.A., Parker, G.J.M., Alexander, D.C. (2005). .

Nijmeh, A.D., Goodger, N.M., Hawkes, D., Edwards, P.J., McGurk, M. (2005). Image-guided navigation in oral and maxillofacial surgery.. British Journal of Oral and Maxillofacial Surgery, 43 (4), 294-302. doi:10.1016/j.bjoms.2004.11.018

Nissila, I., Noponen, T., Kotilahti, K., Katila, T., Lipiainen, L., Tarvainen, T., ...Arridge, S. (2005). Instrumentation and calibration methods for the multichannel measurement of phase and amplitude in optical tomography. REVIEW OF SCIENTIFIC INSTRUMENTS, 76 (4), doi:10.1063/1.1884193

Noble, N.M.I., Boubertakh, R., Razavi, R.S., Hill, D.L.G. (2005). Inter-breath-hold registration for the production of high resolution cardiac MR volumes.

Noble, N.M.I., Boubertakh, R., Razavi, R.S., Hill, D.L.G. (2005). Inter-breath-hold registration for the production of high resolution cardiac MR volumes.

Panalkis, N., McClelland, J., Chandler, A., Blackall, J., Ahmad, S., Hughes, S., ...Brada, M. (2005). Intrafractional movement of the oesophagus in patients with Non-Small Cell Lung Cancer (NSCLC).

Parker, G.J., Luzzi, S., Alexander, D.C., Wheeler-Kingshott, C.A., Ciccarelli, O., Lambon Ralph, M.A. (2005). Lateralization of ventral and dorsal auditory-language pathways in the human brain. NeuroImage, 24 (3), 656-666.

Parker, G.J.M., Alexander, D.C. (2005). Probabilistic Anatomical Connectivity Derived from the Microscopic Persistent Angular Structure of Cerebral Tissue.

Parker, G.J.M., Alexander, D.C. (2005). Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue. Philosophical Transactions of the Royal Society B: Biological Sciences, 360 (1457), 893-902. doi:10.1098/rstb.2005.1639

Penney, G.P., Barratt, D.C., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2005). Cadaver validation of intensity-based ultrasound-to-CT registration.

Powell, H.W., Parker, G.J., Alexander, D.C., Symms, M.R., Boulby, P.A., Wheeler-Kingshott, C.A., ...Duncan, J.S. (2005). MR tractography predicts visual field defects following temporal lobe resection. Neurology, 65 (4), 596-599.

Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Barker, G.J., ...Duncan, J.S. (2005). MR-Tractography predicts visual field defects following temporal lobe resection.

Prieto, C., Guarini, M., Hill, D.L.G., Boubertakh, R.B., Batchelor, P.G., Hajnal, J., Irrarazaval, P. (2005). Under-Sampled Dynamic Data Reconstruction Based on Object Motion Estimation.

Ren, J., Sneller, B., Rueckert, D., Hajnal, J., Heckerman, R., Smith, S., ...Hill, D. (2005). A comparison of the tissue classification and the segmentation propagation techniques in MRI brain image segmentation.

Rhode, K.S., Lambrou, T., Hawkes, D.J., Seifalian, A.M. (2005). Novel approaches to the measurement of arterial blood flow from dynamic digital X-ray images. IEEE TRANS MED IMAGING, 24 (278-0062 (Print), 4), 500-513.

Rhode, K.S., Sermesant, M., Brogan, D., Hegde, S., Hipwell, J., Lambiase, P., ...Gill, J.S. (2005). A system for real-time XMR guided cardiovascular intervention. IEEE TRANSACTIONS ON MEDICAL IMAGING, 24 (11), 1428-1440. doi:10.1109/TMI.2005.856731

Ruto, A., Buxton, B.F. (2005). Application of a robust and efficient ICP algorithm for fitting a deformable 3D human torso model to noisy data.

Sanchez-Ortiz, G.I., Sermesant, M., Rhode, K.S., Chandrashekara, R., Razavi, R., Hill, D.L.G., Rueckert, D. (2005). Detecting and comparing the onset of myocardial activation and regional motion changes in tagged MR for XMR-guided RF ablation.

Sanchez-Ortiz, G.I., Sermesant, M., Rhode, K.S., Chandrashekara, R., Razavi, R., Hill, D.L.G., Rueckert, D. (2005). Localization of abnormal conduction pathways for tachyarrhythmia treatment using tagged MRI.

Sanchez-Ortiz, G.I., Sermesant, M., Rhode, K.S., Chandrashekara, R., Razavi, R., Hill, D.L.G., Rueckert, D. (2005). Localization of abnormal conduction pathways for tachyarrhythmia treatment using tagged MRI.

Schweiger, M., Camara-Rey, O., Crum, W.R., Lewis, E., Schnabel, J., Arridge, S.R., ...Fox, N. (2005). An inverse problem approach to the estimation of volume change.

Sermesant, M., Coudière, Y., Moreau-Villéger, V., Rhode, K.S., Hill, D.L.G., Razavi, R.S. (2005). A fast-marching approach to cardiac electrophysiology simulation for XMR interventional imaging.

Sermesant, M., Coudiere, Y., Moreau-Villeger, V., Rhode, K.S., Hill, D.L.G., Razavi, R.S. (2005). A fast-marching approach to cardiac electrophysiology simulation for XMR interventional imaging.

Sermesant, M., Moireau, P., Camara, O., Sainte-Marie, J., Andriantsimiavona, R., Cimrman, R., ...Razavi, R. (2005). Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties.

Sermesant, M., Rhode, K., Sanchez-Ortiz, G.I., Camara, O., Andriantsimiavona, R., Hegde, S., ...Rosenthal, E. (2005). Simulation of cardiac pathologies using an electromechanical biventricular model and XMR interventional imaging. MED IMAGE ANAL, 9 (361-8415 (Print), 5), 467-480.

Spanlang, B., Vassilev, T.I., Walters, J., Buxton, B.F. (2005). A Virtual Clothing System for Retail and Design. Research Journal of Textile and Apparel, 9 (1), 74-87.

Tarvainen, T., Kolehmainen, V., Vauhkonen, M., Vanne, A., Gibson, A.P., Schweiger, M., ...Kaipio, J.P. (2005). Computational calibration method for optical tomography. Applied Optics, 44 (10), 1879-1888.

Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2005). Coupled radiative transfer equation and diffusion approximation model for photon migration in turbid medium with low-scattering and non-scattering regions,. Physics in Medicine and Biology, 50 4913-4930.

Wilczkowiak, M., Brostow, G.J., Tordoff, B., Cipolla, R. (2005). Hole Filling Through Photomontage.

Wright, S.D., Schweiger, M., Arridge, S. (2005). Solutions to the transport equation using variable order angular basis.

Wright, S.D., Schweiger, M., Arridge, S. (2005). Solutions to the transport equation using variable order angular basis.

Wright, S., Schweiger, M., Arridge, S.R. (2005). Solutions to the transport equation using variable order angular basis.

Yates, T.D., Hebden, J.C., Gibson, A.P., Enfield, L., Everdell, N.L., Arridge, S.R., Delpy, D.T. (2005). Time-resolved optical mammography using a liquid coupled interface. Journal of Biomedical Optics, 10 054011-.

Yates, T.D., Hebden, J.C., Gibson, A.P., Everdell, N.L., Arridge, S.R., Douek, M. (2005). Optical tomography of the breast using a multi-channel time-resolved imager. Physics in Medicine and Biology, 50 2503-2517. doi:10.1088/0031-9155/50/11/005

Zografos, V., Buxton, B.F. (2005). Affine Invariant, Model-Based Object Recognition Using Robust Metrics and Bayesian Statistics.

2004

Alexander, D.C. (2004). A comparison of q-ball and PASMRI on sparse diffusion MRI data.

Arridge, S.R. (2004). Time domain optical tomography.

Atkinson, D., Hajnal, J.V., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2004). Parallel MRI for Regridding Multi-Shot Diffusion Data.

Atkinson, D., Larkman, D., Batchelor, P.G., Hajnal, J., Hill, D.L.G. (2004). CARE: Coil-based Artifact Reduction.

Atkinson, D., Larkman, D., Batchelor, P.G., Hajnal, J., Hill, D.L.G. (2004). Multiple Coils for Reduction of Flow Artefacts in MR Images.

Atkinson, D., Larkman, D.J., Batchelor, P.G., Hill, D.L., Hajnal, J.V. (2004). Coil-based artifact reduction. Magnetic Resonance in Medicine, 52 (4), 825-830. doi:10.1002/mrm.20226

Austin, T., Hebden, J.C., Gibson, A., Yusof, R.M., Arridge, S.R., Meek, J.H., ...Wyatt, J.S. (2004). Optical imaging of the neonatal brain.

Baltes, C., Kozerke, S., Atkinson, D., Boesiger, P. (2004). Restrospective Respiratory Motion Correction for Navigated Cine Velocity Mapping. Journal of Cardiovascular Magnetic Resonance, 6 (4), 785-792. doi:10.1081/JCMR-200036119

Batchelor, P.G., Atkinson, D., Hajnal, J., Larkman, D., Hill, D.L.G. (2004). Parallel Imaging and MR Motion Correction.

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Larkman, D.J., Hajnal, J.V. (2004). A Matrix Framework for MR Motion Correction.

Batchelor, P.G., Atkinson, D., Larkman, D., Hajnal, J., Hill, D.L.G. (2004). Fitting Coil and Data in Parallel Imaging.

Batchelor, P.G., Calamante, F., Atkinson, D., Tournier, D., Connelly, A., Hill, D.L.G. (2004). Classification of Fibre Tracts Using Differential Geometry.

Batchelor, P.G., Moakher, M., Atkinson, D., Calamante, F., Connelly, A. (2004). A rigorous framework for diffusion tensor calculus. Magnetic Resonance in Medicine, 53 (1), 221-225. doi:10.1002/mrm.20334

Blackall, J.M., Penney, G.P., King, A.P., Adam, A.N., Hawkes, D.J. (2004). Tracking alignment of sparse ultrasound with preoperative images of the liver and an interventional plan using models of respiratory motion and deformation.

Brostow, G.J., Essa, I., Steedly, D., Kwatra, V. (2004). Novel skeletal representation for articulated creatures.

Byrne, J.V., Colominas, C., Hipwell, J., Cox, T., Noble, J.A., Penney, G.P., Hawkes, D.J. (2004). Assessment of a technique for 2D-3D registration of cerebral intra-arterial angiography. BRITISH JOURNAL OF RADIOLOGY, 77 (914), 123-128. doi:10.1259/bjr/27339681

Byrne, J.V., Colominas, C., Hipwell, J., Cox, T., Noble, J.A., Penney, G.P., Hawkes, D.J. (2004). Assessment of a technique for 2D-3D registration of cerebral intra-arterial angiography. BR J RADIOL, 77 (007-1285 (Print), 914), 123-128.

Chan, C.S.K., Barratt, D.C., Edwards, P.J., Slomczykowski, M., Carter, T.J., Hawkes, D.J. (2004). Cadaver validation of the use of ultrasound for the instantiation of bony anatomy in image-guided orthopaedic surgery.

Chan, C.S.K., Edwards, P.J., Barratt, D.C., Slomczykowski, M., Hawkes, D.J. (2004). Ultrasound-based reconstruction and registration of 3D bone anatomy using statistical shape.

Chandler, A.G., Schnabel, J.A., Hawkes, D.J., Netsch, T., Cocosco, C.A. (2004). Slice-to-volume registration using mutual information between probabilistic image classifications.

Chatten, A.J., Barnham, K.W.J., Buxton, B.F., Ekins-Daukes, N.J., Malik, M.A. (2004). Quantum dot solar concentrators.

Cook, P.A., Alexander, D.C., Parker, G.J.M. (2004). Modelling noise-induced fibre-orientation error in diffusion-tensor MRI..

Cook, P.A., Alexander, D.C., Parker, G.J.M. (2004). Modelling noise-induced fibre-orientation error..

Corney, D.P.A., Buxton, B.F., Langdon, W.B., Jones, D.T. (2004). BioRAT: extracting biological information from full-length papers. Bioinformatics, 20 (17), 3206-3213.

Coulon, O.P., Alexander, D.C., Arridge, S.R. (2004). A regulatization scheme for coupled direction and magnitude information: application to 3D diffusion tensor magnetic resonance images. Medical image analysis, 8 (1), 27-47. doi:10.1016/j.media.2003.06.002

Crum, W.R., Griffin, L.D., Hawkes, D.J. (2004). Automatic estimation of error in voxel-based registration.

Crum, W.R., Hartkens, T., Hill, D.L. (2004). Non-rigid image registration: theory and practice. BR J RADIOL, 77 Spec No 2 (007-1285 (Print)), S140-S153. doi:10.1259/bjr/25329214

Curran, K.M., Alexander, D.C. (2004). Orientation coherence optimization in tensor image registration..

de Cunha, D.A., EADIE, L., Adams, B., Hawkes, D.J. (2004). Medical ultrasound image similarity measurement by human visual system (HVS) modelling.

de Cunha, D.A., Eadie, L.H., Barbur, J.L., Hawkes, D.J., Seifalian, A.M. (2004). The effect of image colour distortion on evaluation of donor liver suitability for transplantation. COMPUT BIOL MED, 34 (010-4825 (Print), 7), 615-632.

Dias, M.B., Buxton, B.F. (2004). Separating shape and pose variations. Image and Vision Computing, 22 (10), 851-861.

Edwards, P.J., Johnson, L.G., Hawkes, D.J., Fenlon, M.R., Strong, A.J., Gleeson, M.J. (2004). Clinical experience and perception in stereo augmented reality surgical navigation.

Griffin, L.D. (2000). Mean, median and mode filtering of images. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 456 (2004), 2995-3004.

Griffin, L.D. (2004). Wherefore the basic colour terms?.

Griffin, L.D. (2004). Optimality of the basic colour categories.

Griffin, L.D., Lillholm, M., Nielsen, M. (2004). Natural image profiles are most likely to be step edges. Vision Research, 44 (4), 407-421. doi:10.1016/j.visres.2003.09.025

Hammond, P., Hutton, T.J., Allanson, J., Buxton, B., Campbell, L., Karmiloff-Smith, A., ...Smith, A. (2004). RP404.

Hammond, P., Hutton, T.J., Allanson, J., Buxton, B., Karmiloff-Smith, A., Patton, M., ...Tassabehji, M. (2004). 3D dense surface models identify the most discriminating facial features in dysmorphic syndromes.

Hebden, J.C., Gibson, A., Austin, T., Yusof, R., Everdell, N., Delpy, D.T., ...Wyatt, J.S. (2004). Imaging changes in blood volume and oxygenation in the newborn infant brain using three-dimensional optical tomography. Physics in Medicine and Biology, 49 (7), 1117-1130. doi:10.1088/0031-9155/49/7/003

Hill, D.L. (2004). Ten years of preimplantation genetic diagnosis-aneuploidy screening: review of a multicenter report. FERTIL STERIL, 82 (015-0282 (Print), 2), 300-301.

Holden, M., Griffin, L.D., Saeed, N., Hill, D.L.G. (2004). Multi-channel mutual information using scale space.

Johnson, L.G., Edwards, P.J., Griffin, L.D., Hawkes, D.J. (2004). Depth perception of stereo overlays in image-guided surgery.

Kastanis, I., Arridge, S.R., Silver, A.M.S., Hill, D.L., Ravazi, R. (2004). Reconstruction of the heart boundary from undersampled cardiac MRI using Fourier shape descriptors and local basis functions.

Kozerke, S., Hegde, S., Schaeffter, T., Lamerichs, R., Razavi, R., Hill, D.L. (2004). Catheter tracking and visualization using 19F nuclear magnetic resonance. Magnetic Resonance in Medicine, 52 (3), 693-697. doi:10.1002/mrm.20202

Langdon, W.B., Buxton, B.F. (2004). Genetic programming for mining DNA chip data from cancer patients. Genetic Programming and Evolvable Machines, 5 (3), 251-257.

Larkman, D.J., Atkinson, D., Hajnal, J.V. (2004). Artifact reduction using parallel imaging methods. Topics in Magnetic Resonance Imaging, 15 (4), 267-275. doi:10.1097/01.rmr.0000143782.39690.8a

Larsen, L., Griffin, L.D. (2004). Can a continuity heuristic be used to resolve the inclination ambiguity of polarized light imaging?.

Manzke, R., Grass, M., Hawkes, D. (2004). Artifact analysis and reconstruction improvement in helical cardiac cone beam CT.. IEEE Transactions on Medical Imaging, 23 (9), 1150-1164. doi:10.1109/TMI.2004.830804

Manzke, R., Grass, M., Nielsen, T., Köhler, T., Hawkes, D. (2004). Automatic phase point determination for cardiac CT imaging.

Manzke, R., Kohler, T., Nielsen, T., Hawkes, D., Grass, M. (2004). Automatic phase determination for retrospectively gated cardiac CT.. Medical Physics, 31 (12), 3345-3362.

McLeish, K., Kozerke, S., Crum, W.R., Hill, D.L. (2004). Free-breathing radial acquisitions of the heart. Magnetic Resonance in Medicine, 52 (5), 1127-1135. doi:10.1002/mrm.20252

Miquel, M.E., Hegde, S., Muthurangu, V., Corcoran, B.J., Keevil, S.F., Hill, D.L., Razavi, R.S. (2004). Visualization and tracking of an inflatable balloon catheter using SSFP in a flow phantom and in the heart and great vessels of patients. MAGN RESON MED, 51 (740-3194 (Print), 5), 988-995.

Muthurangu, V., Taylor, A., Andriantsimiavona, R., Hegde, S., Miquel, M.E., Tulloh, R., ...Razavi, R.S. (2004). Novel method of quantifying pulmonary vascular resistance by use of simultaneous invasive pressure monitoring and phase-contrast magnetic resonance flow. Circulation, 110 (7), 826-834. doi:10.1161/01.CIR.0000138741.72946.84

Noble, N.M.I., Hill, D.L.G., Breeuwer, M., Razavi, R. (2004). The automatic identification of hibernating myocardium.

O'Gorman, R.L., Selway, R.P., Reid, C.J., Hotton, G.R., Hall, E., Jarosz, J.M., ...Hill, D.L. (2004). Registered computed tomography images as an alternative to postimplantation magnetic resonance imaging in the assessment of subthalamic electrode placement. J COMPUT ASSIST TOMOGR, 28 (363-8715 (Print), 4), 548-550.

O'Gorman, R.L., Selway, R.P., Reid, C.J., Hotton, G.R., Hall, E., Jarosz, J.M., ...Hill, D.L.G. (2004). Registered computed tomography images as an alternative to postimplantation magnetic resonance imaging in the assessment of subthalamic electrode placement. Journal of Computer Assisted Tomography, 28 (4), 548-550. doi:10.1097/00004728-200407000-00018

Parker, G.J.M., Luzzi, S., Lambon-Ralph, M.A., Wheeler-Kingshott, C.A.M., Ciccarelli, O., Alexander, D.C. (2004). Lateralisation of connective pathways between language centres demonstrated using group analysis of fibre tracking incorporating crossing fibre information.

Penney, G.P., Blackall, J.M., Hamady, M.S., Sabharwal, T., Adam, A., Hawkes, D.J. (2004). Registration of freehand 3D ultrasound and magnetic resonance liver images. Medical Image Analysis, 8 (1), 81-91. doi:10.1016/j.media.2003.07.003

Penney, G.P., Schnabel, J.A., Rueckert, D., Hawkes, D.J., Niessen, W.J. (2004). Registration-based interpolation using a high-resolution image for guidance.

Rhode, K.S., Sermesant, M., Hegde, S., Sanchez-Ortiz, G., Rueckert, D., Razavi, R., Hill, D.L.G. (2004). XMR guided cardiac electrophysiology study and radio frequency ablation.

Sanchez-Ortiz, G.I., Chandrashekara, R., Rhode, K.S., Razavi, R., Hill, D.L.G., Rueckert, D. (2004). Detecting regional changes in myocardial contraction patterns using MRI.

Sanchez-Ortiz, G.I., Sermesant, M., Chandrashekara, R., Rhode, K.S., Razavi, R., Hill, D.L.G., Rueckert, D. (2004). Detecting the onset of myocardial contraction for establishing inverse electro-mechanical coupling in XMR guided RF ablation.

Schnabel, J.A., Batchelor, P.G., Tanner, C., Quist, M., Gerritsen, F.A., Hawkes, D.J. (2004). Modelling tissue deformations using free-form modes of vibration.

Sermesant, M., Rhode, K., Anjorin, A., Hegde, S., Sanchez-Ortiz, G., Rueckert, D., ...Razavi, R. (2004). Simulation of the electromechanical activity of the heart using XMR interventional imaging.

Spanlang, B., Vassilev, T., Buxton, B.F. (2004). Compositing Photographs with Virtual Clothes for Design.

Tanner, C., Khazen, M., Kessar, P., Leach, M.O., Hawkes, D.J. (2004). Classification Improvement by Segmentation Refinement: Application to Contrast-Enhanced MR-Mammography.

Terry, M., Brostow, G.J., Ou, G., Tyman, J., Gromala, D. (2004). Making space for time in time-lapse photography.

Thomaz, C.E., Boardman, J.P., Hill, D.L.G., Hajnal, J.V., Edwards, D.D., Rutherford, M.A., ...Rueckert, D. (2004). Using a maximum uncertainty LDA-based approach to classify and analyse MR brain images.

Vilhunen, T., Kohlehmainen, V., Vauhkonen, M., Vanne, A., Gibson, A.P., Schweiger, M., ...Kaipio, J.P. (2004). Computational calibration method for optical tomography.

Ward, J.J., McGuffin, L.J., Bryson, K., Buxton, B.F., Jones, D.T. (2004). The DISOPRED server for the prediction of protein disorder.. Bioinformatics, 20 (13), 2138-2139.

Ward, J.J., Sodhi, J.S., McGuffin, L.J., Buxton, B.F., Jones, D.T. (2004). Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. Journal of Molecular Biology, 337 (3), 635-645. doi:10.1016/j.jmb.2004.02.002

Yates, T.D., Hebden, J.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Arridge, S.R., ...Chicken, W. (2004). Clinical results from a 32-channel time resolved system used to image the breast.

Zheng, Y., Tanner, C., Hill, D.L.G., Hawkes, D.J., White, M.J., Khazen, M., Leach, M.O. (2004). Alignment of dynamic contrast enhanced MR volumes of the breast for a multi-centre trial: An exemplar grid application.

2003

(2003). Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information.. Information processing in medical imaging : proceedings of the ... conference, 18 684-695.

(2003). Persistent Angular Structure: new insights from diffusion MRI data. Dummy version.. Information processing in medical imaging : proceedings of the ... conference, 18 672-683.

Atkinson, D., Batchelor, P.G., Larkman, D.J., Hill, D.L.G., Hajnal, J.V. (2003). Generalised Motion Correction in Parallel Imaging.

Atkinson, D., Hill, D.L.G. (2003). Reconstruction after Rotational Motion. Magnetic Resonance in Medicine, 49 (1), 183-187. doi:10.1002/mrm.10333

Atkinson, D., Kozerke, S., Razavi, R. (2003). Retrospective Image Correction Combined with Slice Tracking for Respiratory Motion Compensation. Journal of Cardiovascular Magnetic Resonance, 5 (1), 270-271.

Batchelor, P.G., Atkinson, D., Hill, D.L., Calamante, F., Connelly, A. (2003). Anisotropic noise propagation in diffusion tensor MRI sampling schemes. Magnetic Resonance in Medicine, 49 (6), 1143-1151. doi:10.1002/mrm.10491

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2003). Icosahedral, direction encoding of the diffusion tensor propagages noise isotropically .. Magnetic Resonance in Medicine, 49 (6), 1143-1151.

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2003). The Effect on DT-MRI of Increased Number of Directions: Further Advances on Icosahedral Schemes.

Batchelor, P.G., Calamante, F., Atkinson, D., Hill, D.L.G., Blyth, R., Connelly, A. (2003). Classification of bundles of white matter tract from DTI without registration.

Batchelor, P.G., Calamante, F., Atkinson, D., Hill, D.L.G., Blyth, R., Connelly, A. (2003). Classification of White Matter Tract Shapes from DTI Without Registration.

Blyth, R., Cook, P.A., Alexander, D.C. (2003). Tractography with multiple fibre directions.

Buxton, B., Dias, M.B. (2003). .

Buxton, B.F., Dias, M.B. (2003). The Principles of View Invariant, Image-Based Linear Flexible Shape Modelling.

Bydder, M., Atkinson, D., Larkman, D.J., Hill, D.L., Hajnal, J.V. (2003). SMASH navigators. Magnetic Resonance in Medicine, 49 (3), 493-500. doi:10.1002/mrm.10388

Chan, C.S.K., Edwards, P.J., Hawkes, D.J. (2003). Integration of ultrasound based registration with statistical shape models for computer assisted orthopaedic surgery.

Chatten, A.J., Barnham, K.W.J., Buxton, B.F., Ekins-Daukes, N.J., Malik, M.A. (2003). A new approach to modelling quantum dot concentrators. SOLAR ENERGY MATERIALS AND SOLAR CELLS, 75 (3-4), 363-371. doi:10.1016/S0927-0248(02)00182-4

Cook, P.A., Alexander, D.C. (2003). Inter-subject comparison of brain connectivity using diffusion tensor magnetic resonance imaging.

Corlu, A., Durduran, T., Choe, R., Schweiger, M., Hillman, E.M.C., Arridge, S.R., Yodh, A.G. (2003). Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography. OPTICS LETTERS, 28 (23), 2339-2341. doi:10.1364/OL.28.002339

Corney, D.P.A., Buxton, B.F., Langdon, W.B., Charlwood, J., Woolard, P.M., Jones, D.T. (2003). Extracting Biological Information from Full-length Papers. .

Coulon, O.P., Alexander, D.C., Arridge, S.R. (2003). Regularisation d'images de tenseurs de diffusion par resonance magnetique.

Crum, W.R., Griffin, L.D., Hill, D.L., Hawkes, D.J. (2003). Zen and the art of medical image registration: correspondence, homology, and quality. NEUROIMAGE, 20 (053-8119 (Print), 3), 1425-1437. doi:10.1016/j.neuroimage.2003.07.014

Crum, W.R., Hill, D.L., Hawkes, D.J. (2003). Information theoretic similarity measures in non-rigid registration. INF PROCESS MED IMAGING, 18 (011-2499 (Print)), 378-387.

Curran, K.M., Alexander, D.C. (2003). Orientation matching for registration of diffusion tensor images.

Curran, K.M., Alexander, D.C. (2003). Diffusion tensor orientation matching for image registration. MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3, 5032 149-156. doi:10.1117/12.481130

Dias, M.B., Buxton, B. (2003). Exploring the Possibility of Estimating Bas-Relief angles, Illumination Direction and Surface Texture from Multiple Images. .

Dias, M.B., Buxton, B.F. (2003). Advances in Integrated Shape and Pose Modelling. .

Dias, M.B., Buxton, B.F. (2003). Estimating Bas-Relief angles, Illumination Direction and Surface Texture.

Dias, M.B., Buxton, B.F. (2003). Enforcing a Shape Correspondence Between Two Views of a 3D Non-Rigid Object.

Dias, M.B., Buxton, B.F. (2003). Separating Shape And Pose Variations. .

Duda, J., Rivera, M., Alexander, D.C., Gee, J.C. (2003). Optical flow based method for non-rigid registration of diffusion tensor magnetic resonance images.

Duda, J.T., Rivera, M., Alexander, D.C., Gee, J.C. (2003). A method for non-rigid registration of diffusion tensor magnetic resonance images. Proceedings of SPIE - The International Society for Optical Engineering, 5032 II 1186-1196. doi:10.1117/12.481155

Gibson, A.P., Riley, J., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2003). A Method for Generating Patient-Specific Finite Element Meshes for Head Modelling. Physics in Medicine and Biology, (48), 481-495. doi:10.1088/0031-9155/48/4/305

Gibson, A., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2003). A method for generating patient-specific finite element meshes for head modelling.

Gibson, A., Yusof, R.M., Dehghani, H., Riley, J., Everdell, N., Richards, R., ...Delpy, D.T. (2003). Optical tomography of a realistic neonatal head phantom.

Gibson, A., Yusof, R.M., Dehghani, H., Riley, J., Everdell, N., Richards, R., ...Delpy, D.T. (2003). Optical tomography of a realistic neonatal head phantom. Applied Optics, 42 (16), 3019-3116.

Griffin, L.D., Lillholm, M. (2003). Mode estimation by pessimistic scale space tracking.

Griffin, L.D., Lillholm, M. (Eds.), (2003). Proceedings of the Scale Space 2003 conference. Springer.

Hansen, M.S., Atkinson, D., Kozerke, S. (2003). Retrospective correction of post navigator delays in coronary MRA.

Hartkens, T., Hill, D.L., Castellano-Smith, A.D., Hawkes, D.J., Maurer, C.R., Jr, M., ...C, L. (2003). Measurement and analysis of brain deformation during neurosurgery. IEEE Transactions on Medical Imaging, 22 (1), 82-92. doi:10.1109/TMI.2002.806596

Hawkes, D.J., Edwards, P.J., Barratt, D.C., Blackall, J.M., Penney, G.P., Tanner, C. (2003). Measuring and Modeling Soft Tissue Deformation for Image Guided Interventions.

Hawkes, D.J., Hill, D.L. (2003). Medical imaging at Guy's Hospital, King's College London. IEEE TRANS MED IMAGING, 22 (278-0062 (Print), 9), 1033-1041.

Hawkes, D.J., Hill, D.L.G. (2003). Medical Imaging at Guy's Hospital, King's College London. IEEE Transactions on Medical Imaging, 22 (9), 1033-1041. doi:10.1109/TMI.2003.815866

Heino, J., Arridge, S., Sikora, J., Somersalo, E. (2003). Anisotropic effects in highly scattering media. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 68 (3 1), 319081-319088.

Heino, J., Arridge, S., Sikora, J., Somersalo, E. (2003). Anisotropic effects in highly scattering media. Physical Review E, 68 (3), 031908-1-031908-8. doi:10.1103/PhysRevE.68.031908

Hickman, S.J., Coulon, O., Parker, G.J.M., Barker, G.J., Stevenson, V.L., Chard, D.T., ...Miller, D.H. (2003). Application of a B-spline active surface technique to the measurement of cervical cord volume in multiple sclerosis from three-dimensional MR images. Journal of Magnetic Resonance Imaging, 18 (3), 368-371. doi:10.1002/jmri.10354

Hipwell, J.H., Penney, G.P., McLaughlin, R.A., Rhode, K., Summers, P., Cox, T.C., ...Hawkes, D.J. (2003). Intensity-based 2-D-3-D registration of cerebral angiograms. IEEE TRANS MED IMAGING, 22 (278-0062 (Print), 11), 1417-1426.

Hutton, T.J., Buxton, B.F., Hammond, P. (2003). Automated registration of 3D faces using dense surface models.

Hutton, T.J., Buxton, B.F., Hammond, P. (2003). Automated registration of 3D faces using dense surface models.

Hutton, T.J., Buxton, B.F., Hammond, P., Potts, H.W.W. (2003). Estimating average growth trajectories in shape-space using kernel smoothing. IEEE Transactions on Medical Imaging, 22 (6), 747-753. doi:10.1109/TMI.2003.814784

Jansons, K.M., Alexander, D.C. (2003). Persistent Angular Structure: new insights from diffusion MRI data. Dummy version.. Inf Process Med Imaging, 18 672-683.

Jansons, K.M., Alexander, D.C. (2003). Persistent Angular Structure: New Insights from Diffusion Magnetic Resonance Imaging Data. Inverse Problems, 19 1031-1046. doi:10.1088/0266-5611/19/5/303

Johnson, L.G., Edwards, P., Hawkes, D. (2003). Surface transparency makes stereo overlays unpredictable: the implications for augmented reality.. Studies in Health Technology and Informatics, 94 131-136. doi:10.3233/978-1-60750-938-7-131

Johnson, L.G., Edwards, P.J., Barratt, D.C., Hawkes, D.J. (2003). The problem of perceiving accurate depth information through a surgical augmented reality system.

Kolehmainen, V., Prince, S., Arridge, S.R., Kaipio, J.P. (2003). State Estimation Approach to Non-Stationary Optical Tomography Problem. Journal of the Optical Society of America A: Optics, Image Science, and Vision, (20), 876-889.

Langdon, W.B., Barrett, S.J., Buxton, B. (2003). Comparison of AdaBoost and Genetic Programming for combining Neural Networks for Drug Discovery.

Langdon, W.B., Barrett, S.J., Buxton, B.F. (2003). Comparison of AdaBoost and Genetic Programming for combining Neural Networks for Drug Discovery.

Langdon, W.B., Barrett, S.J., Buxton, B.F. (2003). Predicting Biochemical Interactions - Human P450 2D6 Enzyme Inhibition.

Lillholm, M., Nielsen, M., Griffin, L.D. (2003). Feature-based image analysis. International Journal of Computer Vision, 52 (2-3), 73-95. doi:10.1023/A:1022995822531

Manzke, R., Grass, M., Nielsen, T., Shechter, G., Hawkes, D. (2003). Adaptive temporal resolution optimization in helical cardiac cone beam CT reconstruction. MEDICAL PHYSICS, 30 (12), 3072-3080. doi:10.1118/1.1624756

Marti-Lopez, L., Bouza-Dominguez, J., Hebden, J.C., Arridge, S.R., Martinez-Celorio, R.A. (2003). Validity conditions for radiative transfer equation. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 20 (11), 2046-2056.

Miquel, M.E., Hill, D.L., Baker, E.J., Qureshi, S.A., Simon, R.D., Keevil, S.F., Razavi, R.S. (2003). Three- and four-dimensional reconstruction of intra-cardiac anatomy from two-dimensional magnetic resonance images. INT J CARDIOVASC IMAGING, 19 (569-5794 (Print), 3), 239-254.

Miquel, M.E., Hill, D.L.G., Baker, E.J., Qureshi, S.A., Simon, R.D.B., Keevil, S.F., Razavi, R.S. (2003). Three- and four-dimensional reconstruction of intra-cardiac anatomy from two-dimensional magnetic resonance images. International Journal of Cardiovascular Imaging, 19 (3), 239-254. doi:10.1023/A:1023671031207

Noble, N.M., Hill, D.L., Breeuwer, M., Schnabel, J.A., Hawkes, D.J., Gerritsen, F.A., Razavi, R. (2003). Myocardial delineation via registration in a polar coordinate system. ACAD RADIOL, 10 (076-6332 (Print), 12), 1349-1358.

Oliveira, J., Zhang, D., Spanlang, B., Buxton, B. (2003). Animating Scanned Human Models. Journal of WSCG, 11 (2), 362-369.

Parker, G.J.M., Alexander, D.C. (2003). Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information.

Parker, G.J.M., Alexander, D.C. (2003). Probabilistic Monte-Carlo based mapping of cerebral connections utilising crossing fibre information.

Prince, S., Kolehmainen, V., Kaipio, J.P., Franceschini, M.A., Boas, D., Arridge, S.R. (2003). Time-Series Estimation of Biological Factors in Optical Diffusion Tomography. Physics in Medicine and Biology, (48), 1491-1504.

Razavi, R., Hill, D.L., Keevil, S.F., Miquel, M.E., Muthurangu, V., Hegde, S., ...Hawkes, D.J. (2003). Cardiac catheterisation guided by MRI in children and adults with congenital heart disease. The Lancet, 362 (9399), 1877-1882. doi:10.1016/S0140-6736(03)14956-2

Razavi, R.S., Hill, D.L., Muthurangu, V., Miquel, M.E., Taylor, A.M., Kozerke, S., Baker, E.J. (2003). Three-dimensional magnetic resonance imaging of congenital cardiac anomalies. Cardiology in the Young, 13 (5), 461-465. doi:10.1017/S1047951103000957

Rhode, K.S., Hill, D.L., Edwards, P.J., Hipwell, J., Rueckert, D., Sanchez Ortiz, G., ...Razavi, R. (2003). Registration and tracking to integrate X-ray and MR images in an XMR facility. IEEE Transactions on Medical Imaging, 22 (11), 1369-1378. doi:10.1109/TMI.2003.819275

Rhode, K.S., Hill, D.L.G., Edwards, P.J., Hipwell, J., Rueckert, D., Sanchez-Ortiz, G.I., ...Razavi, R. (2003). Application of XMR 2D-3D registration to cardiac interventional guidance.

Rhode, K.S., Hill, D.L.G., Edwards, P.J., Hipwell, J., Rueckert, D., Sanchez-Ortiz, G., ...Razavi, R. (2003). Registration and tracking to integrate X-ray and MR images in an XMR facility. IEEE TRANSACTIONS ON MEDICAL IMAGING, 22 (11), 1369-1378. doi:10.1109/TMI.2003.819275

Schweiger, M., Arridge, S.R. (2003). Image reconstruction in optical tomography using local basis functions. JOURNAL OF ELECTRONIC IMAGING, 12 (4), 583-593. doi:10.1117/1.1586919

Schweiger, M., Gibson, A.P., Arridge, S.R. (2003). Computational aspects of diffuse optical tomography. Computing in Science and Engineering, 5 (6), 33-41. doi:10.1109/MCISE.2003.1238702

Smith, A.D.C., Crum, W.R., Hill, D.L.G., Thacker, N.A., Bromiley, P.A. (2003). Biomechanical simulation of atrophy in MR images.

Spanlang, B., Vassilev, T., Buxton, B.F. (2003). Virtual Try-on in a Department Store.

Steed, A., Alexander, D., Cook, P., Parker, C. (2003). Visualizing Diffusion-Weighted MRI Data Using Collaborative Virtual Environment and Grid Technologies.

Stott, J.J., Culver, J.P., Arridge, S.R., Boas, D. (2003). Optode positional calibration in diffuse optical tomography. Applied Optics, 42 3154-3162.

Sukel, K.E., Catrambone, R., Essa, I.A., Brostow, G.J. (2003). Presenting Movement in a Computer-Based Dance Tutor.. INTERNATIONAL JOURNAL OF HUMAN-COMPUTER INTERACTION, 15 (3), 433-452. doi:10.1207/S15327590IJHC1503_08

Tahan, A., Buxton, B., Ruiz, M., Bougourd, J. (2003). Point Distribution Models of Human Body Shape from a Cononical Representation of 3D.

Tanner, C., Schnabel, J.A., Castellano-Smith, A.D., Degenhard, A., Leach, M.O., Hose, D.R., ...Hawkes, D.J. (2003). Validation of nonrigid image registration using finite-element methods: application to breast MR images. IEEE Transactions on Medical Imaging, 22 (2), 238-247. doi:10.1109/TMI.2002.808367

Ward, J.J., McGuffin, L.J., Buxton, B.F., Jones, D.T. (2003). Secondary structure prediction using support vector machines. Bioinformatics, 19 (13), 1650-1655. doi:10.1093/bioinformatics/btg223

Yusof, R., Hebden, J.C., Gibson, A., Everdell, N., Austin, T., Meek, J., ...Delpy, D.T. (2003). Validation of the use of homogenous reference phantoms for optical tomography of the neonatal brain. Proceedings of SPIE, 4955 6-11.

2002

Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Model selection in MR diffusion imaging.

Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Tissue structure complexity maps from high angular resolution diffusion weighted magnetic resonance measurements.

Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magnetic Resonance in Medicine, 48 (2), 331-340. doi:10.1002/mrm.10209

Alexander, D.C., Jansons, K.M. (2002). Spin echo attenuation to diffusion density: a general inversion for measurements on a sphere.

Arridge, S. (2002). Diffusion tomography in dense media. In Pike, E.R., Sabatier, P. (Eds.), Scattering. (pp. 920-936). Academic Press.

Atkinson, D. (2002). METHOD AND APPARATUS FOR REDUCING THE EFFECTS OF MOTION IN AN IMAGE. WO02086531A1.

Atkinson, D., Bydder, M., Hajnal, J.V., Hill, D.L.H., Larkman, D.J. (2002). SMASH Navigators.

Axer, H., Leunert, M., Mürköster, M., Gräßel, D., Larsen, L., Griffin, L.D., Keyserlingk, D.G.V. (2002). A 3D fiber model of the human brainstem. Computerized Medical Imaging and Graphics, 26 (6), 439-444. doi:10.1016/S0895-6111(02)00036-8

Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2002). Optimisation of Direction Schemes for Tensor Imaging: Rotational Invariance of the Normal Matrix.

Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G., Hawkes, D.J., Cox, T.C.S., Dean, A.F. (2002). Measures of folding applied to the development of the human fetal brain.. IEEE Transactions on Medical Imaging, 21 (8), 953-965. doi:10.1109/TMI.2002.803108

Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G., Hawkes, D.J., Cox, T.C.S., Dean, A.F. (2002). Measures of folding applied to the development of the human fetal brain. IEEE Transactions on Medical Imaging, 21 (8), 953-965. doi:10.1109/TMI.2002.803108

Batchelor, P.G., Castellano Smith, A.D., Hill, D.L., Hawkes, D.J., Cox, T.C., Dean, A.F. (2002). Measures of folding applied to the development of the human fetal brain. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 8), 953-965.

Batchelor, P.G., Hill, D.L.G., Atkinson, D., Calamante, F., Connelly, A. (2002). Fibre-tracking by solving the diffusion-convection equation.

Batchelor, P.G., Hill, D.L.G., Atkinson, D., Calamante, F., Connelly, A. (2002). Optimal choice of directions for Diffusion Tensor Imaging.

Bland, T., Hebden, J.C., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical Tomography of the Breast using a 32-Channel Time-Resolved Imager.

Castellano-Smith, A.D., Hartkens, T., Schnabel, J.A., Hose, R., Liu, H., Hall, W., ...Hill, D.L.G. (2002). A registration based mesh construction technique for finite element models of brains. Proceedings of SPIE - The International Society for Optical Engineering, 4684 I 538-549. doi:10.1117/12.467196

Cook, P.A., Alexander, D.C. (2002). Examination of White Matter Tissue Structures in the Human Brain.

Coulon, O., Hickman, S.J., Parker, G.J., Barker, G.J., Miller, D.H., Arridge, S.R. (2002). Quantification of spinal cord atrophy from magnetic resonance images via a B-spline active surface model.. Magnetic Resonance in Medicine, 47 (6), 1176-1185.

Curran, K.M., Alexander, D.C. (2002). Orientation matching for registration of diffusion tensor images.

Degenhard, A., Tanner, C., Hayes, C., Hawkes, D.J., Leach, M.O. (2002). Comparison between radiological and artificial neural network diagnosis in clinical screening. PHYSIOL MEAS, 23 (967-3334 (Print), 4), 727-739.

Dias, M.B., Buxton, B.F. (2002). Integrated Shape and Pose Modelling.

Douros, I., Buxton, B.F. (2002). Three-Dimensional Surface Curvature Estimation using Quadric Surface Patches.

Gee, J.C., Alexander, D.C., Rivera, M., Duda, J.T. (2002). Non-rigid registration of diffusion tensor MR images.

Gibson, A., Dehghani, H., Yusof, R.M., Hillman, E.M.C., Hebden, J.C., Schweiger, M., Arridge, S.R. (2002). .

Gibson, A., Riley, J., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2002). Optical Tomography of the Neonatal Head using a Patient-Specific Finite Element Mesh.

Griffin, L.D. (2002). Males are 'noisy females' when it comes to reporting the psychological structure of the basic colours.

Griffin, L.D. (2002). Local image structure, metamerism, norms and natural image statistics.

Griffin, L.D., Sepeheri, A. (2002). Performance of CIE94 for non-reference conditions. Color Research and Applications, 27 (2), 108-115.

Hajnal, J.V., Bydder, M., Atkinson, D., Larkman, D.J., Hill, D.L.G. (2002). Data correction using SMASH navigation of k-space. Magnetic Resonance Materials in Biology, Physics and Medicine (MAGMA), 15 (S1), 53-.

Hallpike, L., Hawkes, D.J. (2002). Medical image registration: An overview. Imaging, 14 (6), 455-463. doi:10.1259/img.14.6.140455

Hartkens, T., Hill, D.L.G., Castellano-Smith, A.D., Hawkes, D.J., Maurer, C.R., Martin, A.J., ...Truwit, C.L. (2002). Using points and surfaces to improve voxel-based non-rigid registration.

Hawkes, D.J., Spendley, D.G., Alfaham, M. (2002). Hypothesis waiting for proof: unwrapping neonates for transfer. ARCH DIS CHILD FETAL NEONATAL ED, 87 (359-2998 (Print), 3), F232-.

Hebden, J.C., Bland, T., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical Tomography of the Breast using a 32-Channel Time-Resolved Imager.

Hebden, J.C., Bland, T., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical tomography of the breast using a 32-channel time-resolved imager.

Hebden, J.C., Gibson, A., Yusof, R.M., Everdell, N., Hillman, E.M.C., Delpy, D.T., ...Wyatt, J.S. (2002). Three-dimensional optical tomography of the premature infant brain. Physics in Medicine and Biology, 47 (23), 4155-4166. doi:10.1088/0031-9155/47/23/303

Hebden, J.C., Hillman, E.M.C., Gibson, A., Everdell, N., Yusof, R.M., Delpy, D.T., ...Austin, J.H. (2002). .

Hill, D.L.G., Hajnal, J.V., Rueckert, D., Smith, S.M., Hartkens, T., McLeish, K. (2002). A dynamic brain atlas.

Hill, D.L., Surrey, M.W., Danzer, H.C. (2002). Is gender selection an appropriate use of medical resources?. J ASSIST REPROD GENET, 19 (058-0468 (Print), 9), 438-439.

Hillman, E.M.C., Arridge, S.R., Hebden, J.C., Delpy, D.T. (2002). .

Hipwell, J.H., Penney, G.P., Cox, T.C., Byrne, J.V., Hawkes, D.J. (2002). 2D-3D intensity based registration of DSA and MRA – A comparison of similarity measures.

Holden, M., Schnabel, J.A., Hill, D.L. (2002). Quantification of small cerebral ventricular volume changes in treated growth hormone patients using nonrigid registration. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 10), 1292-1301.

Holden, M., Schnabel, J.A., Hill, D.L.G. (2002). Quantification of small cerebral ventricular volume changes in treated growth hormone patients using nonrigid registration. IEEE Transactions on Medical Imaging, 21 (10), 1292-1301. doi:10.1109/TMI.2002.806281

Hutton, T.J., Buxton, B.F., Hammond, P. (2002). Estimating Average Growth Trajectories in Shape-Space using Kernel Smoothing.

Hutton, T.J., Buxton, B.F., Hammond, P. (2002). .

Jannin, P., Fitzpatrick, J.M., Hawkes, D.J., Pennec, X., Shahidi, R., Vannier, M.W. (2002). Validation of medical image processing in image-guided therapy. IEEE Transactions on Medical Imaging, 21 (12), 1445-1449. doi:10.1109/TMI.2002.806568

Jannin, P., Fitzpatrick, J.M., Hawkes, D.J., Pennec, X., Shahidi, R., Vannier, M.W. (2002). Validation of medical image processing in image-guided therapy. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 12), 1445-1449.

Jansons, K.M., Alexander, D.C. (2002). Spin echo attenuation to diffusion density: a general inversion for measurements on a sphere.

Jones, D.K., Alexander, D.C., Williams, S.C.R., Howard, R.J. (2002). Visualizing inter-subject coherence of axonal fiber orientation by diffusion tensor MRI.

Jones, D.K., Catani, M., Alexander, D.C., Howard, R.J. (2002). Diffusion tensor fiber tractography on a population averaged brain.

Jones, D.K., Griffin, L.D., Alexander, D.C., Catani, M., Horsfield, M.A., Howard, R., Williams, S.C.R. (2002). Spatial normalization and averaging of diffusion tensor MRI data sets. NeuroImage, 17 (2), 592-617. doi:10.1016/S1053-8119(02)91148-1

Jones, D.K., Griffin, L.D., Alexander, D.C., Williams, S.C.R., Howard, R.J. (2002). Characterising a population distribution of diffusion tensors.

Langdon, W.B., Barrett, S.J., Buxton, B.F. (2002). Combining decision trees and neural networks for drug discovery.

McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Alison Noble, J., Byrne, J.V., Cox, T. (2002). A comparison of 2D-3D intensity-based registration and feature-based registration for neurointerventions.

McLeish, K., Hill, D.L., Atkinson, D., Blackall, J.M., Razavi, R. (2002). A study of the motion and deformation of the heart due to respiration. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 9), 1142-1150. doi:10.1109/TMI.2002.804427

McLeish, K., Hill, D.L.H., Atkinson, D., Blackall, J.M., Razavi, R.S. (2002). A Study of the Motion and Deformation of the Heart due to Respiration.

Miquel, M.E., Atkinson, D., Clarck, L., Chandrashekara, R., Rueckert, D., Hill, D.L.G., Razavi, R.S. (2002). Non-invasive measurement of left ventricular pressure during systolic ejection period using MR function and tagged images.

Noble, N.M.I., Hill, D.L.G., Breeuwer, M., Schnabel, J.A., Hawkes, D.J., Gerritsen, F.A., Razavi, R. (2002). Myocardial delineation via registration in a polar coordinate system.

Oliveira, J., Buxton, B.F. (2002). Non-linear Simplification of Scanned Models.

Penney, G.P., Little, J.A., Weese, J., Hill, D.L.G., Hawkes, D.J. (2002). Deforming a preoperative volume to represent the intraoperative scene.. Computer Aided Surgery, 7 (2), 63-73. doi:10.1002/igs.10034

Penney, G.P., Little, J.A., Weese, J., Hill, D.L.G., Hawkes, D.J. (2002). Deforming a preoperative volume to represent the intraoperative scene. Computer Aided Surgery, 7 (2), 63-73. doi:10.1002/igs.10034

Penney, G.P., Little, J.A., Weese, J., Hill, D.L., Hawkes, D.J. (2002). Deforming a preoperative volume to represent the intraoperative scene. COMPUT AIDED SURG, 7 (092-9088 (Print), 2), 63-73.

Rhode, K., Lambrou, T., Seifalian, A.M., Hawkes, D.J. (2002). In-vitro validation of a novel model-based approach to the measurement of arterial blood flow waveforms from dynamic digital x-ray images.

Ruiz, M., Buxton, B.F., Douros, I., Treleaven, P.C. (2002). Web-based Software Tools for 3D Body Database Access and Shape Analysis.

Schnabel, J.A., Tanner, C., Castellano-Smith, A.D., Degenhard, A., Hayes, C., Leach, M.O., ...Hawkes, D.J. (2002). Finite element based validation of non-rigid registration using single- and multi-level free-form deformations: Application to contrast-enhanced MR mammography. Proceedings of SPIE - The International Society for Optical Engineering, 4684 I 550-561. doi:10.1117/12.467197

Southall, B., Hague, T., Marchant, J.A., Buxton, B.F. (2002). An Autonomous Crop Treatment Robot: Part I. A Kalman Filter Model for Localisation and Crop/Weed Classification. International Journal of Robotics Research, 21 (1), 61-74. doi:10.1177/027836402320556485

Tanner, C., Schnabel, J.A., Castellano-Smith, A.D., Sonoda, L.I., Hill, D.L., Hawkes, D.J., ...Hose, D.R. (2002). Comparison of biomechanical breast models: a case study.

Tanner, C., Schnabel, J.A., Degenhard, A., Castellano-Smith, A.D., Hayes, C., Leach, M.O., ...Hawkes, D.J. (2002). Validation of volume-preserving non-rigid registration: Application to contrast-Enhanced MR-mammography.

Ye, X., Noble, J.A., Atkinson, D. (2002). 3D Freehand Echocardiography for Automatic Left Ventricle Reconstruction and Analysis based on Multiple Acoustic Windows. IEEE Transactions on Medical Imaging, 21 (9), 1051-1058. doi:10.1109/TMI.2002.804436

2001

(2001). Simultaneous imaging and optode calibration with diffuse optical tomography. Optics express, 8 (5), 263-270.

(2001). Drug design by machine learning: support vector machines for pharmaceutical data. Computers and Chemistry, 26 (1), 4-15.

(2001). Data fusion by intelligent classifier combination. Measurement and Control, 34 (8), 235-239.

(2001). Three dimensional time-resolved optical tomography of a conical breast phantom. Applied Optics, 40 3278-3287.

(2001). Support vector machines in combinatorial chemistry. Measurement and Control, 34 (8), 235-239.

Alexander, D.C., Buxton, B.F. (2001). Statistical modelling of colour data. International Journal of Computer Vision, 44 (2), 87-109. doi:10.1023/A:1011870913626

Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2001). An algorithm for preservation of orientation during non-rigid warps of DT-MR images.

Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2001). Spatial transformations of diffusion tensor magnetic resonance images. IEEE Transactions on Medical Imaging, 20 (11), 1131-1139. doi:10.1109/42.963816

Andersson-Engels, S., Kaschke, M.F., Arridge, S.R., Fujimoto, J.G. (2001). Proceedings of SPIE - The International Society for Optical Engineering: Introduction.

Atkinson, D., Burcher, M., Declerck, J., Noble, J.A. (2001). Respiratory Motion Compensation for 3D Freehand Echocardiography. Ultrasound in Medicine and Biology, 27 (12), 1615-1620. doi:10.1016/S0301-5629(01)00483-5

Atkinson, D., Calamante, F., Hill, D.L.G., Connelly, A. (2001). Two dimensional navigator echo correction in DWI: assessment of the use of multiple reacquisition at high b-value.

Atkinson, D., Hill, D.L.G. (2001). Reconstruction After Irregular and Under Sampling Due to Rotational Motion.

Atkinson, D., Hill, D.L.G. (2001). Automatic Motion Correction Using Prior Knowledge.

Batchelor, P.G., Atkinson, D., Hill, D.L.G. (2001). Reconstruction of Tensor and Vector Data from Diffusion Tensor MRI.

Batchelor, P.G., Hill, D.L.G., Calamante, F., Atkinson, D. (2001). Study of Connectivity in the Brain Using the Full Diffusion Tensor from MRI.

Blackall, J.M., King, A.P., Penney, G.P., Adam, A., Hawkes, D.J. (2001). A Statistical Model of Respiratory Motion and Deformation of the Liver.

Brostow, G.J., Essa, I. (2001). Image-based motion blur for stop motion animation.

Brostow, G.J., Essa, I. (2001). Image-based motion blur for stop motion animation.

Burbidge, R., Buxton, B.F. (2001). An introduction to support vector machines for data mining.

Burbidge, R., Trotter, M., Buxton, B.F., Holden, S. (2001). STAR - Sparsity Through Automated Rejection.

Buxton, B.F., Langdon, W.B., Barrett, S.J. (2001). Data fusion by intelligent classifier combination. MEASUREMENT & CONTROL, 34 (8), 229-234. doi:10.1177/002029400103400802

Castellano-Smith, A.D., Hartkens, T., Schnabel, J., Hose, D.R., Liu, H., Hall, W.A., ...Hill, D. (2001). Constructing patient specific models for correcting intraoperative brain deformation.

Clarkson, M.J., Rueckert, D., Hill, D.L.G., Hawkes, D.J. (2001). Using photo-consistency to register 2D optical images of the human face to a 3D surface model.. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23 (11), 1266-1280.

Coulon, O., Alexander, D.C., Arridge, S.R. (2001). A regularization scheme for diffusion tensor magnetic resonance images.

Coulon, O., Alexander, D.C., Arridge, S.R. (2001). Principal diffusion direction field regularization for diffusion tensor magnetic resonance images.

Coulon, O., Alexander, D.C., Arridge, S.R. (2001). Tensor field regularisation for DT-MR images.

Coulon, O., Parker, G.J.M., Hickman, S.J., Arridge, S.R. (2001). Quantification of spinal cord atrophy via an active surface model.

Degenhard, A., Tanner, C., Hayes, C., Hawkes, D.J., Leach, M.O. (2001). Half fourier acquisition applied to time series analysis of contrast agent uptake.

Degenhard, A., Tanner, C., Hayes, C., Hawkes, D.J., Leach, M.O. (2001). Pre-processed image reconstruction applied to breast and brain MR imaging. PHYSIOL MEAS, 22 (967-3334 (Print), 3), 589-604.

Dehghani, H., Hillman, E.M.C., Schweiger, M., Arridge, S.R., Delpy, D.T. (2001). Optical Tomography of a 3D Multi Layered Head Model. Proceedings of SPIE, 4250 45-52.

Dehmeshki, J., Ruto, A.C., Arridge, S., Silver, N.C., Miller, D.H., Tofts, P.S. (2001). Analysis of MTR histograms in multiple sclerosis using principal components and multiple discriminant analysis. Magnetic Resonance in Medicine, 46 (3), 600-609.

Edwards, P.J., Hawkes, D.J., Penney, G.P., Clarkson, M.J. (2001). Guiding Therapeutic Procedures. In Hajnal, J.V., Hawkes, D.J., Hill, D.L.G. (Eds.), Medical image registration. (pp. 253-278). CRC.

Edwards, P.J., Hawkes, D.J., Penney, G.P., Clarkson, M.J. (2001). Guiding Therapeutic Proceedures. In Hajnal, J.V., Hill, D.L.G., Hawkes, D.J. (Eds.), Medical Image Registration. (pp. 253-278). CRC.

Griffin, L.D. (2001). Similarity of psychological and physical colour space shown by symmetry analysis. Color Research and Applications, 26 (2), 151-157.

Griffin, L.D. (2001). Histograms of infinitesimal neighbourhoods.

Hajnal, J.V., Hill, D.L.G., Hawkes, D.J. (2001). Introduction. In Medical Image Registration. (pp. 1-10). .

Hajnal, J.V., Hill, D.L.G., Hawkes, D.J. (2001). View of the future. In Medical Image Registration. (pp. 363-368). .

Hawkes, D.J. (2001). Registration methodology: Introduction. In Medical Image Registration. (pp. 11-38). .

Hebden, J.C., Veenstra, H., Dehghani, H., Hillman, E.M.C., Schweiger, M., Arridge, S.R., Delpy, D.T. (2001). Three-dimensional time-resolved optical tomography of a conical breast phantom. Applied Optics, 40 (19), 3278-3287.

Hickman, S., Coulon, O., Parker, G.J., Barker, G.J., Stevenson, V.L., Chard, D.T., ...Miller, D.H. (2001). Cervical spinal cord volume estimation using an active surface method: a amgnetic resonance imaging study in multiple sclerosis.

Hill, D.L., Batchelor, P.G., Holden, M., Hawkes, D.J. (2001). Medical image registration. PHYS MED BIOL, 46 (031-9155 (Print), 3), R1-45.

Hill, D.L., Batchelor, P.G., Holden, M., Hawkes, D.J. (2001). Medical image registration.. Physics in Medicine and Biology, 46 (3), doi:10.1088/0031-9155/46/3/201

Hill, D.L.G., Batchelor, P.G. (2001). Registration Methodology-Algorithms,. In Hajnal, J., Hill, D.L.G., Hawkes, D. (Eds.), Medical Image Registration,. CRC.

Hill, D.L.G., Batchelor, P.G., Holden, M., Hawkes, D.J. (2001). Medical image registration. Physics in Medicine and Biology, 46 (3), doi:10.1088/0031-9155/46/3/201

Hill, D.L.G., Jarosz, J. (2001). Registration of MR and CT images for clinical applications. In Medical Image Registration. (pp. 217-232). .

Hillman, E.M.C., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T., Chance, B. (2001). Differential Imaging in Heterogeneous Media: Limitations of Linearisation Assumptions in Optical Tomography. Bellingham, 4240 327-338.

Hillman, E.M.C., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T., Schmidt, F.E.W. (2001). Time Resolved Optical Tomography of the Human Forearm. Physics in Medicine and Biology, 46 1117-1130.

Hillman, E.M., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2001). Differential imaging in heterogeneous media: limitations of linearization assumptions in optical tomography.

Holden, M., Breeuwer, M., McLeish, K., Hawkes, D.J., Keevil, S.F., Hill, D.L.G. (2001). Sources and correction of higher order geometrical distortion for serial MR brain imaging. Proceedings of SPIE - The International Society for Optical Engineering, 4322 (1), 69-78. doi:10.1117/12.431151

Holden, M., Schnabel, J.A., Hill, D.L.G. (2001). Quantifying small changes in brain ventricular volume using non-rigid registration.

Hutton, T.J., Buxton, B.F., Hammond, P. (2001). Dense surface point distribution models of the human face.

Johnson, L., EADIE, L., de Cunha, D.A., Edwards, P., Hawkes, D.J. (2001). The limits of transparent depth perception with restricted field of view: Application in an augmented reality surgical microscope.

King, A.P., Batchelor, P.G., Penney, G.P., Blackall, J.M., Hill, D.L.G., Hawkes, D.J. (2001). Estimating Sparse Deformation Fields Using Multiscale Bayesian Priors and 3-D Ultrasound.

King, A.P., Blackall, J.M., Penney, G.P., Hawkes, D.J. (2001). Tracking liver motion using 3-D ultrasound and a surface based statistical shape model.

Langdon, W.B., Barrett, S.J., Buxton, B.F. (2001). Genetic programming for combining neural networks for drug discovery.

Langdon, W.B., Barrett, S.J., Buxton, B.F. (2001). Genetic programming for combining neural networks.

Langdon, W.B., Buxton, B.F. (2001). Evolving receiver operating characteristics for data fusion.

Langdon, W.B., Buxton, B.F. (2001). Genetic programming for combining classifiers.

Langdon, W.B., Buxton, B.F. (2001). Genetic Programming for Improved Receiver Operating Characteristics.

McLeish, K., Atkinson, D., Hill, D.L.G., Keevil, S.F. (2001). Inverse MRI:Imaging a Freely Rotating Object.

Oliveira, J., Buxton, B.F. (2001). Light weight virtual humans.

Oliveira, J., Buxton, B.F. (2001). Light-weight virtual humans.

Penney, G.P., Batchelor, P.G., Hill, D.L.G., Hawkes, D.J., Weese, J. (2001). Validation of a two- to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images. Medical Physics, 28 (6), 1024-1032. doi:10.1118/1.1373400

Penney, G.P., Batchelor, P.G., Hill, D.L., Hawkes, D.J., Weese, J. (2001). Validation of a two- to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images. MED PHYS, 28 (094-2405 (Print), 6), 1024-1032.

Penney, G.P., Batchelor, P.G., Hill, D.L., Hawkes, D.J., Weese, J. (2001). Validation of a two- to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images.. Medical Physics, 28 (6), 1024-1032. doi:10.1118/1.1373400

Penney, G.P., Edwards, P.J., King, A.P., Blackall, J.M., Batchelor, P.G., Hawkes, D.J. (2001). Stochastic Iterative Closest Point Algorithm (stochastICP).

Rhode, K., Ennew, G., Lambrou, T., Seifalian, A., Hawkes, D. (2001). In-vitro validation of a novel model-based approach to the measurement of arterial blood flow waveforms from dynamic digital x-ray images.

Riley, J.D., Arridge, S.R., Chrysanthou, Y., Dehghani, H., Hillman, E.M. (2001). The radiosity diffusion model in 3D.

Ripoll, J., Nieto-Vesperinas, M., Arridge, S.R. (2001). Effect of roughness in nondiffusive regions within diffusive media. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 18 (4), 940-947. doi:10.1364/JOSAA.18.000940

Rösch, P., Mohs, T., Netch, T., Quist, M., Penney, G.P., Hawkes, D.J., Weese, J. (2001). Template selection and rejection for robust non-rigid 3D registration in the presence of large deformations. Proceedings of SPIE - The International Society for Optical Engineering, 4322 (1), 545-556. doi:10.1117/12.431128

Schnabel, J.A., Rueckert, D., Quist, M., Blackall, J.M., Castellano-Smith, A.D., Hartkens, T., ...Truwit, C.L. (2001). A generic framework for non-rigid registration based on non-uniform multi-level free-form deformations.

Schnabel, J.A., Tanner, C., Smith, A.D.C., Leach, M.O., Hayes, C., Degenhard, A., ...Hawkes, D.J. (2001). Validation of non-rigid registration using finite element methods.

Schweiger, M., Arridge, S.R. (2001). Fast 3D image reconstruction in optical tomography using coarse-gain parallelization strategy.

Tagliati, E., Griffin, L.D. (2001). Features in scale space: progress on the 2D 2nd order jet.

Tanner, C., Degenhard, A., Schnabel, J.A., Smith, A.C., Hayes, C., Sonoda, L.I., ...Hawkes, D.J. (2001). A method for the comparison of biomechanical breast models.

Wickramaratna, J., Holden, S.B., Buxton, B.F. (2001). Performance degradation in boosting.

2000

Alexander, D.C., Gee, J.C. (2000). Elastic matching of diffusion tensor images. Computer Vision and Image Understanding, 77 (2), 233-250.

Alexander, D.C., Gee, J.C. (2000). Spatial transformations for registration of DT-MRIs.

Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2000). Techniques for spatial normalisation of diffusion tensor images.

Arridge, S.R. (2000). Linear and non-linear methods in optical tomography.

Arridge, S.R., Dehghani, H., Schweiger, M., Okada, E. (2000). The finite element model for the propagation of light in scattering media: a direct method for domains with nonscattering regions. Medical Physics, 27 (1), 252-264.

Arridge, S.R., Hebden, J.C., Schweiger, M., Schmidt, F.E., Fry, M.E., Hillman, E.M., ...Delpy, D.T. (2000). A method for three-dimensional time-resolved optical tomography. International Journal of Imaging Systems and Technology, 11 2-11.

Arridge, S.R., Hebden, J.C., Schwinger, M., Schmidt, F.E.W., Fry, M.E., Hillman, E.M.C., ...Delpy, D.T. (2000). A method for three-dimensional time-resolved optical tomography. INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY, 11 (1), 2-11.

Atkinson, D., Porter, D.A., Hill, D.L., Calamante, F., Connelly, A. (2000). Sampling and reconstruction effects due to motion in diffusion-weighted interleaved echo planar imaging. Magnetic Resonance in Medicine, 44 (1), 101-109. doi:10.1002/1522-2594(200007)44:1<101::aid-mrm15>3.0.co;2-s

Blackall, J.M., Rueckert, D., Maurer, C.R., Penney, G.P., Hill, D.L.G., Hawkes, D.J. (2000). An image registration approach to automated calibration for freehand 3D ultrasound.

Castellano Smith, A.D., Batchelor, P.G., Chitnis, X.A., Hill, D.L.G., Sharma, T. (2000). Cortical Shape Differences between Schizophrenics and Normals.

Castellano Smith, A.D., Batchelor, P.G., Hill, D.L.G., Dean, A.D., Cox, T., Hawkes, D.J. (2000). The Shape of the Developing Foetal Cortex from MR Images.

Castellano Smith, A.D., Batchelor, P.G., Hill, D.L.G., Dean, A.D., Cox, T., Hawkes, D.J. (2000). he Shape of the Developing Foetal Cortex from MR Images.

Clarkson, M.J., Rueckert, D., Hill, D.L., Hawkes, D.J. (2000). Multiple 2D video/3D medical image registration algorithm.

Coulon, O., Arridge, S.R. (2000). Dual echo MR image processing using multi-spectral probabilistic diffusion coupled with shock filters.

Dehghani, H., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Optical tomography in the presence of void regions. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 17 (9), 1659-1670. doi:10.1364/JOSAA.17.001659

Dehghani, H., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Image reconstruction in the presence of a void region.

Dehmeshki, J., Ruto, A.C., Parker, G.J.M., Arridge, S., Miller, D.H., Tofts, P.S. (2000). Detection and classification of MS using magnetisation transfer ratio images.

Denton, E.R.E., Holden, M., Christ, E., Jarosz, J.M., Russell-Jones, D., Goodey, J., ...Hill, D.L.G. (2000). The identification of cerebral volume changes in treated growth hormone-deficient adults using serial 3D MR image processing. Journal of Computer Assisted Tomography, 24 (1), 139-145. doi:10.1097/00004728-200001000-00025

Denton, E.R., Holden, M., Christ, E., Jarosz, J.M., Russell-Jones, D., Goodey, J., ...Hill, D.L. (2000). The identification of cerebral volume changes in treated growth hormone-deficient adults using serial 3D MR image processing. J COMPUT ASSIST TOMOGR, 24 (363-8715 (Print), 1), 139-145.

Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (2000). Design and evaluation of a system for microscope-assisted guided interventions (MAGI). IEEE TRANSACTIONS ON MEDICAL IMAGING, 19 (11), 1082-1093. doi:10.1109/42.896784

Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (2000). Design and evaluation of a system for microscope-assisted guided interventions (MAGI). IEEE TRANSACTIONS ON MEDICAL IMAGING, 19 (11), 1082-1093. doi:10.1109/42.896784

Griffin, L.D. (2000). Mean, median and mode filtering of images. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 456 (2004), 2995-3004.

Griffin, L.D. (2000). Psychological Colour Space is Physical Colour Space.

Hansard, M.E., Buxton, B. (2000). Parametric view-synthesis.

Hawkes, D.J., Rueckert, D., Clarkson, M.J. (2000). Method of 3D/2D Registration of optical views to a surface model. WO0159708 (A1).

Hebden, J.C., Schmidt, F.E.W., Hillman, E.M.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). .

Hebden, J.C., Schmidt, F.E.W., Hillman, E.M.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Optical tomography of the human forearm.

Hill, D.L., Smith, A.D., Simmons, A., Maurer, C.R., Jr, C., T C, E., ...C, E. (2000). Sources of error in comparing functional magnetic resonance imaging and invasive electrophysiological recordings. J NEUROSURG, 93 (022-3085 (Print), 2), 214-223.

Hillman, E.M.C., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Fry, M.E., Schweiger, M., Delpy, D.T. (2000). Initial clinical testing of the UCL 32 channel time-resolved instrument for optical tomography.

Hillman, E.M.C., Hebden, J.C., Schmidt, F.E.W., Arridge, S.R., Schweiger, M., Dehghani, H., Delpy, D.T. (2000). Calibration techniques and datatype extraction for time-resolved optical tomography. REVIEW OF SCIENTIFIC INSTRUMENTS, 71 (9), 3415-3427. doi:10.1063/1.1287748

Hillman, E.M., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Fry, M.E., Schweiger, M., Delpy, D.T. (2000). Intitial clinical testing of the UCL 32 channel time-resolved instrument for optical tomography.

Hillman, E.M., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Schweiger, M., Dehghani, H., Delpy, D.T. (2000). Calibration techniques and datatype extraction for time-resolved optical tomography. Review of Scientific Instruments, 71 (9), 3415-3427.

Holden, M., Hill, D.L., Denton, E.R., Jarosz, J.M., Cox, T.C., Rohlfing, T., ...Hawkes, D.J. (2000). Voxel similarity measures for 3-D serial MR brain image registration. IEEE TRANS MED IMAGING, 19 (278-0062 (Print), 2), 94-102.

Kashio, Y., Ono, M., Firbank, M., Schweiger, M., Arridge, S.R., Okada, E. (2000). Investigation of the relationship between position of brain activity and change in optical density for NIR imaging.

King, A.P., Blackall, J.M., Penney, G.P., Edwards, P.J., Hill, D.L.G., Hawkes, D.J. (2000). Bayesian estimation of intra-operative deformation for image-guided surgery using 3-D ultrasound.

King, A.P., Edwards, P.J., Maurer, C.R., Cunha, D.A.D., Gaston, R.P., Clarkson, M., ...Strong, A.J. (2000). Stereo Augmented Reality in the Surgical Microscope. Presence: Teleoperators and Virtual Environments, 9 360-368. doi:10.1162/105474600566862

Kolehmainen, V., Arridge, S.R., Vauhkonen, M., Kaipio, J.P. (2000). Simultaneous reconstruction of internal tissue region boundaries and coefficients in optical diffusion tomography. Physics in Medicine and Biology, 45 (11), 3267-3284.

Kolehmainen, V., Vauhkonen, M., Kaipio, J.P., Arridge, S.R. (2000). Recovery of piecewise constant coefficients in optical diffusion tomography. Optics express, 7 (13), 468-480.

O'Brien, J.F., Bodenheimer, R.E., Brostow, G.J., Hodgins, J.K. (2000). Automatic joint parameter estimation from magnetic motion capture data.

Ono, M., Kashio, Y., Schweiger, M., Dehghani, H., Arridge, S.R., Firbank, M., Okada, E. (2000). Topographic distribution of photon measurement density functions on the brain surface by hybrid radiosity-diffusion method. OPTICAL REVIEW, 7 (5), 426-431. doi:10.1007/s10043-000-0426-x

Pineda, A.R., Barrett, H.H., Arridge, S.R. (2000). Spatially varying detectability for optical tomography.

Rhode, K., Lambrou, T., Hawkes, D.J., Hamilton, G., Seifalian, A.M. (2000). Validation of an optical flow algorithm to measure blood flow waveforms in arteries using dynamic digital x-ray images. Proceedings of SPIE, 1 (24 (Sp), 1414-1425.

Riley, J., Dehghani, H., Schweiger, M., Arridge, S.R., Ripoli, J., Nieto-Vesperinas, M. (2000). 3D optical tomography in the presence of void regions. Optics express, 7 (13), 462-467.

Ripoll, J., Arridge, S.R., Dehghani, H., Nieto-Vesperinas, M. (2000). Boundary conditions for light propagation in diffusive media with nonscattering regions. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 17 (9), 1671-1681.

Ripoll, J., Arridge, S.R., Nieto-Vesperinas, M. (2000). Effect of roughness in non-diffusive regions within diffusive media.

Rueckert, D., Clarkson, M.J., Hill, D.L.G., Hawkes, D.J. (2000). Non-rigid registration using higher-order mutual information.

Schmidt, F.E.W., Hebden, J.C., Hillman, E.M.C., Fry, M.E., Schweiger, M., Delpy, D.T., ...Dehghani, H. (2000). Multiple-slice imaging of a tissue-equivalent phontom by use of time-resolved optical tomography. Applied Optics, 39 (19), 3380-3387.

Southall, B., Buxton, B.F., Marchant, J.A., Hague, T. (2000). On the performance characterisation of image segmentation algorithms: a case study.

Tanner, C., Schnabel, A., Chung, D., Clarkson, M.J., Rueckert, D., Hill, D.L.G., Hawkes, D.J. (2000). Volume and shape preservation of enhancing lesions when applying non-rigid registration to a time series of contrast enhancing MR breast images.

Valdivieso-Casique, M., Arridge, S. (2000). A comparison of the use of different image features in a non linear registration algorithm.

1999

(1999). Recovery of region boundaries of piecewise constant coefficients of an elliptic PDE from boundary data. Inverse Problems, 15 1375-1391.

(1999). Very low bit rate video compression using linear combination of 2D face views and principal components analysis. Image and Vision Computing, 17 (14), 1031-1051.

(1999). A survey of hierarchical non-linear medical image registration. Pattern Recognition, 32 129-149.

(1999). Optical tomography in medical imaging. Topical Review Inverse Problems, 15 R14-R93.

Alexander, D.C. (1999). Advances in daylight statistical colour modelling.

Alexander, D.C., Buxton, B.F. (1999). An empirical comparison of statistical chromaticity models.

Alexander, D.C., Gee, J., Bajcsy, R. (1999). Similarity measures for matching diffusion tensor images.

Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images.

Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Transformation of and similarity measures for diffusion tensor MRIs.

Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Elastic matching of diffusion tensor MRIs.

Alexander, D., Gee, J., Bajcsy, R. (1999). Elastic matching of diffusion tensor MRIs. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1 244-249.

Amos, G., Buxton, B.F. (1999). Positioning human body models with Lagrange multipliers.

Arridge, S.R. (1999). Optical tomography in medical imaging. INVERSE PROBLEMS, 15 (2), R41-R93. doi:10.1088/0266-5611/15/2/022

Arridge, S.R., Schweiger, M. (1999). A General Framework for Iterative Reconstruction Algorithms in Optical Tomography, Using a Finite Element Method. In Boergers, C., Natterer, F. (Eds.), Computational Radiology and Imaging - Therapy and Diagnostics. (pp. 45-70). New York, USA: Springer.

Atkinson, D., Hill, D.L., Stoyle, P.N., Summers, P.E., Clare, S., Bowtell, R., Keevil, S.F. (1999). Automatic compensation of motion artifacts in MRI. Magnetic Resonance in Medicine, 41 163-170. doi:10.1002/(SICI)1522-2594(199901)41:1<163::aid-mrm23>3.0.CO;2-9

Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G. (1999). Proper Scales of Shapes-A Curved Scale Space.

Batchelor, P., Smith, A.C., Hill, D.G., Dean, A.D., Cox, T., Hawkes, D.J. (1999). The folding of the human foetal brain. NeuroImage, 9 (6 PART II),

Brostow, G.J., Essa, I.A. (1999). Motion based Decompositing of Video..

Casique, M.V., Arridge, S.R. (1999). Non-linear Registration using a Finite Element Method..

Clarkson, M.J., Rueckert, D., Hill, D.L., Hawkes, D.J. (1999). Registration of multiple video images to preoperative CT for image-guided surgery.

Clarkson, M.J., Rueckert, D., King, A.P., Edwards, P.J., Hill, D.L.G., Hawkes, D.J. (1999). Registration of Video Images to Tomographic Images by Optimising Mutual Information Using Texture Mapping.

Dehghani, H., Delpy, D.T., Arridge, S.R. (1999). Photon migration in non-scattering tissue and the effects on image reconstruciton. Physics in Medicine and Biology, 44 (12), 2897-2906.

Dekker, L., Douros, I., Buxton, B.F., Treleaven, P. (1999). Building symbolic information for 3-D human body modelling from range data.

Denton, E.R.E., Sonoda, L.I., Rueckert, D., Rankin, S.C., Hayes, C., Leach, M.O., ...Hawkes, D.J. (1999). Comparison and evaluation of rigid, affine, and nonrigid registration of breast MR images. Journal of Computer Assisted Tomography, 23 (5), 800-805. doi:10.1097/00004728-199909000-00031

Denton, E.R., Sonoda, L.I., Rueckert, D., Rankin, S.C., Hayes, C., Leach, M.O., ...Hawkes, D.J. (1999). Comparison and evaluation of rigid, affine, and nonrigid registration of breast MR images. J COMPUT ASSIST TOMOGR, 23 (363-8715 (Print), 5), 800-805.

Douros, I., Dekker, L., Buxton, B.F. (1999). Reconstruction of the surface of the human body from 3D scanner data using B-splines.

Douros, I., Dekker, L., Buxton, B.F. (1999). An improved algorithm for reconstruction of the surface of the human body from 3D scanner data using local B-spline patches.

Edwards, P.J., King, A.P., Hawkes, D.J., Fleig, O., Maurer, C.R., Jr, H., ...R P, C. (1999). Stereo augmented reality in the surgical microscope. STUD HEALTH TECHNOL INFORM, 62 (926-9630 (Print)), 102-108.

Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (1999). Design and evaluation of a system for microscope-assisted guided interventions (MAGI).

Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (1999). Design and evaluation of a system for microscope-assisted guided interventions (MAGI).

Gleeson, M.J., Strong, A.J., Edwards, P.E., Fenlon, M., King, A., Chandra, S., Hawkes, D.J. (1999). Image injection neuronavigation using continuous tracking of the patient and microscope during skull base surgery. Skull Base Surgery, 9 (SUPPL. 2), 16-.

Griffin, L.D. (1999). Partitive Mixing of Images: a tool for investigating pictorial perception. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 16 (12), 2825-2835.

Griffin, L.D. (1999). Empirical assessment of colour symmetries. Behavioral and Brain Sciences, 22 (6), 952-953. doi:10.1017/S0140525X99312218

Hebden, J.C., Schmidt, F.E.W., Fry, M.E., Schweiger, M., Hillman, E.M.C., Delpy, D.T., Arridge, S. (1999). Simultaneous reconstruction of absorption and scattering images using multi-channel measurement of purely temporal data. Optics Letters, 24 534-536.

Hill, D.L.G., Maurer, C.R., Martin, A.J., Sabanathan, S., Hall, W.A., Hawkes, D.J., ...Truwit, C.L. (1999). Assessment of intraoperative brain deformation using interventional mr imaging.

Holden, M., Denton, E.R.E., Jarosz, J.M., Cox, T.C.S., Studholme, C., Hawkes, D.J., Hill, D.L.G. (1999). Detecting small anatomical change with 3D serial MR subtraction images. Proceedings of SPIE - The International Society for Optical Engineering, 3661 (I), 44-55.

Holden, M., Hill, D.L.G., Denton, E.R.E., Jarosz, J.M., Cox, T.C.S., Hawkes, D.J. (1999). Voxel similarity measures for 3D serial MR brain image registration.

Kennedy, D.M., Buxton, A.F., Gilby, J.H. (1999). Application of the total least squares procedure to linear view interpolation.

King, A.P., Edwards, P.J., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Fenlon, M.R. (1999). A system for microscope-assisted guided interventions.

King, A.P., Edwards, P.J., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Fenlon, M.R. (1999). A system for microscope-assisted guided interventions.

Kolehmainen, V., Arridge, S.R., Lionheart, W.R.B., Kaipio, J.P. (1999). Recovery of organ boundaries in Optical Tomography.

Lester, H., Arridge, S.R., Jansons, K.M., Lemieux, L., Hajnal, J.V., Oatridge, A. (1999). Non-linear registration with the variable viscosity fluid algorithm.. Lecture Notes in Computer Science, 1613 238-251.

Lionheart, W.R.B., Arridge, S.R., Schweiger, M., Vauhkonen, M., Kaipio, J.P. (1999). Electrical impedance and diffuse optical tomography reconstruction software.

Maurer, C.R., Gaston, R.P., Hill, D.L.G., Gleeson, M.J., Taylor, M.G., Fenlon, M.R., ...Hawkes, D.J. (1999). AcouStick: A tracked a-mode ultrasonography system for registration in image-guided surgery.

Oliveira, J., Buxton, B.F. (1999). Creating light-weight virtual humans for virtual environments.

Richards, A., Edwards, P., King, A., Hill, D., Gaston, R., Maurer, C., ...Hawkes, D.H. (1999). A locking dental registration stent for use in image guided surgery of the anterior and lateral skull base. Skull Base Surgery, 9 (SUPPL. 2), 32-.

Rueckert, D., Sonoda, L.I., Denton, E., Rankin, S., Hayes, C., Leach, M.O., ...Hawkes, D.J. (1999). Comparison and evaluation of rigid and non-rigid registration of breast MR images. Proceedings of SPIE - The International Society for Optical Engineering, 3661 (I), 78-88.

Rueckert, D., Sonoda, L.I., Hayes, C., Hill, D.L., Leach, M.O., Hawkes, D.J. (1999). Nonrigid registration using free-form deformations: application to breast MR images. IEEE TRANS MED IMAGING, 18 (278-0062 (Print), 8), 712-721.

Rueckert, D., Sonoda, L.I., Hayes, C., Hill, D.L., Leach, M.O., Hawkes, D.J. (1999). Nonrigid registration using free-form deformations: application to breast MR images.. IEEE transactions on medical imaging, 18 (8), 712-721. doi:10.1109/42.796284

Ruff, C.F., Hughes, S.W., Hawkes, D.J. (1999). Volume Estimation from Sparse Planar Images using Deformable Models. Image and Vision Computing, 17 (8), 559-565.

Schnabel, J.A., Lemieux, L., Wieshmann, U.C., Arridge, S.R. (1999). Measurement of hippocampal volume changes in serial MRI scans.

Schweiger, M., Arridge, S.R. (1999). Application of temporal filters to time resolved data in optical tomography. PHYSICS IN MEDICINE AND BIOLOGY, 44 (7), 1699-1717. doi:10.1088/0031-9155/44/7/310

Schweiger, M., Arridge, S.R. (1999). Optical tomographic reconstruction in a complex head model using a priori region boundary information. PHYSICS IN MEDICINE AND BIOLOGY, 44 (11), 2703-2721. doi:10.1088/0031-9155/44/11/302

Schweiger, M., Zhukov, L., Arridge, S.R., Johnson, C.R. (1999). Optical tomography using the SCIRun problem solving environment: Preliminary results for three-dimensional geometries and parallel processing. OPTICS EXPRESS, 4 (8), 263-269. doi:10.1364/OE.4.000263

Schweiger, M., Zhukov, L., Arridge, S.R., Johnson, C.R. (1999). Optical tomography using the SCIRun problem solving environment: Preliminary results for three-dimensional geometries and parallel processing. Optics Express, 4 (8), 263-269. doi:10.1364/OE.4.000263

Studholme, C., Hill, D.L.G., Hawkes, D.J. (1999). An overlap invariant entropy measure of 3D medical image alignment .. Pattern Recognition, 32 71-86.

Valdivieso-Casique, M., Arridge, S. (1999). Hierarchical non-linear image deformation with the use of finite element transformations.

1998

(1998). Active Shape Focusing. Image Vision Computing, 17 (5/6), 419-428.

(1998). Comparison of 2D and 3D reconstruction methods in optical tomography. Applied Optics, 37 (31), 7419-7428.

(1998). Non-uniqueness in diffusion-based optical tomography. Optics Letters, 23 882-884.

Arridge, S.R., Schweiger, M. (1998). A gradient-based optimisation scheme for Optical Tomography. Optics Express, 2 (6), 213-226.

Barker, G.J., Simmons, A., Arridge, S.R., Tofts, P.S. (1998). A simple method for investigating the effects of non-uniformity of radiofrequency transmission and radiofrequency reception in MRI. BRITISH JOURNAL OF RADIOLOGY, 71 (841), 59-67. doi:10.1259/bjr.71.841.9534700

Barker, G.J., Simmons, A., Arridge, S.R., Tofts, P.S. (1998). A simple method for investigating the effects of non-uniformity of radiofrequency transmission and radiofrequency reception in MRI. British Journal of Radiology, 71 (JAN.), 59-67. doi:10.1259/bjr.71.841.9534700

Buxton, B.F., Shafi, Z., Gilby, J. (1998). Evaluation of the construction of novel views by a combination of basis views.

Chatterjee, N., Buxton, B.F. (1998). Shape modelling for drivable open terrains: some studies.

Dekker, L., Buxton, B. (1998). Automated landmarking for virtual human modelling.

Dekker, L., Khan, S., West, E., Buxton, B.F., Treleaven, P. (1998). Models for understanding the 3D human body form.

Dorward, N.L., Alberti, O., Zhao, J., Dijkstra, A., Buurman, J., Palmer, J.D., ...Thomas, D.G.T. (1998). Interactive image-guided neuroendoscopy: Development and early clinical experience. MINIMALLY INVASIVE NEUROSURGERY, 41 (1), 31-34. doi:10.1055/s-2008-1052011

Edwards, P.J., Hill, D.L., Little, J.A., Hawkes, D.J. (1998). A three-component deformation model for image-guided surgery. MED IMAGE ANAL, 2 (361-8415 (Print), 4), 355-367.

Fitzpatrick, J.M., Hill, D.L., Shyr, Y., West, J., Studholme, C., Maurer, C.R., J.r. (1998). Visual assessment of the accuracy of retrospective registration of MR and CT images of the brain. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 4), 571-585.

Fleig, O.J., Edwards, P.J., Chandra, S., Stuttler, H., Hawkes, D.J. (1998). Automated microscope calibration for image guided surgery.

Hawkes, D.J. (1998). Algorithms for radiological image registration and their clinical application.

Hawkes, D.J. (1998). Algorithms for radiological image registration and their clinical application. J ANAT, 193 ( Pt 3) (021-8782 (Print)), 347-361.

Hill, D.L.G., Maurer, C.R., Maciunas, R.J., Barwise, J.A., Fitzpatrick, J.M., Wang, M.Y. (1998). Measurement of intraoperative brain surface deformation under a craniotomy. Neurosurgery, 43 (3), 514-526. doi:10.1097/00006123-199809000-00066

Hill, D.L.G., Maurer, C.R., Studholme, C., Fitzpatrick, J.M., Hawkes, D.J. (1998). Correcting scaling errors in tomographic images using a nine degree of freedom registration algorithm. Journal of Computer Assisted Tomography, 22 (2), 317-323. doi:10.1097/00004728-199803000-00031

Hill, D.L.G., Simmons, A., Castellano Smith, A.D., Maurer, C.R., Cox, T.C.S., Elwes, R., ...Polkey, C.E. (1998). Pitfalls in comparing functional magnetic resonance imaging and invasive electrophysiology recordings.

Hill, D.L., Maurer, C.R., Jr, M., R J, B., J A, F., J M, W., M, Y. (1998). Measurement of intraoperative brain surface deformation under a craniotomy. NEUROSURGERY, 43 (148-396X (Print), 3), 514-526.

Hill, D.L., Maurer, C.R., Jr, S., C, F., J M, H., D, J. (1998). Correcting scaling errors in tomographic images using a nine degree of freedom registration algorithm. J COMPUT ASSIST TOMOGR, 22 (363-8715 (Print), 2), 317-323.

Hill, D.L., Maurer, C.R., Studholme, C., Fitzpatrick, J.M., Hawkes, D.J. (1998). Correcting scaling errors in tomographic images using a nine degree of freedom registration algorithm.. Journal of Computer Assisted Tomography, 22 (2), 317-323. doi:10.1097/00004728-199803000-00031

Koufakis, I., Buxton, B.F. (1998). Linear combination of face views for low bit rate face video compression.

Lester, H., Arridge, S.R. (1998). Nonlinear registration using a fluid model with variable viscosity. NeuroImage, 7 (4 PART II), doi:10.1016/s1053-8119(18)31569-6

Maurer, C.R., Hill, D.L.G., Maciunas, R.J., Barwise, J.A., Fitzpatrick, J.M., Wang, M.Y. (1998). Measurement of intraoperative brain surface deformation under a craniotomy.

Maurer, C.R., Hill, D.L.G., Martin, A.J., Liu, H., McCue, M., Rueckert, D., ...Hawkes, D.J. (1998). Investigation of intraoperative brain deformation using a 1.5-T interventional MR system: Preliminary results. IEEE Transactions on Medical Imaging, 17 (5), 817-825. doi:10.1109/42.736050

Maurer, C.R., Jr, H., D L, M., A J, L., H, M., M, R., ...R E, H. (1998). Investigation of intraoperative brain deformation using a 1.5-T interventional MR system: preliminary results. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 5), 817-825.

Michael Fitzpatrick, J., Hill, D.L.G., Shyr, Y., West, J., Studholme, C., Maurer, C.R. (1998). Visual assessment of the accuracy of retrospective registration of MR and CT images of the brain. IEEE Transactions on Medical Imaging, 17 (4), 571-585. doi:10.1109/42.730402

Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2-D-3-D medical image registration. IEEE TRANSACTIONS ON MEDICAL IMAGING, 17 (4), 586-595. doi:10.1109/42.730403

Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2-D-3-D medical image registration. IEEE TRANSACTIONS ON MEDICAL IMAGING, 17 (4), 586-595. doi:10.1109/42.730403

Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2D-3D medical image registration.

Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2D-3D medical image registration.

Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2-D-3-D medical image registration. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 4), 586-595.

Rueckert, D., Hayes, C., Studholme, C., Summers, P., Leach, M., Hawkes, D.J. (1998). Non-rigid registration of breast MR images using mutual information.

Schweiger, M., Arridge, S.R. (1998). Comparison of two- and three-dimensional reconstruction methods in optical tomography. APPLIED OPTICS, 37 (31), 7419-7428. doi:10.1364/AO.37.007419

Simmons, A., Arridge, S.R., Tofts, P.S., Barker, G.J. (1998). Application of the extremum stack to neurological MRI. IEEE Transactions on Medical Imaging, 17 371-382.

Smith, A.D.C., Hill, D.L.G., Hawkes, D.J., Polkey, C.E., Cox, T.C.S. (1998). Surface simplification for shape measurement - application to the human brain..

Smith, A.D.C., Hill, D.L.G., Hawkes, D.J., Polkey, C.E., Cox, T.C.S. (1998). Surface simplification for shape measurement - application to the human brain..

Southall, B., Buxton, B.F., Marchant, J. (1998). Controllability and observability: tools for Kalman filter design.

Southall, B., Marchant, J.A., Hague, T., Buxton, B.F. (1998). Model based tracking for navigation and segmentation.

Stoyle, P.N.R., Hill, D.L.G., Atkinson, D. (1998). METHOD AND APPARATUS FOR IMAGING ARTEFACT REDUCTION. WO9801828A1.

Studholme, C., Hawkes, D.J., Hill, D.L. (1998). A normalized entropy measure for multimodality image alignment.

1997

Alexander, D.C., Buxton, B. (1997). Modelling of Single Mode Distributions of Colour Data Using Directional Statistics.

Alexander, D.C., Buxton, B.F. (1997). Implementational Improvements for Active Region Models.

Arridge, S.R., Hebden, J.C. (1997). Optical imaging in Medicine II: Modelling and Reconstruction. Physics in Medicine and Biology, 42 (5), 841-853.

Arridge, S.R., Schweiger, M. (1997). Image reconstruction in optical tomography. Philosophical Transactions of the Royal Society B: Biological Sciences, 352 (1354), 717-726.

Arridge, S.R., Simmons, A. (1997). Multi-spectral probabilistic diffusion using Bayesian classification.

Arridge, S.R., Simmons, A. (1997). Multi-Spectral Probabilistic Diffusion Using Baysian Classification.

Atkinson, D., Hill, D.L.G., Stoyle, P.N.R., Summers, P.E., Keevil, S.F. (1997). An autofocus algorithm for the automatic correction of motion artifacts in MR images.

Atkinson, D., Hill, D.L.G., Stoyle, P.N.R., Summers, P.E., Keevil, S.F. (1997). An Autofocus Algorithm for the Automatic Correction of Motion Artifacts in MR Images..

Atkinson, D., Hill, D.L., Stoyle, P.N., Summers, P.E., Keevil, S.F. (1997). Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion. IEEE Transactions on Medical Imaging, 16 (6), 903-910. doi:10.1109/42.650886

Edwards, P.J., Hawkes, D.J., Hill, D., Jewell, D., Spink, R., Clmndra, S., ...Gleeson, M.J. (1997). Three dimensional image injection in the binocular operating microscope. Skull Base Surgery, 7 (SUPPL. 2), 55-.

Edwards, P.J., Hill, D.L.G., Little, J.A., Hawkes, D.J. (1997). Deformation for image guided interventions using a three component tissue model.

Edwards, P.J., Hill, D.L.G., Little, J.A., Hawkes, D.J. (1997). Deformation for image guided interventions using a three component tissue model.

Griffin, L.D. (1997). scale-imprecision space. Image and Vision Computing, 15 (5), 369-398.

Hebden, J., Arridge, S.R. (1997). Imaging through Scattering Media by the Use of an Analytical Model of Perturbation Amplitudes in the Time Domain. Applied Optics, 35 (34), 6788-6796.

Hebden, J., Arridge, S.R., Delpy, D.T. (1997). Optical Imaging in Medicine 1: Experimental Technigues. Physics in Medicine and Biology, 42 (5), 825-840.

Hill, D.L.G., Langsaeter, L.A., Poynter-Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., ...Gleeson, M.J. (1997). Feasibility study of magnetic resonance imaging-guided intranasal flexible microendoscopy. Computer Aided Surgery, 2 (5), 264-275. doi:10.1002/(SICI)1097-0150(1997)2:5<264::aid-igs2>3.0.CO;2-Y

Hill, D.L., Langsaeter, L.A., Poynter-Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., ...Gleeson, M.J. (1997). Feasibility study of magnetic resonance imaging-guided intranasal flexible microendoscopy. COMPUT AIDED SURG, 2 (092-9088 (Print), 5), 264-275.

Hill, D.L., Langsaeter, L.A., Poynter-Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., ...Gleeson, M.J. (1997). Feasibility study of magnetic resonance imaging-guided intranasal flexible microendoscopy.. Computer aided surgery : official journal of the International Society for Computer Aided Surgery, 2 (5), 264-275. doi:10.1002/(sici)1097-0150(1997)2:5<264::aid-igs2>3.0.co;2-y

Hill, D.L., Maurer, C.R., Wang, M.Y., Maciunas, R.J., Barwise, J.A., Fitzpatrick, J.M. (1997). Estimation of intraoperative brain surface movement.

Kadam, S., Roberts, G., Buxton, B. (1997). Design Patterns for Parallelizing Vision-Related Applications on Network of Workstations.

Kwee, I.W., Tanikawa, Y., Proskurin, S., Arridge, S.R., Delpy, D.T., Yamada, Y. (1997). Performance of a nullspace-MAP image reconstruction algorithm. PROC S P I E, (2979), 185-196.

Lester, H., Arridge, S.R. (1997). Summarising Fluid Registration by Thin-Plate Spline Warps with Many Landmarks.

Lester, H., Arridge, S.R. (1997). Combining Fluid Deformations and Sline Warps: Fully Automatic Non-Linear Registration witha Large Number of Landmarks.

Lester, H., Arridge, S.R. (1997). Reducing the Blurring Effects of Successive Regridding in the Fluid Warp.

Little, J.A., Hawkes, D.J. (1997). The registration of multiple medical images acquired from a single subject: Why, how, what next?. Statistical Methods in Medical Research, 6 (3), 239-265. doi:10.1177/096228029700600304

Little, J.A., Hawkes, D.J. (1997). The registration of multiple medical images acquired from a single subject: why, how, what next?. STAT METHODS MED RES, 6 (962-2802 (Print), 3), 239-265.

Little, J.A., Hill, D.L.G., Hawkes, D.J. (1997). Deformations incorporating rigid structures .. Computer Vision Image Understanding, 66 (2), 223-232.

Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Cope, M., Delpy, D.T. (1997). Theoretical and experimental investigation of near-infrared light propagation in a model of the adult head. Applied Optics, (36 (1)), 21-31.

Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Cope, M., Delpy, D.T. (1997). A Theoretical and Experimental Investigation of Near Infrared Light Propagation in a Model of the Adult Head. Applied Optics, 36 (1), 21-31.

Schnabel, J.A., Arridge, S.R. (1997). Multi-scale active shape description.

Schnabel, J.A., Arridge, S.R. (1997). Active Shape Focusing.

Schnabel, J.A., Arridge, S.R. (1997). Multi-Scale Active Shape Description.

Schnabel, J.A., Arridge, S.R. (1997). Multi-Scale Shape Description in Medical Imaging.

Schweiger, M., Arridge, S.R. (1997). Optimal data types in optical tomography. Information Processing in Medical Imaging (IPM'97 Proceedings)Lecture notes in Computer Science, 1230 71-84.

Schweiger, M., Arridge, S.R. (1997). The finite element method for the propagation of light in scattering media: Frequency domain case. MED PHYS ,, 24 (6), 895-902.

Schweiger, M., Arridge, S.R. (1997). Direct calculation with a finite-element method of the Laplace transform of the distribution of photon time of flight in tissue. APPL OPT ,, 36 (34), 9042-9049.

Strasters, K.C., Little, J.A., Buurman, J., Hill, D.L.G., Hawkes, D.J. (1997). Anatomical landmark image registration: Validation and comparison.

Studholme, C., Hill, D.L., Hawkes, D.J. (1997). Automated three-dimensional registration of magnetic resonance and positron emission tomography brain images by multiresolution optimization of voxel similarity measures. MED PHYS, 24 (094-2405 (Print), 1), 25-35.

Summers, P.E., Bhalerao, A.H., Hawkes, D.J. (1997). Multiresolution, model-based segmentation of MR angiograms. J MAGN RESON IMAGING, 7 (053-1807 (Print), 6), 950-957.

Thomas, D.G.T., Dorward, N.L., Kingsley, D., Kitchen, N.D., Palmer, J.D., Alberti, O., ...Dijkstra, A. (1997). Clinical experience with the EasyGuide Neuro navigation system.

Weese, J., Penney, G.P., Desmedt, P., Buzug, T.M., Hill, D.L.G., Hawkes, D.J. (1997). Voxel-Based 2-D/3-D registration of fluoroscopy images and CT scans for image-guided surgery. IEEE Transactions on Information Technology in Biomedicine, 1 (4), 284-293. doi:10.1109/4233.681173

Weese, J., Penney, G.P., Desmedt, P., Buzug, T.M., Hill, D.L., Hawkes, D.J. (1997). Voxel-based 2-D/3-D registration of fluoroscopy images and CT scans for image-guided surgery. IEEE TRANS INF TECHNOL BIOMED, 1 (089-7771 (Print), 4), 284-293.

West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Jr, K., ...D, C. (1997). Comparison and evaluation of retrospective intermodality brain image registration techniques. J COMPUT ASSIST TOMOGR, 21 (363-8715 (Print), 4), 554-566.

West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Kessler, R.M., ...Collignon, A. (1997). Comparison and evaluation of retrospective intermodality brain image registration techniques.

West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Kessler, R.M., ...Collignon, A. (1997). Comparison and evaluation of retrospective intermodality brain image registration techniques.

Wong, J.C.H., Studholme, C., Hawkes, D.J., Maisey, M.N. (1997). Evaluation of the limits of visual detection of image misregistration in a brain fluorine-18 fluorodeoxyglucose PET-MRI study. European Journal of Nuclear Medicine, 24 (6), 642-650. doi:10.1007/s002590050099

Wong, J.C., Studholme, C., Hawkes, D.J., Maisey, M.N. (1997). Evaluation of the limits of visual detection of image misregistration in a brain fluorine-18 fluorodeoxyglucose PET-MRI study. EUR J NUCL MED, 24 (340-6997 (Print), 6), 642-650.

1996

Alexander, D.C., Buxton, B.F. (1996). An evaluation of physically based statistical colour models for image region characterisation.

Alexander, D.C., Buxton, B.F. (1996). Physically based statistical colour models for image region characterisation.

Atkinson, D., Loh, W.H., O'Reilly, J.J., Laming, R.I. (1996). Numerical Study of 10 cm Chirped Fiber Grating Pairs for Dispersion Compensation at 10 Gbit/s over 600 km of Non-Dispersion Shifted Fiber.. IEEE Photonics Technology Letters, 8 (8), 1085-1087.

Bladin, C.F., Colchester, A.C., Hawkes, D.J., Seifalian, A.M., Iqbal, N., Hardingham, C.R. (1996). Morphological and hemodynamic assessments of carotid stenosis using quantitative digital subtraction angiography. STROKE, 27 (039-2499 (Print), 9), 1672-1678.

Buxton, B.F., Alexander, D.C. (1996). Making the most of your image: colour and statistics.

Gleeson, M.J., Hill, D.L., Hawkes, D.J., Cox, T.C., Ruff, C., Studholme, C., ...Strong, A. (1996). 3-D imaging for skull base surgery.

Hill, D.L.G., Poynter Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., Pracy, J.P.M., ...Gleeson, M.J. (1996). MRI guided intranasal flexible micro-endoscopy.

Hill, D.L.G., Smith, P.N.P., Emery, C.L., Summers, P.E., Keevil, S.F., Pracy, J.P.M., ...Gleeson, M.J. (1996). MRI guided intranasal flexible micro-endoscopy.

Hill, D.L.G., Smith, P.N.P., Emery, C.L., Summers, P.E., Keevil, S.F., Pracy, J.P.M., ...Gleeson, M.J. (1996). MRI guided intranasal flexible micro-endoscopy.

Kwee, I.W., Tanikawa, Y., Proskurin, S.G., Arridge, S.R., Delpy, D.T., Yamada, Y. (1996). Null space regularization and MAP reconstruction in the ill-posed inverse imaging problem. Proceedings of SPIE, 2925 43-54.

Little, J.A., Hill, D.L.G., Hawkes, D.J. (1996). Deformations incorporating rigid structures.

Loh, W.H., Laming, R.I., Ellis, A.D., Atkinson, D. (1996). 10 Gbit/s Transmission over 700 km of Standard Single Mode Fibre with 10 cm Chirped Fibre Grating Compensator and Duobinary Transmitter. IEEE Photonics Technology Letters, 8 (9), 1258-1260.

Okada, E., Schweiger, M., Arridge, S.R., Firbank, M., Delpy, D.T. (1996). Experimental Verification of Monte Carlo and Finite Element Methods for the estimation of the optical pathlength in inhomogeneous tissue. Applied Optics, 35 (19), 3362-3371.

Schnabel, J.A., Arridge, S.R. (1996). Multiscale shape description of MR brain images using active contour models.

Schnabel, J.A., Arridge, S.R. (1996). A multi-scale shape description tool for 3D MR brain images.

Schnabel, J.A., Wang, L.Q., Arridge, S.R. (1996). Shape description of spinal cord atrophy in patients with MS.

Simmons, A., Arridge, S.R., Barker, G.J., Williams, S.C.R. (1996). Simulation of MRI cluster plots and application to neurological segmentation. Magnetic Resonance Imaging, 14 (1), 73-92. doi:10.1016/0730-725X(95)02040-Z

Studholme, C., Hill, D.L.G., Hawkes, D.J. (1996). Incorporating connected region labelling into automated image registration using mutual information.

Studholme, C., Hill, D.L.G., Hawkes, D.J., I.E.E.E. (1996). Incorporating connected region labelling into automated image registration using mutual information.

Studholme, C., Hill, D.L., Hawkes, D.J. (1996). Automated 3-D registration of MR and CT images of the head. MED IMAGE ANAL, 1 (361-8415 (Print), 2), 163-175.

Studholme, C., Little, J.A., Penny, G.P., Hill, D.L.G., Hawkes, D.J. (1996). Automated multimodality registration using the full affine transformation: Application to MR and CT guided skull base surgery.

Thomas, D.G., Doshi, P., Colchester, A., Hawkes, D.J., Hill, D.L., Zhao, J., ...Evans, R.I. (1996). Craniotomy guidance using a stereo-video-based tracking system. STEREOTACT FUNCT NEUROSURG, 66 (011-6125 (Print), 1-3), 81-83.

Thomas, D.G.T., Doshi, P., Colchester, A., Hawkes, D.J., Hill, D.L.C., Zhao, J., ...Evans, R.I. (1996). Craniotomy guidance using a stereo-video-based tracking system.

West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Kessler, R.M., ...Collignon, A. (1996). Comparison and evaluation of retrospective intermodality image registration techniques.

Wong, W.L., Hussain, K., Chevretton, E., Hawkes, D.J., Baddeley, H., Maisey, M., McGurk, M. (1996). Validation and clinical application of computer-combined computed tomography and positron emission tomography with 2-[18F]fluoro-2-deoxy-D-glucose head and neck images. AM J SURG, 172 (002-9610 (Print), 6), 628-632.

1995

Arridge, S.R. (1995). Photon-measurement density-functions I: Analytical forms.. Applied Optics, 34 (31), 7395-7409.

ARRIDGE, S.R., HIRAOKA, M., SCHWEIGER, M. (1995). Modelling of noise for near-infrared transillumination imaging.

Arridge, S.R., Hiraoka, M., Schweiger, M. (1995). Statistical basis for the determination of optical pathlength in tissue.. Physics in Medicine and Biology, 40 (9), 1539-1558.

Arridge, S.R., Schweiger, M. (1995). Direct calculation of the moments of the distribution of photon time-of-flight in tissue with a finite-element method.. Applied Optics, 34 (15), 2683-2687.

ARRIDGE, S.R., SCHWEIGER, M. (1995). Sensitivity to prior knowledge in optical tomographic reconstruction.

ARRIDGE, S.R., SCHWEIGER, M. (1995). Reconstruction in optical tomography using MRI based prior knowledge.

Edwardsl, P.J., Hill, D., Hawkes, D.J., Spink, R., Colchester, A., Strong, A. (1995). Neurosurgical guidance using the stereo microscope.

Edwards, P.J., Hawkes, D.J., Hill, D.L.G., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance. Computer Aided Surgery, 1 (3), 172-178. doi:10.3109/10929089509105692

Edwards, P.J., Hawkes, D.J., Hill, D.L.G., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance. Computer Aided Surgery, 1 (3), 172-178. doi:10.3109/10929089509105692

Edwards, P.J., Hawkes, D.J., Hill, D.L., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance. J IMAGE GUID SURG, 1 (078-7844 (Print), 3), 172-178.

Edwards, P.J., Hawkes, D.J., Hill, D.L., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance.. Journal of image guided surgery, 1 (3), 172-178. doi:10.1002/(sici)1522-712x(1995)1:3<172::aid-igs7>3.0.co;2-7

Edwards, P.J., Hill, D.L.G., Little, J.A., Sahni, V.A.S., Hawkes, D.J. (1995). Medical image registration incorporating deformations.

Edwards, P.J., Hill, D.L.G., Little, J.A., Sahni, V.A.S., Hawkes, D.J. (1995). Medical image registration incorporating deformations.

Griffin, L.D., Colchester, A.C.F. (1995). Superficial and Deep Structure in Linear Diffusion Scale Space: Isophotes , Critical Points and Separatrices. Image and Vision Computing, 13 (7), 543-557.

Hawkes, D.J. (1995). Imaging requirements for image guided interventions.

Hawkes, D.J., Ruff, C.F., Hill, D.L.G., Studholme, C., Edwards, P.J., Wong, W.L., Padhani, A. (1995). Three-dimensional multimodal imaging in image-guided interventions. Seminars in Interventional Radiology, 12 (1), 63-74. doi:10.1055/s-2008-1061314

Henri, C.J., Colchester, A.C.F., Zhao, J., Hawkes, D.J., Hill, D.L.G., Evans, R.L. (1995). Registration of 3-D surface data for intra-operative guidance and visualization in frameless stereotactic neurosurgery.

Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Cope, M., Delpy, D.T. (1995). Theoretical and experimental investigation of the effect of sulci on light propagation in brain tissue. Proceedings of SPIE, 2626 2-8.

Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Hebden, J.C., Hiraoka, M., Delpy, D.T. (1995). Experimental measurements on phantoms and Monte Carlo simulation to evaluate the effect of inhomogeneity on optical pathlength. Proceedings of SPIE, 2389 174-181.

Schnabel, J.A., Arridge, S.R. (1995). Active Contour Models for Shape Description using Multiscale Differential Invariants..

Schnabel, J.A., Arridge, S.R. (1995). Active contour models for shape description using multiscale differential invariants.

SCHNABEL, J., WANG, L.Q., RUECKERT, D., ARRIDGE, S. (1995). Fractal feature analysis and classification of MS lesions.

SCHWEIGER, M., ARRIDGE, S.R. (1995). Near-infrared imaging: Photon measurement density functions.

Schweiger, M., Arridge, S.R., Hiraoka, M., Delpy, D.T. (1995). The finite element method for the propagation of light in scattering media: boundary and source conditions.. Medical Physics, 22 (11), 1779-1792.

SIMMONS, A., ARRIDGE, S.R., BARKER, G.J. (1995). Simulation of MRI cluster plots.

Zhao, J., Colchester, A.C.F., Henri, C.J., Hawkes, D., Ruff, C. (1995). Visualisation of multimodal images for neurosurgical planning and guidance.

Zouganeli, P., Stevens, P.J., Atkinson, D., Parry, G. (1995). Design Trade-Offs and Evaluation of the Performance Attainable by GaAs-Al0.3Ga0.7As Asymmetric Fabry-Perot Modulators. IEEE Journal of Quantum Electronics, 31 (5), 927-943.

1994

Atkinson, D., Loh, W.H., Afanasjev, V.V., Grudinin, A.B., Seeds, A.J., Payne, D.N. (1994). Increased Amplifier Spacing Using Quantum Well Saturable Ab sorbers and Spectral Filtering in a Soliton System.

Atkinson, D., Loh, W.H., Afanasjev, V.V., Grudinin, A.B., Seeds, A.J., Payne, D.N. (1994). Increased Amplifier Spacing in a Soliton System Using Quantum Well Saturable Absorbers and Spectral Filtering. Optics Letters, 19 (19), 1514-1516.

COLCHESTER, A.C.F., ZHAO, J., HENRI, C., EVANS, R.L., ROBERTS, P., MAITLAND, N., ...THOMAS, D.G. (1994). CRANIOTOMY SIMULATION AND GUIDANCE USING A STEREO VIDEO-BASED TRACKING SYSTEM.

COLCHESTER, A.C.F., ZHAO, J., HENRI, C., EVANS, R.L., ROBERTS, P., MAITLAND, N., ...THOMAS, D.G. (1994). CRANIOTOMY SIMULATION AND GUIDANCE USING A STEREO VIDEO-BASED TRACKING SYSTEM.

Gandhe, A.J., Hill, D.L.G., Studholme, C., Hawkes, D.J., Ruff, C.F., Cox, T.C.S., ...Strong, A.J. (1994). Combined and three-dimensional rendered multimodal data for planning cranial base surgery: A prospective evaluation. Neurosurgery, 35 (3), 463-471. doi:10.1227/00006123-199409000-00015

Gandhe, A.J., Hill, D.L., Studholme, C., Hawkes, D.J., Ruff, C.F., Cox, T.C., ...Strong, A.J. (1994). Combined and three-dimensional rendered multimodal data for planning cranial base surgery: a prospective evaluation. NEUROSURGERY, 35 (148-396X (Print), 3), 463-470.

Griffin, L.D. (1994). The intrinsic geometry of the cerebral cortex. Journal of Theoretical Biology, 166 (3), 261-273. doi:10.1006/jtbi.1994.1024

Griffin, L.D., Colchester, A.C.F., Roll, S.A., Studholme, C.S. (1994). Hierarchical segmentation satisfying constraints.

Hawkes, D.J., Seifalian, A.M., Colchester, A.C.F., Iqbal, N., Hardingham, C.R., Bladin, C.F., Hobbs, K.E.F. (1994). Validation of volume blood flow measurements using three-dimensional distance-concentration functions derived from digital x-ray angiograms. Investigative Radiology, 29 (4), 434-442. doi:10.1097/00004424-199404000-00009

Hawkes, D.J., Seifalian, A.M., Colchester, A.C., Iqbal, N., Hardingham, C.R., Bladin, C.F., Hobbs, K.E. (1994). Validation of volume blood flow measurements using three-dimensional distance-concentration functions derived from digital x-ray angiograms. INVEST RADIOL, 29 (020-9996 (Print), 4), 434-442.

Hill, D.L.G., Hawkes, D.J. (1994). Medical image registration using knowledge of adjacency of anatomical structures.. Image and Vision Computing, 12 173-178.

HILL, D.L.G., STUDHOLME, C., HAWKES, D.J. (1994). VOXEL SIMILARITY MEASURES FOR AUTOMATED IMAGE REGISTRATION.

HILL, D.L.G., STUDHOLME, C., HAWKES, D.J. (1994). VOXEL SIMILARITY MEASURES FOR AUTOMATED IMAGE REGISTRATION.

Hill, D.L., Hawkes, D.J., Gleeson, M.J., Cox, T.C., Strong, A.J., Wong, W.L., ...Sofat, A. (1994). Accurate frameless registration of MR and CT images of the head: applications in planning surgery and radiation therapy.. Radiology, 191 (2), 447-454.

Robinson, G., Colchester, A., Griffin, L. (1994). Model-based recognition of anatomical objects from medical images. Image and Vision Computing, 12 (8), 499-507. doi:10.1016/0262-8856(94)90003-5

Roll, S.A., Colchester, A.C.F., Summers, P.E., Griffin, L.D. (1994). Intensity-based object extraction from 3D medical images including a correction for partial volume errors.

Schweiger, M., Arridge, S.R. (1994). Application of a finite element model in near infra-red spectroscopy and imaging.

Schweiger, M., Arridge, S.R. (1994). Application of a finite element model in near infra-red spectroscopy and imaging.

Simmons, A., Arridge, S.R., Barker, G.J., Cluckie, A.J., Tofts, P.S. (1994). Improvements to the quality of MRI cluster analysis. Magnetic Resonance Imaging, 12 (8), 1191-1204.

Simmons, A., Barker, G.J., Tofts, P.S., Gass, A., Arridge, S.R. (1994). A method for visualization of MRI partial volume regions--PAIR (PArtial volume sensitised Inversion Recovery imaging).. Magnetic Resonance Imaging, 12 (5), 821-826. doi:10.1016/0730-725X(94)92207-1

Simmons, A., Tofts, P.S., Barker, G.J., Arridge, S.R. (1994). Sources of intensity non-uniformity in spin echo images at 1.5T. Magnetic Resonance in Medicine, 32 (1), 1191-1204.

SIMMONS, A., TOFTS, P.S., BARKER, G.J., ARRIDGE, S.R. (1994). SOURCES OF INTENSITY NONUNIFORMITY IN SPIN-ECHO IMAGES AT 1.5-T. MAGNETIC RESONANCE IN MEDICINE, 32 (1), 121-128. doi:10.1002/mrm.1910320117

STUDHOLME, C., HILL, D.L.G., HAWKES, D.J. (1994). USING VOXEL SIMILARITY AS A MEASURE OF MEDICAL IMAGE REGISTRATION.

STUDHOLME, C., HILL, D.L.G., HAWKES, D.J. (1994). USING VOXEL SIMILARITY AS A MEASURE OF MEDICAL IMAGE REGISTRATION.

SYLLAIOS, A.J., ANDERSON, J.M., COLOMBO, L., LITTLER, C.L., BROSTOW, G.J., CHRISTENSEN, C.R., ...CLARKE, F.W. (1994). MAGNETOOPTICAL CHARACTERIZATION OF HGCDTE THIN-FILMS.

1993

Arridge, S.R. (1993). The Forward and Inverse Problems in Time Resolved Infra -Red Imaging.

Arridge, S.R., Kaschke, M. (1993). Modeling of light propagation and image formation.

ARRIDGE, S.R., SCHWEIGER, M. (1993). THE USE OF MULTIPLE DATA-TYPES IN TIME-RESOLVED OPTICAL-ABSORPTION AND SCATTERING TOMOGRAPHY (TOAST).

Arridge, S.R., Schweiger, M. (1993). Inverse Methods for Optical Tomography..

Arridge, S.R., Schweiger, M. (1993). The use of multiple data types in time-resolved Optical Absorption and Scattering Tomography (TOAST).

Arridge, S.R., Schweiger, M., Hiraoka, M., Delpy, D.T. (1993). A finite element approach for modelling photon transport in tissue.. Medical Physics, 20 299-309.

Arridge, S.R., Schweiger, M., Hiraoka, M., Delpy, D.T. (1993). Performance of an iterative reconstruction algorithm for near-infrared absorption and scatter imaging. Proceedings of SPIE, (1888), 360-371.

Essenpreis, M., Cope, M., Elwell, C., Arridge, S., van der Zee, P., Delpy, D. (1993). Wavelength dependence of the differential pathlength factor and the log slope in time-resolved tissue spectroscopy.

ESSENPREIS, M., ELWELL, C.E., COPE, M., VANDERZEE, P., ARRIDGE, S.R., DELPY, D.T. (1993). SPECTRAL DEPENDENCE OF TEMPORAL POINT SPREAD FUNCTIONS IN HUMAN TISSUES. APPLIED OPTICS, 32 (4), 418-425. doi:10.1364/AO.32.000418

HEBDEN, J., DELPY, D., ARRIDGE, S. (1993). INFRARED-LASERS MUSCLE IN ON MEDICAL IMAGING. PHYSICS WORLD, 6 (8), 23-24. doi:10.1088/2058-7058/6/8/22

Hill, D., Hawkes, D., Harrison, N., Ruff, C. (1993). A strategy for automated multimodality image registration incorporating anatomical knowledge and imager characteristics. Lecture Notes In Computer Science, 687 182-196.

Hill, D.L.G., Hawkes, D.J., Hussain, Z., Green, S.E.M., Ruff, C.F., Robinson, G.P. (1993). Accurate combination of CT and MR data of the head: Validation and applications in surgical and therapy planning.. Computerized Medical Imaging, 17 357-362.

Hiraoka, M., Firbank, M., Essenpreis, M., Cope, M., Arridge, S.R., van der Zee, P., Delpy, D.T. (1993). Monte Carlo simulation of light transport through inhomogeneous tissue. 1888 149-159.

Hiraoka, M., Firbank, M., Essenpreis, M., Cope, M., Arridge, S.R., van der Zee, P., Delpy, D.T. (1993). A Monte Carlo investigation of optical pathlength in inhomogeneous tissue and its application to near-infrared spectroscopy.. Physics in Medicine and Biology, 38 1859-1876.

Loh, W.H., Atkinson, D., Morkel, P.R., Grey, R., Seeds, A.J., Payne, D.N. (1993). Diode-pumped selfstarting passively modelocked neodymium-doped fibre laser. Electronics Letters, 29 (9), 808-810.

Loh, W.H., Atkinson, D., Morkel, P.R., Hopkinson, M., Rivers, A., Seeds, A.J., Payne, D.N. (1993). All solid-state subpicosecond passively mode locked erbium-doped fiber laser. Applied Physics Letters, 63 (1), 4-6.

Loh, W.H., Atkinson, D., Morkel, P.R., Hopkinson, M., Rivers, A., Seeds, A.J., Payne, D.N. (1993). Passively Mode-Locked Er3+ Fiber Laser Using a Semiconductor Nonlinear Mirror. IEEE Photonics Technology Letters, 5 (1), 35-37.

Neelin, P., Crossman, J., Hawkes, D.J., Ma, Y., Evans, A.C. (1993). Validation of an MRI/PET landmark registration method using 3D simulated PET images and point simulations. COMPUT MED IMAGING GRAPH, 17 (895-6111 (Print), 4-5), 351-356.

NEELIN, P., CROSSMAN, J., HAWKES, D.J., MA, Y., EVANS, A.C. (1993). VALIDATION OF AN MRI/PET LANDMARK REGISTRATION METHOD USING 3D SIMULATED PET IMAGES AND POINT SIMULATIONS. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 17 (4-5), 351-356. doi:10.1016/0895-6111(93)90028-L

Robinson, G.P., Colchester, A.C.F., Griffin, L.D. (1993). Model-based recognition of anatomical objects from medical images.

Schweiger, M., Arridge, S.R., Delpy, D.T. (1993). Application of the finite element method for the forward and inverse models in optical tomography.. Journal of Mathematical Imaging and Vision, 3 263-283.

SCHWEIGER, M., ARRIDGE, S.R., HIRAOKA, M., FIRBANK, M., DELPY, D.T. (1993). COMPARISON OF A FINITE-ELEMENT FORWARD MODEL WITH EXPERIMENTAL PHANTOM RESULTS - APPLICATION TO IMAGE-RECONSTRUCTION.

Schweiger, M., Arridge, S.R., Hiraoka, M., Firbank, M., Delpy, D.T. (1993). Comparison of a finite-element forward model with experimental phantom results: application to image reconstruction. Proceedings of SPIE, 1888 179-190.

1992

Arridge, S.R., Cope, M., Delpy, D.T. (1992). The theoretical basis for the determination of optical pathlengths in tissue: temporal and frequency analysis.. Physics in Medicine and Biology, 37 (7), 1531-1560.

Arridge, S.R., Schweiger, M., Delpy, D.T. (1992). Iterative reconstruction of near-infrared absorption images. Proceedings of SPIE, 1767 372-383.

Brunt, J.N., Wicks, D.A., Hawkes, D.J., Seifalian, A.M., du Boulay, G.H., Colchester, A.F., Wallis, A. (1992). The measurement of blood flow waveforms from X-ray angiography. Part 1: Principles of the method and preliminary validation. PROC INST MECH ENG [H ], 206 (954-4119 (Print), 2), 73-85.

Colchester, A.C.F., Hawkes, D.J. (1992). Information processing in medical imaging. Image and Vision Computing, 10 (6), 331-. doi:10.1016/0262-8856(92)90018-x

Colchester, A.C.F., Robinson, G.P., Griffin, L.D. (1992). A unified approach to the segmentation of grey-level and dot-pattern images.

Colchester, A., Seifalian, A., Hawkes, D., Brunt, J., Wicks, D., du Boulay, G., Hobbs, K. (1992). Correspondence. Investigative Radiology, 27 (3), 274-. doi:10.1097/00004424-199203000-00023

Colchester, A., Seifalian, A., Hawkes, D., Brunt, J., Wicks, D., du Boulay, G., Hobbs, K. (1992). Analysis of the variation of the distance-density curves with time as a way of extracting flow information from digital angiograms.. Investigative Radiology, 27 (3), 274-.

COLCHESTER, A., SEIFALIAN, A., HAWKES, D., BRUNT, J., WICKS, D., DUBOULAY, G., HOBBS, K. (1992). DETERMINATION OF INSTANTANEOUS AND AVERAGE BLOOD-FLOW RATES FROM DIGITAL ANGIOGRAMS OF VESSEL PHANTOMS USING DISTANCE-DENSITY CURVES. INVESTIGATIVE RADIOLOGY, 27 (3), 274. doi:10.1097/00004424-199203000-00023

Griffin, L.D., Colchester, A.C.F., Robinson, G.P. (1992). Scale and segmentation of grey-level images using maximum gradient paths. Image and Vision Computing,

Griffin, L.D., Colchester, A.C.F., Robinson, G.P., Hawkes, D.J. (1992). Structure-sensitive scale and the hierarchical segmentation of gray-level images.

HAWKES, D.J., HARDINGHAM, C.R., SEIFALIAN, A.M., VIRDEE, M., COLCHESTER, A.C.F. (1992). RECENT ADVANCES IN EXTRACTING QUANTITATIVE INFORMATION FROM X-RAY ANGIOGRAPHIC DATA.

Hill, D.L., Green, S.E., Crossman, J.E., Hawkes, D.J., Robinson, G.P., Ruff, C.F., ...Gleeson, M.J. (1992). Visualization of multimodal images for the planning of skull base surgery.

Maisey, M.N., Hawkes, D.J., Lukawiecki-Vydelingum, A.M. (1992). Synergistic imaging. European Journal of Nuclear Medicine, 19 (12), 1002-1005. doi:10.1007/BF00180859

Maisey, M.N., Hawkes, D.J., Lukawieck-Vydelingum, A.M. (1992). Synergistic imaging. EUR J NUCL MED, 19 (340-6997 (Print), 12), 1002-1005.

Robinson, G.P., Colchester, A.C.F., Griffin, L.D., Hawkes, D.J. (1992). Integrated skeleton and boundary shape representation for medical image interpretation.

Robinson, G.P., Colchester, A.C., Griffin, L.D. (1992). Hierarchical shape representation for use in anatomical object recognition.

Rosin, P.L., Colchester, A.C.F., Hawkes, D.J. (1992). Early image representation using regions defined by maximum gradient paths between singular points. Pattern Recognition, 25 (7), 695-711. doi:10.1016/0031-3203(92)90133-4

Schweiger, M., Arridge, S.R., Hiraoka, M., Delpy, D.T. (1992). Application of the finite element method for the forward model in infrared absorption imaging. Proceedings of SPIE, 1768 97-108.

SEIFALIAN, A.M., HAWKES, D.J., BLADIN, C.F., HARDINGHAM, C.R., IQBAL, N., COLCHESTER, A.C.F., HOBBS, K.E.F. (1992). VOLUME BLOOD-FLOW WAVE-FORMS MEASUREMENTS FROM QUANTITATIVE X-RAY ANGIOGRAPHIC DATA WITH AID OF 3-DIMENSIONAL RECONSTRUCTIONS.

SIMMONS, A., ARRIDGE, S.R., BARKER, G.J., TOFTS, P.S. (1992). SEGMENTATION OF NEUROANATOMY IN MAGNETIC-RESONANCE IMAGES.

VANDERZEE, P., COPE, M., ARRIDGE, S.R., ESSENPREIS, M., POTTER, L.A., EDWARDS, A.D., ...REYNOLDS, E.O.R. (1992). EXPERIMENTALLY MEASURED OPTICAL PATHLENGTHS FOR THE ADULT HEAD, CALF AND FOREARM AND THE HEAD OF THE NEWBORN-INFANT AS A FUNCTION OF INTER OPTODE SPACING.

1991

Arridge, S.R., van der Zee, P., Cope, M., Delpy, D.T. (1991). Reconstruction methods for infrared absorption imaging. Proceedings of SPIE, 1431 204-215.

Colchester, A.C.F., Hawkes, D.J. (1991). Preface. .

Cope, M., van der Zee, P., Essenpreis, M., Arridge, S.R., Delpy, D.T. (1991). Data analysis methods for near-infrared spectroscopy of tissue: problems in determining the relative cytochrome aa3 concentration. Proceedings of SPIE, 1431 251-262.

Griffin, L.D., Colchester, A.C.F., Robinson, G.P. (1991). Scale and segmentation of grey-level images using maximum gradient paths.

Hawkes, D.J., Hardingham, C.R., Colchester, A.C. (1991). Matching of geometric models in the analysis of lumen shape in digital X-ray angiography. PROG CLIN BIOL RES, 363 (361-7742 (Print)), 341-353.

Hawkes, D.J., Robinson, L., Crossman, J.E., Sayman, H.B., Mistry, R., Maisey, M.N., Spencer, J.D. (1991). Registration and display of the combined bone scan and radiograph in the diagnosis and management of wrist injuries. European Journal of Nuclear Medicine, 18 (9), 752-756. doi:10.1007/BF00173434

Hawkes, D.J., Robinson, L., Crossman, J.E., Sayman, H.B., Mistry, R., Maisey, M.N., Spencer, J.D. (1991). Registration and display of the combined bone scan and radiograph in the diagnosis and management of wrist injuries. EUR J NUCL MED, 18 (340-6997 (Print), 9), 752-756.

Hill, D.L.G., Hawkes, D.J., Crossman, J.E., Gleeson, M.J., Cox, T.C.S., Bracey, E.E.C.M.L., ...Graves, P. (1991). Registration of MR and CT images for skull base surgery using point-like anatomical features. British Journal of Radiology, 64 (767), 1030-1035. doi:10.1259/0007-1285-64-767-1030

Hill, D.L.G., Hawkes, D.J., Hardingham, C.R. (1991). Use of anatomical knowledge to register 3d blood vessel data derived from DSA with MR images.

Hill, D.L., Hawkes, D.J., Crossman, J.E., Gleeson, M.J., Cox, T.C., Bracey, E.E., ...Graves, P. (1991). Registration of MR and CT images for skull base surgery using point-like anatomical features. BR J RADIOL, 64 (007-1285 (Print), 767), 1030-1035.

Hill, D.L., Hawkes, D.J., Crossman, J.E., Gleeson, M.J., Cox, T.C., Bracey, E.E., ...Graves, P. (1991). Registration of MR and CT images for skull base surgery using point-like anatomical features.. British Journal of Radiology, 64 (767), 1030-1035. doi:10.1259/0007-1285-64-767-1030

Lehmann, E.D., Hawkes, D.J., Hill, D.L., Bird, C.F., Robinson, G.P., Colchester, A.C., Maisey, M.N. (1991). Computer-aided interpretation of SPECT images of the brain using an MRI-derived 3D neuro-anatomical atlas. MED INFORM (LOND), 16 (307-7640 (Print), 2), 151-166.

Lehmann, E.D., Hawkes, D.J., Hill, D.L.G., Bird, C.F., Robinson, G.P., Colchester, A.C.F., Maisey, M.N. (1991). Computer-aided interpretation of SPECT images of the brain using an MRI-derived 3d neuro-anatomical atlas. Informatics for Health and Social Care, 16 (2), 151-166. doi:10.3109/14639239109012124

Lynch, J.A., Hawkes, D.J., Buckland-Wright, J.C. (1991). A robust and accurate method for calculating the fractal signature of texture in macroradiographs of osteoarthritic knees. Informatics for Health and Social Care, 16 (2), 241-251. doi:10.3109/14639239109012130

Lynch, J.A., Hawkes, D.J., Buckland-Wright, J.C. (1991). A robust and accurate method for calculating the fractal signature of texture in macroradiographs of osteoarthritic knees. MED INFORM (LOND), 16 (307-7640 (Print), 2), 241-251.

Lynch, J.A., Hawkes, D.J., Buckland-Wright, J.C. (1991). Analysis of texture in macroradiographs of osteoarthritic knees using the fractal signature. PHYS MED BIOL, 36 (031-9155 (Print), 6), 709-722.

Parry, G., Whitehead, M., Stevens, P., Rivers, A., Barnes, P., Atkinson, D., ...Roberts, C. (1991). The design and application of III-V multiquantum well optical modulators.. Physica Scripta, 210-214.

Rosin, P.L., Colchester, A.C., Hawkes, D.J. (1991). Early visual representation using regions defined by maximum gradient profiles between singular points.. Progress in clinical and biological research, 363 369-387.

Seifalian, A.M., Hawkes, D.J., Hardingham, C.R., Colchester, A.C., Reidy, J.F. (1991). Validation of a quantitative radiographic technique to estimate pulsatile blood flow waveforms using digital subtraction angiographic data. J BIOMED ENG, 13 (141-5425 (Print), 3), 225-233.

Seifalian, A.M., Stansby, G.P., Hobbs, K.E., Hawkes, D.J., Colchester, A.C. (1991). Measurement of liver blood flow: a review. HPB SURG, 4 (894-8569 (Print), 3), 171-186.

1990

ARRIDGE, S.R. (1990). MANIPULATION OF VOLUME DATA FOR SURGICAL SIMULATION.

ARRIDGE, S.R., LINNEY, A.D. (1990). INTERACTIVE OBJECT DISSECTION USING AN ARBITRARY VOLUME MASK.

ARRIDGE, S.R., VANDERZEE, P., COPE, M., DELPY, D.T. (1990). NEW RESULTS FOR THE DEVELOPMENT OF INFRARED-ABSORPTION IMAGING.

Arridge, S.R., Van der Zee, P., Cope, M., Delpy, D.T. (1990). New results for the development of infrared absorption imaging. BIOMEDICAL IMAGE PROCESSING, PROC SPIE, 1245 91-103.

Atkinson, D., Parry, G., Austin, E.J. (1990). Modelling of Electro-Absorption in Coupled Quantum Wells with Applications to Low-Voltage Optical Modulation. Semiconductor Science and Technology, 5 516-524.

Hill, D.L.G., Hawkes, D.J., Lehmann, E.D., Crossman, J.E., Robinson, L., Bird, C.F., Maisey, M.N. (1990). Registered high resolution images in the interpretation of radionuclide scans.

Parry, G., Whitehead, M., Stevens, P., Rivers, A., Barnes, P., Atkinson, D., ...Roberts, C. (1990). The Design and Application of III-V Multiquantum Well Optical Modulators.

VANDERZEE, P., ARRIDGE, S.R., COPE, M., DELPY, D.T. (1990). THE EFFECT OF OPTODE POSITIONING ON OPTICAL PATHLENGTH IN NEAR-INFRARED SPECTROSCOPY OF BRAIN.

WYATT, J.S., COPE, M., DELPY, D.T., VANDERZEE, P., ARRIDGE, S., EDWARDS, A.D., REYNOLDS, E.O.R. (1990). MEASUREMENT OF OPTICAL-PATH LENGTH FOR CEREBRAL NEAR-INFRARED SPECTROSCOPY IN NEWBORN-INFANTS. DEVELOPMENTAL NEUROSCIENCE, 12 (2), 140-144. doi:10.1159/000111843

1989

ARRIDGE, S.R., GRINDROD, S.R., LINNEY, A.D., TOFTS, P.S., WICKS, D. (1989). USING GREYSCALE VOXEL DATABASES FOR IMPROVED SHADING AND SEGMENTATION. MEDICAL INFORMATICS, 14 (2), 157-171. doi:10.3109/14639238908994988

Arridge, S.R., Grindrod, S.R., Linney, A.D., Wicks, D., Tofts, P.S. (1989). Using greyscale voxel databases for improved shading and segmentation. Medical Informatics, 14 (4), 267-.

Arridge, S.R., van der Zee, P., Delpy, D.T., Cope, M. (1989). Particle sizing in the Mie scattering region: singular value analysis.. Inverse Problems, 5 671-689.

Delpy, D.T., Arridge, S.R., Cope, M., Edwards, D., Reynolds, E.O., Richardson, C.E., ...van der Zee, P. (1989). Quantitation of pathlength in optical spectroscopy.. Advances in experimental medicine and biology, 248 41-46. doi:10.1007/978-1-4684-5643-1_5

LINNEY, A.D., GRINDROD, S.R., ARRIDGE, S.R., MOSS, J.P. (1989). 3-DIMENSIONAL VISUALIZATION OF COMPUTERIZED-TOMOGRAPHY AND LASER SCAN DATA FOR THE SIMULATION OF MAXILLO-FACIAL SURGERY. MEDICAL INFORMATICS, 14 (2), 109-121. doi:10.3109/14639238908994984

Seifalian, A.M., Hawkes, D.J., Colchester, A.C., Hobbs, K.E. (1989). A new algorithm for deriving pulsatile blood flow waveforms tested using stimulated dynamic angiographic data. NEURORADIOLOGY, 31 (028-3940 (Print), 3), 263-269.

1988

Delpy, D.T., Cope, M., van der Zee, P., Arridge, S., Wray, S., Wyatt, J. (1988). Estimation of optical pathlength through tissue from direct time of flight measurement.. PHYSICS IN MEDICINE AND BIOLOGY, 33 (12), 1433-1442. doi:10.1088/0031-9155/33/12/008

MOSS, J.P., GRINDROD, S.R., LINNEY, A.D., ARRIDGE, S.R., JAMES, D. (1988). A COMPUTER-SYSTEM FOR THE INTERACTIVE PLANNING AND PREDICTION OF MAXILLOFACIAL SURGERY. AMERICAN JOURNAL OF ORTHODONTICS AND DENTOFACIAL ORTHOPEDICS, 94 (6), 469-475. doi:10.1016/0889-5406(88)90004-2

SEIFALIAN, A.M., HAWKES, D.J., COLCHESTER, A.C.F., HOBBS, K.E.F. (1988). COMPARISON OF PROCESSING TECHNIQUES FOR MEASUREMENT OF INTRAVASCULAR BLOOD-FLOW FROM SIMULATED DYNAMIC ANGIOGRAPHIC IMAGES. BRITISH JOURNAL OF RADIOLOGY, 61 (728), 721.

1987

HAWKES, D.J., FITZGERALD, M., BELLI, A., TILLER, G., STEWART, A. (1987). ACCEPTANCE TESTING AND QUALITY-CONTROL IN DIGITAL FLUOROGRAPHY.

MOSS, J.P., LINNEY, A.D., GRINDROD, S.R., ARRIDGE, S.R., CLIFTON, J.S. (1987). 3-DIMENSIONAL VISUALIZATION OF THE FACE AND SKULL USING COMPUTERIZED-TOMOGRAPHY AND LASER SCANNING TECHNIQUES. EUROPEAN JOURNAL OF ORTHODONTICS, 9 (4), 247-253.

Moss, J.P., Linney, A.D., Grindrod, S.R., Arridge, S.R., Clifton, J.S. (1987). Three-dimensional visualization of the face and skull using computerized tomography and laser scanning techniques. European Journal of Orthodontics, 9 (1), 247-253. doi:10.1093/ejo/9.1.247

1986

du Boulay, G.H., Brunt, J., Colchester, A., Hawkes, D., Wallis, A., Wicks, D. (1986). Volume flow measurement of pulsatile flow by digitised cine angiography.. Acta radiologica. Supplementum, 369 59-62.

Hawkes, D.J., Jackson, D.F., Parker, R.P. (1986). Tissue analysis by dual-energy computed tomography. BR J RADIOL, 59 (007-1285 (Print), 702), 537-542.

MOSS, J.P., LINNEY, A., ARRIDGE, S., HAMMOND, M. (1986). AN INVESTIGATION OF THE METHOD OF USING LASER-BEAMS TO MONITOR THE FACIAL MORPHOLOGY OF SURGICAL PATIENTS.

1985

ARRIDGE, S., MOSS, J.P., LINNEY, A.D., JAMES, D.R. (1985). 3 DIMENSIONAL DIGITIZATION OF THE FACE AND SKULL. JOURNAL OF MAXILLOFACIAL SURGERY, 13 (3), 136-143. doi:10.1016/S0301-0503(85)80034-5

ARRIDGE, S.R., COPE, M., VANDERZEE, P., HILLSON, P.J., DELPHY, D.T. (1985). NEAR-INFRARED TRANS-ILLUMINATION AS A METHOD OF VISUALIZATION AND MEASUREMENT OF THE OXYGENATION STATE OF BRAIN AND MUSCLE IN NEWBORN-INFANTS. JOURNAL OF PHOTOGRAPHIC SCIENCE, 33 (6), 227.

1983

Jackson, D.F., Hawkes, D.J. (1983). Energy dependence in the spectral factor approach to computed tomography. PHYS MED BIOL, 28 (031-9155 (Print), 3), 289-293.

1982

Husband, J.E., Hawkes, D.J., Peckham, M.J. (1982). CT estimations of mean attenuation values and volume in testicular tumors: A comparison with surgical and histologic findings. Radiology, 144 (3), 553-558. doi:10.1148/radiology.144.3.7100471

Husband, J.E., Hawkes, D.J., Peckham, M.J. (1982). CT estimations of mean attenuation values and volume in testicular tumors: a comparison with surgical and histologic findings. RADIOLOGY, 144 (033-8419 (Print), 3), 553-558.

1980

Hawkes, D.J., Jackson, D.F. (1980). An accurate parametrisation of the x-ray attenuation coefficient. PHYS MED BIOL, 25 (031-9155 (Print), 6), 1167-1171.