Publications

Publications

Publications

2017

Alexander, D.C., Dyrby, T.B., Nilsson, M., Zhang, H. (2017). Imaging brain microstructure with diffusion MRI: practicality and applications.. NMR in biomedicine, doi:10.1002/nbm.3841
Alexander, D.C., Zikic, D., Ghosh, A., Tanno, R., Wottschel, V., Zhang, J., ...Zhang, H. (2017). Image quality transfer and applications in diffusion MRI.. Neuroimage, doi:10.1016/j.neuroimage.2017.02.089
Alfaro-Almagro, F., Jenkinson, M., Bangerter, N.K., Andersson, J.L.R., Griffanti, L., Douaud, G., ...Vallee, E. (2017). Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank.. NeuroImage, doi:10.1016/j.neuroimage.2017.10.034
Andrews, J.T.A., Jaccard, N., Rogers, T.W., Griffin, L.D. (2017). Representation-learning for anomaly detection in complex x-ray cargo imagery.
Bailey, C., Bourne, R.M., Siow, B., Johnston, E.W., Pye, H., Heavey, S., ...Patel, D. (2017). Validation of VERDICT MRI using fresh and fixed prostate specimens with aligned histological slices.
Bailey, C.E.M., Grussu, F., Siow, B., Mertzanidou, T., Hipwell, J.H., Owen, J., ...Hawkes, D.J. (2017). Diffusion anisotropy in breast cancer tissue corresponds to spatial patterns of collagen alignment from structure tensor analysis of histology.
Bastiani, M., Cottaar, M., Dikranian, K., Ghosh, A., Zhang, H., Alexander, D.C., ...Sotiropoulos, S.N. (2017). Improved tractography using asymmetric fibre orientation distributions.. NeuroImage, doi:10.1016/j.neuroimage.2017.06.050
Batalle, D., Hughes, E.J., Zhang, H., Tournier, J.D., Tusor, N., Aljabar, P., ...Nosarti, C. (2017). Early development of structural networks and the impact of prematurity on brain connectivity.. Neuroimage, doi:10.1016/j.neuroimage.2017.01.065
Battiston, M., Grussu, F., Ianus, A., Schneider, T., Prados, F., Fairney, J., ...Wheeler-Kingshott, C. (2017). Optimal framework for quantitative Magnetization Transfer imaging of small structures.
Battiston, M., Grussu, F., Ianus, A., Schneider, T., Prados, F., Fairney, J., ...Wheeler-Kingshott, C. (2017). An optimized framework for quantitative Magnetization Transfer imaging of the cervical spinal cord in vivo. Magnetic Resonance in Medicine,
Bertolli, O., Arridge, S., Wollenweber, S.D., Stearns, C.W., Hutton, B.F., Thielemans, K. (2017). Sign determination methods for the respiratory signal in data-driven PET gating. PHYSICS IN MEDICINE AND BIOLOGY, 62 (8), doi:10.1088/1361-6560/aa6052
Betcke, M.M., Cox, B.T., Huynh, N., Zhang, E.Z., Beard, P.C., Arridge, S.R. (2017). Acoustic Wave Field Reconstruction from Compressed Measurements with Application in Photoacoustic Tomography. IEEE Transactions on Computational Imaging, doi:10.1109/TCI.2017.2706029
Bourne, R.M., Bailey, C.E.M., Johnston, E.W., Pye, H., Heavey, S., Whitaker, H., ...Sridhar, A. (2017). Apparatus for histological validation of in vivo and ex vivo magnetic resonance imaging of the human prostate. Frontiers in Oncology, doi:10.3389/fonc.2017.00047
Bousse, A., Manber, R., Holman, B.F., Atkinson, D., Arridge, S., Ourselin, S., ...Thielemans, K. (2017). Evaluation of a direct motion estimation/correction method in respiratory-gated PET/MRI with motion-adjusted attenuation.. Medical physics, doi:10.1002/mp.12253
Calvert, N., Helo, Y., Mertzanidou, T., Tuch, D.S., Arridge, S., Stoyanov, D. (2017). A Simulation Study of Spectral Cerenkov Luminescence Imaging for Tumour Margin Estimation.
Chouhan, M., Menys, A., Bainbridge, A., Atkinson, D., Punwani, S., Mookerjee, R., Taylor, S. (2017). Cardiac-Induced Liver Deformation as a Measure of Liver Stiffness: Normal Volunteer Reproducibility and Post-Prandial Stress Studies.
Cochran, J.M., Busch, D.R., Ban, H.Y., Kavuri, V.C., Schweiger, M.J., Arridge, S.R., Yodh, A.G. (2017). Multi-modal diffuse optical techniques for breast cancer neoadjuvant chemotherapy monitoring (Conference Presentation).
de Jonge, C.S., Gollifer, R.M., Nederveen, A.J., Atkinson, D., Taylor, S.A., Stoker, J., Menys, A. (2017). Dynamic MRI for bowel motility imaging – how fast and how long?.
de Jonge, C.S., Gollifer, R.M., Nederveen, A.J., Atkinson, D., Taylor, S.A., Stoker, J., Menys, A. (2017). Dynamic MRI for bowel motility imaging: How fast and how long?.
Devine, W., Johnston, E., Bonet-Carne, E., Punwani, S., Alexander, D., Atkinson, D. (2017). Linking a Multi-Compartment T2 Model to Diffusion Microstructure in Prostate Cancer.
Dikaios, N., Atkinson, D., Tudisca, C., Purpura, P., Forster, M., Ahmed, H., ...Punwani, S. (2017). A comparison of Bayesian and non-linear regression methods for robust estimation of pharmacokinetics in DCE-MRI and how it affects cancer diagnosis. Computerized Medical Imaging and Graphics, 56 1-10. doi:10.1016/j.compmedimag.2017.01.003
Dikaios, N., Daniels, C., Gallagher, F., O'Callaghan, J., Atkinson, D., Punwani, S. (2017). Quantitative Analysis of Hyperpolarized [1-13C]pyruvate Metabolic Kinetics Using Bayesian Inference Algorithms.
Donaldson, I., Hamid, S., Barratt, D., Hu, Y., Rodell, R., Villarini, B., ...McCartan, N. (2017). THE SMARTTARGET BIOPSY TRIAL: A PROSPECTIVE PAIRED BLINDED TRIAL WITH RANDOMISATION TO COMPARE VISUAL-ESTIMATION AND IMAGE-FUSION TARGETED PROSTATE BIOPSIES.
Doran, S.J., Hipwell, J.H., Denholm, R., Eiben, B., Busana, M., Hawkes, D.J., ...Dos Santos Silva, I. (2017). Breast MRI segmentation for density estimation: Do different methods give the same results and how much do differences matter?. Medical physics, doi:10.1002/mp.12320
Eshaghi, A., Prados Carrasco, F., Brownlee, W., Altmann, D.R., Tur Gomez, C., Cardoso, M.J., ...de Stefano, N. (2017). Deep grey matter volume loss drives disability worsening in multiple sclerosis.. Annals of Neurology,
Farina, A., Betcke, M., Di Sieno, L., Bassi, A., Ducros, N., Pifferi, A., ...D 'Andrea, C. (2017). Diffuse Optical Tomography based on time-resolved compressive sensing.
Farina, A., Betcke, M., di Sieno, L., Bassi, A., Ducros, N., Pifferi, A., ...D'Andrea, C. (2017). Multiple-view diffuse optical tomography system based on time-domain compressive measurements. OPTICS LETTERS, 42 (14), 2822-2825. doi:10.1364/OL.42.002822
Farina, A., Betcke, M., Ducros, N., di Sieno, L., Bassi, A., Pifferi, A., ...D'Andrea, C. (2017). Multiple-view time-resolved diffuse optical tomography based on structured illumination and compressive detection.
Ferizi, U., Scherrer, B., Schneider, T., Alipoor, M., Eufracio, O., Fick, R.H.J., ...Rivera, M. (2017). Diffusion MRI microstructure models with in vivo human brain Connectome data: Results from a multi-group comparison. NMR in Biomedicine, doi:10.1002/nbm.3734
Fonseca, M., Malone, E., Lucka, F., Ellwood, R., An, L., Arridge, S., ...Cox, B. (2017). Three-dimensional photoacoustic imaging and inversion for accurate quantification of chromophore distributions.
Ganepola, T., Nagy, Z., Alexander, D.C., Sereno, M.I. (2017). An unsupervised group average cortical parcellation using diffusion MRI to probe cytoarchitecture.
Godard, C., Mac Aodha, O., Brostow, G.J. (2017). Unsupervised Monocular Depth Estimation with Left-Right Consistency.
Gollifer, R., Menys, A., Makanyanga, J., Puylaert, C., Vos, F., Stoker, J., ...Taylor, S. (2017). Analysis of Motility in Apparently Normal Small Bowel – Relationship to Crohn’s Symptoms.
Gollifer, R., Menys, A., Plumb, A., Vos, F.M., Stoker, J., Taylor, S.A., Atkinson, D. (2017). Magnetic resonance imaging assessed small bowel dysmotility and its relationship with patient reported symptoms: An exploration of automated vs subjective assessment techniques.
Griffin, L., Mylonas, D. (2017). Why so Much Talk About Red?.
Grussu, F., Battiston, M., Prados Carrasco, F., Schneider, T., Kaden, E., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). A unified signal readout for reproducible multimodal characterisation of brain microstructure.
Grussu, F., Battiston, M., Prados Carrasco, F., Schneider, T., Kaden, E., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). Whole-brain macromolecular tissue volume mapping: a comparison of imaging readouts at 3 Tesla.
Grussu, F., Ianus, A., Tur Gomez, C., Prados Carrasco, F., Schneider, T., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2017). Origin of the time dependence of the diffusion-weighted signal in spinal cord white matter.
Grussu, F., Schneider, T., Tur, C., Yates, R.L., Tachrount, M., Ianuş, A., ...Alexander, D.C. (2017). Neurite dispersion: A new marker of multiple sclerosis spinal cord pathology?. Annals of Clinical and Translational Neurology, doi:10.1002/acn3.445
Hampshire, T., Menys, A., Jaffer, A., Bhatnagar, G., Punwani, S., Atkinson, D., ...Taylor, S.A. (2017). A Probabilistic Method for Estimation of Bowel Wall Thickness in MR Colonography.. PLoS One, 12 (1), e0168317. doi:10.1371/journal.pone.0168317
Han, L., Dong, H., McClelland, J.R., Han, L., Hawkes, D.J., Barratt, D.C. (2017). A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs. MEDICAL IMAGE ANALYSIS, 39 87-100. doi:10.1016/j.media.2017.04.003
Huynh, N., Lucka, F., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2017). Sub-sampled Fabry-Perot photoacoustic scanner for fast 3D imaging.
Ianuş, A., Shemesh, N., Alexander, D.C., Drobnjak, I. (2017). Measuring microscopic anisotropy with diffusion magnetic resonance: From material science to biomedical imaging. In Mathematics and Visualization. (pp. 229-255). .
Ilisescu, C., Kanaci, A., Romagnoli, M., Campbell, N.D.F., Brostow, G.J. (2017). Responsive Action-based Video Synthesis.
Jaccard, N., Rogers, T.W., Morton, E.J., Griffin, L.D. (2017). Detection of concealed cars in complex cargo X-ray imagery using Deep Learning. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY, 25 (3), 323-339. doi:10.3233/XST-16199
Jaccard, N., Szita, N., Griffin, L.D. (2017). Segmentation of phase contrast microscopy images based on multi-scale local Basic Image Features histograms. Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization, 5 (5), 359-367. doi:10.1080/21681163.2015.1016243
Jacobs, J.G., Brostow, G.J., Freeman, A., Alexander, D.C., Panagiotaki, E. (2017). Deep Learning for Quantifiable Characterisation of Prostate Histology with Limited Data.
Jacobs, J.G., Brostow, G.J., Freeman, A., Alexander, D.C., Panagiotaki, E. (2017). Detecting and Classifying Nuclei on a Budget.
Johnston, E., Antonelli, M., Dikaios, N., Ourselin, S., Atkinson, D., Punwani, S. (2017). Improving the Reproducibility of Quantitative Imaging Metrics for Multicentre Multiparametric Prostate MRI Trials.
Johnston, E., Bailey, C., Bonet-Carne, E., Pye, H., Heavey, S., Patel, D., ...Devine, W. (2017). Why is the Peripheral Zone of the Normal Human Prostate High in ADC Value and T2-Weighted Signal Intensity?.
Johnston, E., Bonet-Carne, E., Pye, H., Clemente, J., Yvernault, B., Patel, D., ...Sridhar, A. (2017). Microstructural Diffusion-Weighted (VERDICT) MRI Metrics are Repeatable and Show Potential at Characterising Gleason 7 Prostate Cancer Non-Invasively.
Jones, G.A., Clancy, N.T., Du, X., Robu, M., Arridge, S., Elson, D.S., Stoyanov, D. (2017). Fast Estimation of Haemoglobin Concentration in Tissue Via Wavelet Decomposition. International Conference on Medical Image Computing and Computer-Assisted Intervention, doi:10.1007/978-3-319-66185-8_12
Jones, G., Clancy, N., Helo, Y., Arridge, S., Elson, D., Stoyanov, D. (2017). Bayesian Estimation of Intrinsic Tissue Oxygenation and Perfusion from RGB Images.. IEEE Trans Med Imaging, doi:10.1109/TMI.2017.2665627
Kakkar, L., Bennett, O., Atkinson, D., Siow, B., Phillips, J., Richardson, S., ...Drobnjak, I. (2017). Low frequency oscillating gradient spin-echo sequences improve sensitivity to axon diameter: An experimental study in viable nerve tissue.
Kakkar, L., Bennett, O., Siow, B., Richardson, S., Ianus, A., Quick, T., ...Drobnjak, I. (2017). Low frequency oscillating gradient spin-echo sequences improve sensitivity to axon diameter: An experimental study in viable nerve tissue. NeuroImage, doi:10.1016/j.neuroimage.2017.07.060
Kakkar, L.S., Atkinson, D., Chan, R.W., Siow, B., Ianus, A., Drobnjak, I. (2017). Sensitivity of OGSE activeax to microstructural dimensions on a clinical scanner.
Kelly, C.J., Makropoulos, A., Cordero-Grande, L., Hutter, J., Price, A., Hughes, E., ...Kulkarni, S. (2017). Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery. SCIENTIFIC REPORTS, 7 doi:10.1038/s41598-017-14939-z
Kowalik, G., Steeden, J., Atkinson, D., Mortensen, K., Muthurangu, V. (2017). Golden Step, Golden Angle, Spiral-Cartesian Imaging for Flexible Gated Three-Dimensional Angiography.
Lacher, R.M., V.a.s.c.o.n.c.e.l.o.s., B.i.s.h.o.p., W.i.l.l.i.a.m.s., K.e.s.h.t.g.a.r., H.a.w.k.e.s., ......S.t.o.y.a.n.o.v. (2017). A comparative study of breast surface reconstruction for aesthetic outcome assessment. arXiv,
Lorenzi, M., Filippone, M., Frisoni, G.B., Alexander, D.C., Ourselin, S., Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2017). Probabilistic disease progression modeling to characterize diagnostic uncertainty: Application to staging and prediction in Alzheimer's disease.. NeuroImage, doi:10.1016/j.neuroimage.2017.08.059
Lorenzi, M., Gutman, B., Thompson, P.M., Alexander, D.C., Ourselin, S., Altmann, A. (2017). Secure multivariate large-scale multi-centric analysis through on-line learning: an imaging genetics case study.
Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alexander, D.C. (2017). A vertex clustering model for disease progression: Application to cortical thickness images.
Markiewicz, P.J., Ehrhardt, M., Erlandsson, K., Noonan, P.J., Barnes, A., Schott, J.M., ...Ourselin, S. (2017). NiftyPET: A high-throughput software platform for high quantitative accuracy and precision PET imaging and analysis. Neuroinformatics, doi:10.1007/s12021-017-9352-y
McClelland, J.R., Modat, M., Arridge, S., Grimes, H., D'Souza, D., Thomas, D., ...Collins, D. (2017). A generalized framework unifying image registration and respiratory motion models and incorporating image reconstruction, for partial image data or full images.. Physics in Medicine and Biology, doi:10.1088/1361-6560/aa6070
Melbourne, A., Pratt, R., Owen, D., Sokolska, M., Bainbridge, A., Atkinson, D., ...David, A. (2017). DECIDE: Diffusion-RElaxation Combined Imaging for Detailed Placental Evaluation.
Melbourne, A., Pratt, R., Sokolska, M., Owen, D., Bainbridge, A., Atkinson, D., ...David, A. (2017). SEPARATION OF FETAL AND MATERNAL CIRCULATIONS USING MULTI-MODAL MRI.
Menys, A., Keszthelyi, D., Fitzke, H., Fikree, A., Atkinson, D., Aziz, Q., Taylor, S. (2017). A magnetic resonance imaging study of gastric motor function in patients with dyspepsia associated with Ehlers-Danlos Syndrome-Hypermobility Type: A feasibility study. Neurogastroenterology and Motility, 29 (9), doi:10.1111/nmo.13090
Mertzanidou, T., Hipwell, J.H., Reis, S., Hawkes, D.J., Bejnordi, B.E., Dalmis, M., ...Karssemeijer, N. (2017). 3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging. Med Phys, doi:10.1002/mp.12077
Mylonas, D., Andrews, J., Griffin, L. (2017). Variability in Free Colour Naming Across the Full Colour Gamut.
Nedjati-Gilani, G.L., Schneider, T., Hall, M.G., Cawley, N., Hill, I., Ciccarelli, O., ...Alexander, D.C. (2017). Machine learning based compartment models with permeability for white matter microstructure imaging. NeuroImage, 150 119-135. doi:10.1016/j.neuroimage.2017.02.013
Oxtoby, N.P., Alexander, D.C. (2017). Imaging plus X: multimodal models of neurodegenerative disease.. Current opinion in neurology, doi:10.1097/wco.0000000000000460
Oxtoby, N.P., Garbarino, S., Firth, N.C., Warren, J.D., Schott, J.M., Alexander, D.C. (2017). Data-Driven Sequence of Changes to Anatomical Brain Connectivity in Sporadic Alzheimer's Disease. FRONTIERS IN NEUROLOGY, 8 doi:10.3389/fneur.2017.00580
Palmer, L., Bialkowski, A., Brostow, G.J., Ambeck-Madsen, J., Lavie, N. (2017). Predicting the Perceptual Demands of Urban Driving with Video Regression.
Pavisic, I.M., Firth, N.F., Parsons, S., Martinez Rego, D., Shakespeare, T.J., Yong, K.X.X., ...Macpherson, K. (2017). Eyetracking Metrics in Young Onset Alzheimer’s Disease: A Window into Cognitive Visual Functions. Frontiers in Neurology,
Pecheva, D., Yushkevich, P., Batalle, D., Hughes, E., Aljabar, P., Wurie, J., ...Counsell, S.J. (2017). A tract-specific approach to assessing white matter in preterm infants.. NeuroImage, doi:10.1016/j.neuroimage.2017.04.057
Powell, S., Hochuli, R., Arridge, S. (2017). Radiance Monte-Carlo for application of the radiative transport equation in the inverse problem of diffuse optical tomography.
Pratt, R., Melbourne, A., Owen, D., Sokolska, M., Bainbridge, A., Atkinson, D., ...David, A.L. (2017). OP05.08: Novel placental evaluation using multimodal MRI.
Primativo, S., Clark, C., Yong, K.X.X., Firth, N.C., Nicholas, J., Alexander, D., ...Crutch, S.J. (2017). Eyetracking metrics reveal impaired spatial anticipation in behavioural variant frontotemporal dementia. Neuropsychologia, 106 328-340. doi:10.1016/j.neuropsychologia.2017.10.014
Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2017). Estimation and uncertainty quantification of optical properties directly from the photoacoustic time series.
Reis, S., Gazinska, P., Hipwell, J., Mertzanidou, T., Naidoo, K., Williams, N., ...Hawkes, D.J. (2017). Automated Classification of Breast Cancer Stroma Maturity from Histological Images.. IEEE Trans Biomed Eng, doi:10.1109/TBME.2017.2665602
Rickman, J., Duellberg, C., Cade, N.I., Griffin, L.D., Surrey, T. (2017). Steady-state EB cap size fluctuations are determined by stochastic microtubule growth and maturation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114 (13), 3427-3432. doi:10.1073/pnas.1620274114
Roberts, T., Hyare, H., Hipwell, J., Ianus, A., Breen-Norris, J., Panagiotaki, E., ...Brandner, S. (2017). Quantifying Microstructure in Low and High-Grade Brain Tumours Using VERDICT MRI.
Robu, M.R., Edwards, P., Ramalhinho, J.A., Thompson, S., Davidson, B., Hawkes, D., ...Clarkson, M.J. (2017). Intelligent viewpoint selection for efficient CT to video registration in laparoscopic liver surgery. International Journal of Computer Assisted Radiology and Surgery, 1-10. doi:10.1007/s11548-017-1584-7
Rogers, T.W., Jaccard, N., Griffin, L.D. (2017). A deep learning framework for the automated inspection of complex dual-energy x-ray cargo imagery.
Rogers, T.W., Jaccard, N., Protonotarios, E.D., Ollier, J., Morton, E.J., Griffin, L.D. (2017). Threat Image Projection (TIP) into X-ray images of cargo containers for training humans and machines.
Rogers, T.W., Ollier, J., Morton, E.J., Griffin, L.D. (2017). Measuring and correcting wobble in large-scale transmission radiography. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY, 25 (1), 57-77. doi:10.3233/XST-160607
Rojas Villabona, A., Benedetta Pizzini, F., Solbach, T., Ricciardi, G., Sokolska, M., Lemonis, C., ...Foroni, R. (2017). Triple Magnetic Resonance Angiography (Triple-MRA) for Confirmation of Obliteration Following Gamma Knife Radiosurgery for Arterial-Venous Malformations of the Brain.
Rojas Villabona, A., Sokolska, M., De Vita, E., Murphy, M., Solbach, T., Grieve, J., ...Atkinson, D. (2017). Triple Magnetic Resonance Angiography (Triple-MRA) for Planning of Gamma Knife Radiosurgery of Brain Arteriovenous Malformations.
Schneider, C., Johnson, S.P., Gurusamy, K., Cook, R.J., Desjardins, A.E., Hawkes, D.J., ...Walker-Samuel, S. (2017). Identification of liver metastases with probe-based confocal laser endomicroscopy at two excitation wavelengths.. Lasers Surg Med, doi:10.1002/lsm.22617
Shinoda, S., Worrall, D.E., Brostow, G.J. (2017). Virtual Adversarial Ladder Networks For Semi-supervised Learning.
Simmons, L.A.M., Kanthabalan, A., Arya, M., Briggs, T., Barratt, D., Charman, S.C., ...Hu, Y. (2017). The PICTURE study: diagnostic accuracy of multiparametric MRI in men requiring a repeat prostate biopsy. British Journal of Cancer, doi:10.1038/bjc.2017.57
Slator, P.J., Hutter, J., McCabe, L., Dos Santos Gomes, A., Price, A., Panagiotaki, E., ...Alexander, D.C. (2017). Quantifying Placental Microcirculation and Microstructure with Anisotropic IVIM Models.
Slator, P.J., Hutter, J., McCabe, L., Dos Santos Gomes, A., Price, A., Rutherford, M., ...Alexander, D. (2017). Comparison of Diffusion Imaging Microstructure Models of the Human Placenta at 3T.
Slattery, C.F., Zhang, J., Paterson, R.W., Foulkes, A.J.M., Carton, A., Macpherson, K., ...Toussaint, N. (2017). ApoE influences regional white-matter axonal density loss in Alzheimer's disease. Neurobiology of Aging, 57 8-17. doi:10.1016/j.neurobiolaging.2017.04.021
Sudre, C.H., Anson, B.G., Davagnanamd, I., Schmitt, A., Mendelson, A.F., Prados, F., ...Chaturvedi, N. (2017). Bullseye's representation of cerebral white matter hyperintensities.. Journal of neuroradiology. Journal de neuroradiologie, doi:10.1016/j.neurad.2017.10.001
Tagliabue, S., Di Sieno, L., Farina, A., Martinenghi, E., Arridge, S., Martelli, F., ...Dalla Mora, A. (2017). Near-infrared, time-resolved optical tomography with a novel compact system.
Tanno, R., Worrall, D.E., Ghosh, A., Kaden, E., Sotiropoulos, S.N., Criminisi, A., Alexander, D.C. (2017). Bayesian image quality transfer with CNNs: Exploring uncertainty in dMRI super-resolution. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10433 LNCS 611-619. doi:10.1007/978-3-319-66182-7_70
Tarvainen, T., Pulkkinen, A., Cox, B.T., Arridge, S.R. (2017). Utilising the radiative transfer equation in quantitative photoacoustic tomography.
Thompson, S., Meurer, Y., Edwards, P., Ramalhinho, J., Robu, M.R., Stoyanov, D., ...Clarkson, M.J. (2017). On Pattern Selection for Laparoscope Calibration.
Vavourakis, V., Wijeratne, P.A., Shipley, R., Loizidou, M., Stylianopoulos, T., Hawkes, D.J. (2017). A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth.. PLOS Computational Biology, 13 (1), e1005259. doi:10.1371/journal.pcbi.1005259
Worrall, D.E., Garbin, S.J., Turmukhambetov, D., Brostow, G.J. (2017). Interpretable transformations with Encoder-Decoder Networks.
Worrall, D.E., G.a.r.b.i.n., T.u.r.m.u.k.h.a.m.b.e.t.o.v., Brostow, G.J. (2017). Harmonic Networks: Deep Translation and Rotation Equivariance.

2016

Al Awabdh, S., Gupta-Agarwal, S., Sheehan, D.F., Muir, J., Norkett, R., Twelvetrees, A.E., ...Kittler, J.T. (2016). Neuronal activity mediated regulation of glutamate transporter GLT-1 surface diffusion in rat astrocytes in dissociated and slice cultures.. Glia, 64 (7), 1252-1264.
Arridge, S., Beard, P., Betcke, M., Cox, B., Huynh, N., Lucka, F., ...Zhang, E. (2016). Accelerated high-resolution photoacoustic tomography via compressed sensing.. Phys Med Biol, 61 (24), 8908-8940. doi:10.1088/1361-6560/61/24/8908
arridge, S., betcke, M., Cox, B.T., Lucka, F., Treeby, B. (2016). On the Adjoint Operator in Photoacoustic Tomography. Inverse Problems, doi:10.1088/0266-5611/32/11/115012
Bailey, C.E.M., Siow, B., Panagiotaki, E., Hipwell, J.H., Mertzanidou, T., Owen, J., ...Hawkes, D.J. (2016). Microstructure models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study. NMR in Biomedicine, doi:10.1002/nbm.3679
Bailey, C.E.M., Siow, B., Panagiotaki, E., Hipwell, J.H., Pinder, S.E., Alexander, D.C., Hawkes, D.J. (2016). Microstructure models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study.
Baki, M.M., Menys, A., Atkinson, D., Bassett, P., Morley, S., Beale, T., ...Birchall, M.A. (2016). Feasibility of vocal fold abduction and adduction assessment using cine-MRI. European Radiology, 1-9. doi:10.1007/s00330-016-4341-3
Ban, H.Y., Schweiger, M.J., Kavuri, V.C., Cochran, J.M., Xie, L., Busch, D., ...Lee, K. (2016). Heterodyne frequency-domain multispectral diffuse opticaltomography of breast cancer in the parallel-planetransmission geometry. Medical Physics, 43 (7),
Bertolli, O., Arridge, S., Stearns, C.W., Wollenweber, S.D., Hutton, B.F., Thielemans, K. (2016). Sign determination methods for the respiratory signal in data-driven PET gating.
Bonet-Carne, E., Daducci, A., Panagiotaki, E., Johnston, E., Stevens, N., Atkinson, D., ...Alexander, D. (2016). AMICO-VERDICT: Ultrafast fitting algorithm for cancer microstructure characterization, a prostate cancer application.
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Sidhu, H.S.S., Barnes, A., Dikaios, N., Rice, S., Bainbridge, A., Stein, R., ...Punwani, S. (2016). In vivo measurement of tumor T1 relaxation time using a whole body clinically feasible multiple flip angle method can predict responseto chemotherapy.
Super, A., Jaccard, N., Marques, M.P.C., Macown, R.J., Griffin, L.D., Veraitch, F.S., Szita, N. (2016). Real-time monitoring of specific oxygen uptake rates of embryonic stem cells in a microfluidic cell culture device. BIOTECHNOLOGY JOURNAL, 11 (9), 1179-1189. doi:10.1002/biot.201500479
Tanno, R., Ghosh, A., Grussu, F., Kaden, E., Criminisi, A., Alexander, D.C. (2016). Bayesian image quality transfer.
Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A., Zhang, H. (2016). Bingham-NODDI: Mapping anisotropic orientation dispersion of neurites using diffusion MRI. Neuroimage, doi:10.1016/j.neuroimage.2016.01.046
Tarvainen, T., Pulkkinen, A., Cox, B.T., Kaipio, J.P., Arridge, S.R. (2016). Image reconstruction with noise and error modelling in quantitative photoacoustic tomography.
Thielemans, K., Arridge, S. (2016). Adaptive adjustment of the number of subsets during iterative image reconstruction.
Thomas, D.L., Nery, F., Gordon, I., Clark, C.A., Ourselin, S., Golay, X., ...De Vita, E. (2016). Reduction of motion artefacts in multi-shot 3D GRASE Arterial Spin Labelling using autofocus.
Thompson, S.A., Schneider, C., Gurusamy, K., Hawkes, D., Davidson, B., Clarkson, M. (2016). Development, Validation, and Modelling of Image Guidance Systems for Surgery.
Thompson, S., Stoyanov, D., Schneider, C., Gurusamy, K., Ourselin, S., Davidson, B., ...Clarkson, M.J. (2016). Hand-eye calibration for rigid laparoscopes using an invariant point. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 11 (6), 1071-1080. doi:10.1007/s11548-016-1364-9
Tsai, Y.J., Bousse, A., Ehrhardt, M.J., Hutton, B.F., Arridge, S., Thielemans, K. (2016). Performance evaluation of MAP algorithms with different penalties, object geometries and noise levels.
Vavourakis, V., Eiben, B., Hipwell, J.H., Williams, N.R., Keshtgar, M., Hawkes, D.J. (2016). BREAST-CONSERVING SURGERY: A VALIDATED 3D, MULTISCALE, MECHANO -BIOLOGICAL, MODELLING FRAMEWORK FOR SURGICAL PLANNING AND COSMETIC OUTCOME PREDICTION OF BREAST CANCER TREATMENT.
Vavourakis, V., Eiben, B., Hipwell, J.H., Williams, N.R., Keshtgar, M., Hawkes, D.J. (2016). Multiscale mechano-biological finite element modelling of oncoplastic breast surgery - Numerical study towards surgical planning and cosmetic outcome prediction. PLoS ONE, 11 (7), doi:10.1371/journal.pone.0159766
Vavourakis, V., Hipwell, J.H., Hawkes, D.J. (2016). An Inverse Finite Element u/p-Formulation to Predict the Unloaded State of In Vivo Biological Soft Tissues. ANNALS OF BIOMEDICAL ENGINEERING, 44 (1), 187-201. doi:10.1007/s10439-015-1405-5
Vavourakis, V., Wijeratne, P., Shipley, R., Stylianopoulos, T., Hawkes, D.J. (2016). The Mechanical Underpinning of Tumour-induced Angiogenesis and Growth.
Vendhan, K., Bray, T.J., Atkinson, D., Punwani, S., Fisher, C., Sen, D., ...Hall-Craggs, M.A. (2016). A diffusion-based quantification technique for assessment of sacroiliitis in adolescents with enthesitis-related arthritis.. The British Journal of Radiology, 20150775. doi:10.1259/bjr.20150775
von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2016). Free-breathing diffusion tensor imaging of the in vivo human heart - stimulated echo vs. spin echo acquisition.
Wijeratne, P.A., Vavourakis, V., Hipwell, J.H., Voutouri, C., Papageorgis, P., Stylianopoulos, T., ...Hawkes, D.J. (2016). Multiscale modelling of solid tumour growth: the effect of collagen micromechanics. BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 15 (5), 1079-1090. doi:10.1007/s10237-015-0745-2
Wijeratne, P., Vavourakis, V., Hipwell, J.H., Shipley, R., Stylianopoulos, T., Evans, A., ...Hawkes, D.J. (2016). MULTISCALE BIPHASIC MODELLING OF TUMOUR GROWTH: THE EFFECT OF COLLAGEN MICROMECHANICS ON DRUG DELIVERY.
Worrall, D.E., Brostow, G., Wilson, C. (2016). Automated Optic Disk (OD) Localization in The Neonatal Fundus Image.
Worrall, D.E., Wilson, C., Brostow, G.J. (2016). Automated Retinopathy of Prematurity Case Detection with Convolutional Neural Networks.
Wottschel, V., Alexander, D.C., Chard, D.T., Enzinger, C., Filippi, M., Frederiksen, J.L., ...Rovira, A. (2016). Individual prediction of clinically definite MS in patients presenting with clinically isolated syndrome using machine learning.
Zhang, J., Ghosh, A.U.R.O.B.R.A.T.A., Alexander, D.A.N.I.E.L., Zhang, H.U.I. (2016). The lifespan trajectory of white matter microstructure detected by NODDI.
Zhang, J., Slattery, C., Paterson, R., Foulkes, A., Mancini, L., Thomas, D.L., ...Thornton, J. (2016). Neurite Orientation Dispersion and Density Imaging (NODDI) in Young Onset Alzheimer's Disease and Its Syndromic Variants.

2015

Allan, M., Chang, P.-.L., Ourselin, S., Hawkes, D.J., Sridhar, A., Kelly, J., Stoyanov, D. (2015). Image Based Surgical Instrument Pose Estimation with Multi-class Labelling and Optical Flow.
Arridge, S., Cooper, R.J. (2015). Optical Image Reconstruction. In Brain Mapping: An Encyclopedic Reference. (pp. 217-222). .
Arridge, S.R., Kaipio, J.P., Kolehmainen, V., Tarvainen, T. (2015). Optical imaging. In Handbook of Mathematical Methods in Imaging: Volume 1, Second Edition. (pp. 1033-1079). .
Auria, A., Romascano, D., Canales-Rodriguez, E., Wiau, Y., Dirby, T.B., Alexander, D., ...Daducci, A. (2015). ACCELERATED MICROSTRUCTURE IMAGING VIA CONVEX OPTIMISATION FOR REGIONS WITH MULTIPLE FIBRES (AMICO(X)).
Bailey, C., Panagiotaki, E., Tunariu, N., Orton, M.R., Morgan, V.A., Feiweier, T., ...Alexander, D.C. (2015). Modelling tissue microstructure in bone metastases from prostate cancer using VERDICT MRI.
Bohner, G., Gustafsson, N., Cade, N.I., Maurer, S.P., Griffin, L.D., Surrey, T. (2015). Important factors determining the nanoscale tracking precision of dynamic microtubule ends. JOURNAL OF MICROSCOPY, 261 (1), 67-78. doi:10.1111/jmi.12316
Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B., Thielemans, K. (2015). Direct Joint Motion Estimation/Image Reconstruction in Attenuation-Corrected Gated PET/CT Using a Single CT.
Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B., Thielemans, K. (2015). Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT using a Single Attenuation Map.. IEEE Transactions on Medical Imaging, doi:10.1109/tmi.2015.2464156
Bousse, A., Jiao, J., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2015). Joint direct motion estimation/kinetic images reconstruction from gated PET DATA.
Bousse, A., Jiao, J., Thielmans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2015). Joint Direct Motion Estimation/Kinetic Images Reconstruction from Gated PET Data. In Gao, F., Shi, K., Li, S. (Eds.), Computational Methods for Molecular Imaging. (pp. 53-62). Springer.
Bray, T.J.P., Vendhan, K., Atkinson, D., Punwani, S., Ioannou, Y., Sen, D., ...Hall-Craggs, M.A. (2015). Biological validation of quantitative ADC as a biomarker for sacroiliitis in adolescents with enthesitis-related arthritis.
Brigadoi, S., Powell, S., Cooper, R.J., Dempsey, L.A., Arridge, S., Everdell, N., ...Gibson, A.P. (2015). Evaluating real-time image reconstruction in diffuse optical tomography using physiologically realistic test data. BIOMEDICAL OPTICS EXPRESS, 6 (12), 4719-4736. doi:10.1364/BOE.6.004719
Brostow, G. (2015). Human in the loop computer vision. PERCEPTION, 44 360.
Burgos, N., Cardoso, M.J., Modat, M., Punwani, S., Atkinson, D., Arridge, S., ...Ourselin, S. (2015). CT synthesis in the head & neck region for PET/MR attenuation correction: an iterative multi-atlas approach.
Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Dickson, J., Schott, J., ...Ourselin, S. (2015). Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers. European Journal of Nuclear Medicine and Molecular Imaging, 42 (9), 1447-1458. doi:10.1007/s00259-015-3082-x
Burgos, N.F., Cardoso, M.J., Guerreiro, F., Veiga, C., Modat, M., McClelland, J., ...Arridge, S.R. (2015). Robust CT Synthesis for Radiotherapy Planning: Application to the Head & Neck Region.
Burgos, N.F., Cardoso, M.J., Mendelson, A.F., Schott, J.M., Atkinson, D., Arridge, S.R., ...Ourselin, S. (2015). Subject-specific Models for the Analysis of Pathological FDG PET Data.
Campbell-Washburn, A.E., Atkinson, D., Nagy, Z., Chan, R.W., Josephs, O., Lythgoe, M.F., ...Thomas, D.L. (2015). Using the Robust Principal Component Analysis algorithm to remove RF spike artifacts from MR images. Magnetic Resonance in Medicine, doi:10.1002/mrm.25851
Clayden, J.D., Nagy, Z., Weiskopf, N., Alexander, D.C., Clark, C.A. (2015). Microstructural parameter estimation in vivo using diffusion MRI and structured prior information. Magnetic Resonance in Medicine, 75 (4), 1787-1796. doi:10.1002/mrm.25723
Contini, D., Dalla Mora, A., Arridge, S., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Time-domain diffuse optics: towards next generation devices.
Correia, T., Lockwood, N., Kumar, S., Yin, J., Ramel, M.-.C., Andrews, N., ...McGinty, J. (2015). Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish. PLOS ONE, 10 (8), doi:10.1371/journal.pone.0136213
Cruz, G., Atkinson, D., Buerger, C., Schaeffter, T., Prieto, C. (2015). Accelerated motion corrected three-dimensional abdominal MRI using total variation regularized SENSE reconstruction. Magnetic Resonance in Medicine, 75 (4), 1484-1498. doi:10.1002/mrm.25708
Cruz, G., Atkinson, D., Schaeffter, T., Prieto, C. (2015). Navigation-based motion model for motion compensated reconstruction in 3D abdominal MRI.
Dalla Mora, A., Contini, D., Arridge, S., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Towards next-generation time-domain diffuse optics for extreme depth penetration and sensitivity. BIOMEDICAL OPTICS EXPRESS, 6 (5), 1749-1760. doi:10.1364/BOE.6.001749
Dalla Mora, A., Contini, D., Arridge, S.R., Martelli, F., Tosi, A., Boso, G., ...Torricelli, A. (2015). Towards next generation time-domain diffuse optics devices.
Dalla Mora, A., Martinenghi, E., Contini, D., Tosi, A., Boso, G., Durduran, T., ...Torricelli, A. (2015). Fast silicon photomultiplier improves signal harvesting and reduces complexity in time-domain diffuse optics. OPTICS EXPRESS, 23 (11), 13937-13946. doi:10.1364/OE.23.013937
Dempsey, L.A., Cooper, R.J., Powell, S., Edwards, A., Lee, C.-.W., Brigadoi, S., ...Austin, T. (2015). Whole-head functional brain imaging of neonates at cot-side using time-resolved diffuse optical tomography.
Dikaios, N., Alkalbani, J., Abd-Alazeez, M., Sidhu, H., Kirkham, A., Ahmed, H., ...Taylor, S. (2015). Zone-specific logistic regression models improve classification of prostate cancer on multi-parametric MRI. European Radiology, doi:10.1007/s00330-015-3636-0
Dikaios, N., Alkalbani, J., Kirkham, A., Allen, C., Ahmed, H., Emberton, M., ...Atkinson, D. (2015). Support Vector Neural Networks versus Logistic Regression MR based diagnostic model for classification of transition zone prostate cancer.
Dikaios, N., Punwani, S., Atkinson, D. (2015). Direct parametric reconstruction from (k, t)-space data in dynamic contrast enhanced MRI.
Ehrhardt, M., Thielmans, K., Pizarro, L., Atkinson, D., Ourselin, S., Hutton, B., Arridge, S. (2015). Joint reconstruction of PET-MRI by exploiting structural similarity. Inverse Problems, 31 doi:10.1088/0266-5611/31/1/015001
Erlandsson, K., Dickson, J., Arridge, S., Atkinson, D., Ourselin, S., Hutton, B. (2015). MR Imaging–Guided partial volume correction of PET data in PET/MR imaging. PET Clinics, 11 161-177. doi:10.1016/j.cpet.2015.09.002
Erlandsson, K., Liljeroth, M., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2015). Improved parameter-estimation with combined PET-MRI kinetic modelling.
Farina, A., Lepore, M., Di Sieno, L., Dalla Mora, A., Ducros, N., Pifferi, A., ...D'Andrea, C. (2015). Diffuse optical tomography by using time-resolved single pixel camera.
Ferizi, U., Schneider, T., Witzel, T., Wald, L.L., Zhang, H., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2015). White matter compartment models for in vivo diffusion MRI at 300 mT/m. NEUROIMAGE, 118 468-483. doi:10.1016/j.neuroimage.2015.06.027
Figini, M., Alexander, D.C., Redaelli, V., Fasano, F., Grisoli, M., Baselli, G., ...Bizzi, A. (2015). Mathematical models for the diffusion magnetic resonance signal abnormality in patients with prion diseases. NEUROIMAGE-CLINICAL, 7 142-154. doi:10.1016/j.nicl.2014.11.017
Ganepola, T., Nagy, Z., Alexander, D., Sereno, M. (2015). An unsupervised group average cortical parcellation using HARDI data.
Godard, C., Hedman, P., Li, W., Brostow, G.J. (2015). Multi-view Reconstruction of Highly Specular Surfaces in Uncontrolled Environments.
Griffin, L.D., Sutcliffe, A.G., Bradbury, K., Kumble, S., Mylonas, D., Baker, A. (2015). Colour and spectral reflectance of stools from normal neonatal babies. Color Research and Application, 40 (6), 585-591. doi:10.1002/col.21919
Griffin, L.D., Sutcliffe, A.G., Bradbury, K., Kumble, S., Mylonas, D., Baker, A. (2015). Colour and spectral reflectance of stools from normal neonatal babies. COLOR RESEARCH AND APPLICATION, 40 (6), 585-591. doi:10.1002/col.21919
Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Newcombe, J., Zhang, H., ...Wheeler-Kingshott, C.A.M. (2015). Histological metrics confirm microstructural characteristics of NODDI indices in multiple sclerosis spinal cord.
Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Tur, C., Newcombe, J., ...Wheeler-Kingshott, C.A.M. (2015). Quantitative histological validation of NODDI MRI indices of neurite morphology in multiple sclerosis spinal cord.
Grussu, F., Schneider, T., Yates, R.L., Tachrount, M., Zhang, H., Alexander, D.C., ...Wheeler-Kingshott, C.A.M. (2015). Quantitative histological correlates of NODDI orientation dispersion estimates in the human spinal cord.
Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2015). Neurite orientation dispersion and density imaging of the cervical cord in vivo.
Grussu, F., Schneider, T., Zhang, H., Alexander, D., Wheeler-Kingshott, C. (2015). Neurite orientation dispersion and density imaging of the healthy cervical spinal cord in vivo. Neuroimage, 111 590-601. doi:10.1016/j.neuroimage.2015.01.045
Gryka, M., Terry, M., Brostow, G.J. (2015). Learning to Remove Soft Shadows. ACM Transactions on Graphics,
Hayashi, Y., Misawa, K., Oda, M., Hawkes, D.J., Mori, K. (2015). Clinical application of a surgical navigation system based on virtual laparoscopy in laparoscopic gastrectomy for gastric cancer. International Journal of Computer Assisted Radiology and Surgery, 11 (5), 827-836. doi:10.1007/s11548-015-1293-z
Hoad, C., Menys, A., Garsed, K., Marciani, L., Hamy, V., Murray, K., ...Spiller, R. (2015). Colon wall motility: comparison of novel quantitative semi-automatic measurements using cine-MRI. Neurogastroenterology and Motility, doi:10.1111/nmo.12727
H.o.c.h.u.l.i., Powell, S., Arridge, S., Cox, B. (2015). Forward and Adjoint Radiance Monte Carlo Models for Quantitative Photoacoustic Imaging.
Hochuli, R., Powell, S., Arridge, S., Cox, B. (2015). Forward and Adjoint Radiance Monte Carlo Models for Quantitative Photoacoustic Imaging. PHOTONS PLUS ULTRASOUND: IMAGING AND SENSING 2015, 9323 doi:10.1117/12.2081407
Huen, I., Beckmann, J., Suzuki, Y., Zuluaga, M.A., Melbourne, A., van Osch, M.J.P., ...Golay, X. (2015). Is adult brain vessel compliance affected by extreme prematurity?.
Huen, I., Beckmann, J., Suzuki, Y., Zuluaga, M.A., Melbourne, A., van Osch, M.J.P., ...Golay, X. (2015). DOES EXTREME PREMATURITY AFFECT ADULT BRAIN VESSEL COMPLIANCE? A PRELIMINARY MRI STUDY.
Huynh, N., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2015). A real-time ultrasonic field mapping system using a Fabry Perot single pixel camera for 3D photoacoustic imaging.
Ianus, A., Drobnjak, I., Alexander, D. (2015). Model-based estimation of microstructure parameters from diffusion MRI in the presence of microscopic anisotropy and size dispersion.
Ianus, A., Drobnjak, I., Alexander, D. (2015). Model-based estimation of microstructure parameters from diffusion MRI data in a substrate with microscopic anisotropy and a distribution of pore sizes.
Ianus, A., Drobnjak, I., Shemesh, N., Alexander, D. (2015). Metrics of microscopic anisotropy: a comparison study.
Jiao, J., Markiewicz, P., Burgos, N., Atkinson, D., Hutton, B., Arridge, S., Ourselin, S. (2015). Detail-preserving PET reconstruction with sparse image representation and anatomical priors. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 540-551. doi:10.1007/978-3-319-19992-4_42
Jiao, J., Markiewicz, P., Burgos, N., Atkinson, D., Hutton, B., Arridge, S., Ourselin, S. (2015). Detail-Preserving PET reconstruction with sparse image representation and anatomical priors.
Johnsen, S.F. (2015). Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation.
Johnsen, S.F., Taylor, Z.A., Clarkson, M.J., Hipwell, J., Modat, M., Eiben, B., ...Hawkes, D.J. (2015). NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 10 (7), 1077-1095. doi:10.1007/s11548-014-1118-5
Johnsen, S.F., Taylor, Z.A., Han, L., Hu, Y., Clarkson, M.J., Hawkes, D.J., Ourselin, S. (2015). Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. International Journal of Computer Assisted Radiology and Surgery, 1-19. doi:10.1007/s11548-014-1142-5
Kaden, E., Kruggel, F., Alexander, D.C. (2015). Quantitative mapping of the per-axon diffusion coefficients in brain white matter. Magnetic Resonance in Medicine, 75 (4), 1752-1763. doi:10.1002/mrm.25734
Lacher, R.M., Hipwell, J.H., Williams, N.R., Keshtgar, M.R., Hawkes, D.J., Stoyanov, D. (2015). Low-cost surface reconstruction for aesthetic results assessment and prediction in breast cancer surgery.
Latifoltojar, A., Dikaios, N., Ridout, A., Moore, C., Illing, R., Kirkham, A., ...Allen, C. (2015). Evolution of multi-parametric MRI quantitative parameters following transrectal ultrasound-guided biopsy of the prostate. Prostate Cancer and Prostatic Diseases, 1-9. doi:10.1038/pcan.2015.33
Lehtikangas, O., Tarvainen, T., Kim, A.D., Arridge, S.R. (2015). Finite element approximation of the radiative transport equation in a medium with piece-wise constant refractive index. JOURNAL OF COMPUTATIONAL PHYSICS, 282 345-359. doi:10.1016/j.jcp.2014.11.025
Liljeroth, M., Erlandsson, K., Fraioli, F., Thomas, D., De Vita, E., Hutton, B., ...Atkinson, D. (2015). Dual-modality evaluation of tumour vasculature, morphology and metabolism via Dynamic Susceptibility Contrast MRI and FluoroEthyl Choline-PET using simultaneous PET/MR.
Lorenzi, M., Ziegler, G., Alexander, D.C., Ourselin, S. (2015). Efficient gaussian process-based modelling and prediction of image time series. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 626-637. doi:10.1007/978-3-319-19992-4_49
Lorenzi, M., Ziegler, G., Alexander, D.C., Ourselin, S. (2015). Modelling Non-stationary and Non-separable Spatio-Temporal Changes in Neurodegeneration via Gaussian Process Convolution.
Malone, E., dos Santos, G.S., Holder, D., Arridge, S. (2015). A Reconstruction-Classification Method for Multifrequency Electrical Impedance Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING, 34 (7), 1486-1497. doi:10.1109/TMI.2015.2402661
Manber, R., Atkinson, D., Thielemans, K., Hutton, B., Barnes, A., O'Meara, C., ...Arridge, S. (2015). PRACTICAL PET RESPIRATORY MOTION CORRECTION IN CLINICAL SIMULTANEOUS PET/MR.
Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). Practical PET respiratory motion correction in clinical simultaneous PET/MR. Journal of Nuclear Medicine, 56 (6), 890-896. doi:10.2967/jnumed.114.151779
Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). Practical PET respiratory motion correction in clinicalPET/MR.
Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). MR Image-based PET Respiratory Motion Correction in PET/MR.
Markiewicz, P., Thielemans, K., Atkinson, D., Arridge, S., Hutton, B., Ourselin, S. (2015). Rapid workflow of mMR PET list-mode data processing using CUDA.
Melbourne, A., Eaton-Rosen, Z., Owen, D., Cardoso, J., Beckmann, J., Atkinson, D., ...Ourselin, S. (2015). Measuring Cortical Neurite-Dispersion and Perfusion in Preterm-Born Adolescents Using Multi-modal MRI.
Menys, A., Makanyanga, J., Plumb, A., Bhatnagar, G., Atkinson, D., Emmanuel, A., Taylor, S.A. (2015). Aberrant motility in unaffected small bowel is linked to inflammatory burden and patient symptoms in Crohn's disease.. Inflammatory Bowel Diseases, 22 (2), 424-432. doi:10.1097/MIB.0000000000000601
Menys, A., Tutein Nolthenius, C., Puylaert, C., Makanyanga, J., Gryspeerdt, E., Bhatnagar, G., ...Taylor, S. (2015). Quantified terminal ileal motility as a biomarker of Crohn’s Disease activity assessed using Magnetic Resonance Enterography: A prospective study.
Monszpart, A., Mellado, N., Brostow, G.J., Mitra, N.J. (2015). RAPter: Rebuilding Man-made Scenes with Regular Arrangements of Planes. ACM SIGGRAPH Computer Graphics, doi:10.1145/2766995
Morin, R., Eiben, B., Bidaut, L., Hipwell, J., Evans, A., Hawkes, D.J. (2015). 3D ULTRASOUND SIMULATION BASED ON A BIOMECHANICAL MODEL OF PRONE MRI IN BREAST CANCER IMAGING.
Mozumder, M., Tarvainen, T., Seppanen, A., Nissila, I., Arridge, S.R., Kolehmainen, V. (2015). Nonlinear approach to difference imaging in diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 20 (10), doi:10.1117/1.JBO.20.10.105001
Mylonas, D., Purver, M., Sadrzadeh, M., MacDonald, L., griffin, L. (2015). The Use of English Colour Terms in Big Data.
Nedjati-Gilani, G., Alexander, D.C. (2015). Tissue Microstructure Imaging with Diffusion MRI. In Brain Mapping: An Encyclopedic Reference. (pp. 277-285). .
Norris, F.C., Siow, B.M., Cleary, J.O., Wells, J.A., De Castro, S.C.P., Ordidge, R.J., ...Alexander, D.C. (2015). Diffusion microscopic MRI of the mouse embryo: Protocol and practical implementation in the splotch mouse model.. MAGNETIC RESONANCE IN MEDICINE, 73 (2), 731-739. doi:10.1002/mrm.25145
Ourselin, S., Alexander, D.C., Westin, C.F., Cardoso, M.J. (2015). Preface. 24th International Conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015. Proceedings. Information processing in medical imaging : proceedings of the ... conference, 24 V-VII.
Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H., O'Callaghan, J., Freeman, A., ...Alexander, D.C. (2015). Microstructural characterisation of normal and malignant human prostate tissue with VERDICT MRI. Investigative Radiology, 50 (4), 218-227. doi:10.1097/RLI.0000000000000115
Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H.U., O'Callaghan, J., Freeman, A., ...Alexander, D.C. (2015). Microstructural characterisation of normal and malignant human prostate tissue with vascular, extracellular, and restricted diffusion for cytometry in tumours magnetic resonance imaging.. Investigative Radiology, 50 (4), 218-227. doi:10.1097/RLI.0000000000000115
Panagiotaki, E., Ianus, A., Johnston, E., Chan, R., Stevens, N., Atkinson, D., ...Alexander, D. (2015). Optimised VERDICT MRI protocol for prostate cancer characterisation.
Panagiotaki, E., Ianus, A., Johnston, E., Chan, R.W., Atkinson, D., P.u.n.w.a.n.i., ...Alexander, D. (2015). Optimised VERDICT MRI protocol for prostate cancer characterisation.
Plumb, A.A.O., Menys, A., Makanyanga, J., Pendse, D., Bhatnagar, G., Atkinson, D., Taylor, S.A. (2015). Abdominal symptoms in Crohn’s disease are associated with aberrant global small bowel motility in non-inflamed bowel..
Plumb, A.A.O., Menys, A., Tutein Nolthenius, C., Puylaert, C., Tielbeek, J.A.W., Makanyanga, J., ...Atkinson, D. (2015). Prospective analysis of quantified terminal ileal motility using magnetic resonance enterography as a biomarker of active inflammation in Crohn’s disease..
Powell, S., Arridge, S.R., Leung, T.S. (2015). First-harmonic sensitivity functions for a linearised diffusion model of ultrasound-modulated optical tomography. PHOTONS PLUS ULTRASOUND: IMAGING AND SENSING 2015, 9323 doi:10.1117/12.2077435
Powell, S., Cooper, R.J., Hebden, J.C., Arridge, S.R. (2015). Dynamic image reconstruction in time-resolved diffuse optical tomography.
Protonotarios, E., Griffin, L. (2015). Discrimination scales do not account for large perceptual differences. PERCEPTION, 44 (4), 465.
Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2015). Quantitative photoacoustic tomography using illuminations from a single direction. JOURNAL OF BIOMEDICAL OPTICS, 20 (3), doi:10.1117/1.JBO.20.3.036015
Reis, S., Eiben, B., Mertzanidou, T., Hipwell, J., Hermsen, M., van der Laak, J., ...Hawkes, D. (2015). Minimum Slice Spacing Required To Reconstruct 3D Shape For Serial Sections Of Breast Tissue For Comparison With Medical Imaging.
Rogers, T.W., Jaccard, N., Morton, E.J., Griffin, L.D. (2015). Detection of cargo container loads from X-ray images.
Sari, H., Erlandsson, K., Law, I., Larsson, H., Ourselin, S., Arridge, S., ...Hutton, B. (2015). Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel PVC method.
Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Ourselin, S., Arridge, S., Hutton, B.F. (2015). Incorporation of MRI-AIF Information For Improved Kinetic Modelling of Dynamic PET Data. IEEE Transactions on Nuclear Science,
Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Ourselin, S., Arridge, S., Hutton, B.F. (2015). Incorporation of MRI-AIF information for improved kinetic modeling of dynamic PET data.. IEEE Transactions on Nuclear Science,
Schneider, C., Desjardins, A.E., Gurusamy, K., Hawkes, D.J., Davidson, B.R. (2015). Laparoscopic Manipulation of a Probe-based Confocal Laser Endomicroscope Using a Steerable Intravascular Catheter. SURGICAL LAPAROSCOPY ENDOSCOPY & PERCUTANEOUS TECHNIQUES, 25 (2), E83-E85.
Schneider, C., Thompson, S., Totz, J., Song, Y., Johnsen, S., Stoyanov, D., ...Clarkson, M. (2015). EVALUATION OF A NOVEL SYSTEM FOR IMAGE GUIDED LAPAROSCOPIC LIVER SURGERY IN AN ANIMAL MODEL AND FIRST CLINICAL EXPERIENCE.
Schneider, T., Nejati-Gilani, G., Tachrount, M., Ying, L., Hill, A.M., Ciccarelli, O., ...Wheeler-Kingshott, C.A.M. (2015). Diffusion MRI reveals tissue specific changes in early and late stages of degeneration within the spinal cord..
Shemesh, N., Ianus, A., Alexander, D., Drobnjak, I. (2015). Double Oscillating Diffusion Encoding (DODE) augments microscopic anisotropy contrast.
Smigaj, W., Arridge, S., Betcke, T., Phillips, J., Schweiger, M. (2015). Solving Boundary Integral Problems with BEM++. ACM Transactions on Mathematical Software, doi:10.1145/2590830
Song, Y., Totz, J., Thompson, S., Johnsen, S., Barratt, D., Schneider, C., ...Hawkes, D. (2015). Locally rigid, vessel-based registration for laparoscopic liver surgery. INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 10 (12), 1951-1961. doi:10.1007/s11548-015-1236-8
Stoeck, C.T., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). First and second order motion compensated spin-echo Diffusion Tensor Imaging of the human heart.
Stoeck, C.T., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). Second-order motion-compensated spin echo diffusion tensor imaging of the human heart.. Magnetic Resonance in Medicine, n/a. doi:10.1002/mrm.25784
Stoeck, C., von Deuster, C., Genet, M., Atkinson, D., Kozerke, S. (2015). Second order motion compensated spin-echo diffusion tensor imaging of the human heart.
Thompson, S., Totz, J., Song, Y., Stoyanov, D., Ourselin, S., Hawkes, D., Clarkson, M. (2015). Accuracy validation of an image guided laparoscopy system for liver resection.
Torrealdea, F., Rega, M., Evans, V., Punwani, S., Atkinson, D., Golay, X. (2015). Optimisation of glucoCEST MRI signal for applications in tumours.
Torrealdea, F., Rega, M., Evans, V., Punwani, S., Atkinson, D., Golay, X. (2015). Optimisation of glucoCEST MRI signal for applications in tumors.
Usman, M., Atkinson, D., Heathfield, E., Greil, G., Schaeffter, T., Prieto, C. (2015). Whole left ventricular functional assessment from two minutes free breathing multi-slice CINE acquisition. Physics in Medicine and Biology, 60 (7), N93-N107. doi:10.1088/0031-9155/60/7/N93
van't Wout, E., Gelat, P., Betcke, T., Arridge, S. (2015). A fast boundary element method for the scattering analysis of high-intensity focused ultrasound. JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 138 (5), 2726-2737. doi:10.1121/1.4932166
Vendhan, K., Bray, T.J.P., Atkinson, D., Punwani, S., Ioannou, Y., Sen, D., ...Hall-Craggs, M.A. (2015). The spectrum of ADC values in normal adolescent sacroiliac joints.
von Deuster, C., Stoeck, C., Genet, M., Toussaint, N., Atkinson, D., Kozerke, S. (2015). A reference dataset of in-vivo human left-ventricular fiber architecture in systole and diastole.
von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2015). A reference dataset of in-vivo human left-ventricular fiber architecture in systole and diastole.
von Deuster, C., Stoeck, C.T., Genet, M., Atkinson, D., Kozerke, S. (2015). Spin echo versus stimulated echo diffusion tensor imaging of the in vivo human heart. Magnetic Resonance in Medicine, doi:10.1002/mrm.25998
Waithe, D., Rennert, P., Brostow, G., Piper, M.D.W. (2015). QuantiFly: Robust Trainable Software for Automated Drosophila Egg Counting. PLOS ONE, 10 (5), doi:10.1371/journal.pone.0127659
White, M.J., Thornton, J.S., Hawkes, D.J., Hill, D.L.G., Kitchen, N., Mancini, L., ...Yousry, T. (2015). Design, operation, and safety of single-room interventional MRI suites: practical experience from two centers.. JOURNAL OF MAGNETIC RESONANCE IMAGING, 41 (1), 34-43. doi:10.1002/jmri.24577
Young, A.L., Oxtoby, N.P., Huang, J., Marinescu, R.V., Daga, P., Cash, D.M., ...Alexander, D.C. (2015). Multiple orderings of events in disease progression. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 711-722. doi:10.1007/978-3-319-19992-4_56
Young, A.L., Oxtoby, N.P., Ourselin, S., Schott, J.M., Alexander, D.C. (2015). A simulation system for biomarker evolution in neurodegenerative disease. MEDICAL IMAGE ANALYSIS, 26 (1), 47-56. doi:10.1016/j.media.2015.07.004

2014

Alessandro, D., Canales-Rodriguez, E.J., Zhang, H., Dyrby, T.B., Alexander, D.C., Thiran, J.-.P. (2014). Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data. Neuroimage, 105 32-44. doi:10.1016/j.neuroimage.2014.10.026
Alexander, D., Assaf, Y. (2014). Advanced methods to study white matter microstructure. In Cohen-Adad, J., Wheeler-Kingshott, C.A.M. (Eds.), Quantitative MRI of the Spinal Cord. Academic Press.
Alexander, D.C., Zikic, D., Zhang, J., Zhang, H., Criminisi, A. (2014). Image quality transfer via random forest regression: Applications in diffusion MRI. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014. (pp. 225-232). .
Allan, M., Thompson, S., Clarkson, M., Ourselin, S., Hawkes, D., Kelly, J., Stoyanov, D. (2014). 2D-3D pose tracking of rigid instruments in minimally invasive surgery.
Arridge, S.R., Betcke, M.M., Harhanen, L. (2014). Iterated preconditioned LSQR method for inverse problems on unstructured grids. INVERSE PROBLEMS, 30 (7), doi:10.1088/0266-5611/30/7/075009
Bailey, C., Vinnicombe, S., Panagiotaki, E., Waugh, S.A., Hipwell, J.H., Alexander, D.C., ...Evans, A. (2014). Modeling vascularity in breast cancer and surrounding stroma using diffusion MRI and intravoxel incoherent motion.
Bailey, C., Vinnicombe, S., Panagiotaki, E., Waugh, S., Hipwell, J.H., Whelehan, P., ...Hawkes, D.J. (2014). Modelling vasculature and cellular restriction in breast tumours using diffusion MRI.
Barnes, A., Morgan, C., Bainbridge, A., Smith, L., Rice, S., Atkinson, D., Punwani, S. (2014). Repeatability of whole-body T1 mapping using B1 corrected T1 mDIXON imaging.
Batchelor, P.G., Moakher, M., Atkinson, D., Calamante, F., Connelly, A. (2014). A rigorous framework for diffusion tensor calculus. Magnetic Resonance in Medicine, 53 (1), 221-225. doi:10.1002/mrm.20334
Bousse, A., Jiao, J., Erlandsson, K., Pizarro, L., Thielemans, K., Atkinson, D., ...Hutton, B. (2014). 4-D PET joint image reconstruction/non-rigid motion estimation with limited MRI prior information.
Bousse, A., Jiao, J., Pizarro, L., Thielemans, K., Atkinson, D., Ourselin, S., ...Hutton, B.F. (2014). An algorithm for direct 4-D PET image reconstruction/non-rigid motion estimation with limited MRI prior information.
Bousse, A., Jiao, J., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Joint direct motion estimation/kinetic images reconstruction from gated PET data.
Bragman, F.J.S., McClelland, J.R., Modat, M., Ourselin, S., Hurst, J.R., Hawkes, D.J. (2014). Multi-scale Analysis of Imaging Features and Its Use in the Study of COPD Exacerbation Susceptible Phenotypes. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2014, PT III, 8675 417-424.
Bragman, F.J.S., McClelland, J.R., Modat, M., Ourselint, S., Hurst, J.R., Hawkes, D.J. (2014). Multi-scale analysis of imaging features and its use in the study of COPD exacerbation susceptible phenotypes.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 17 (Pt 3), 417-424.
Brigadoi, S., Aljabar, P., Kuklisova-Murgasova, M., Arridge, S.R., Cooper, R.J. (2014). A 4D neonatal head model for diffuse optical imaging of pre-term to term infants.. NEUROIMAGE, 100 385-394. doi:10.1016/j.neuroimage.2014.06.028
Burgos, N., Cardoso, M.J., Thielemans, K., Duncan, J.S., Atkinson, D., Arridge, S.R., ...Ourselin, S. (2014). Attenuation correction synthesis for hybrid PETMR scanners: Validation for brain study applications.
Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Pedemonte, S., Dickson, J., ...Schott, J.M. (2014). Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 33 (12), 2332-2341. doi:10.1109/TMI.2014.2340135
Burgos, N., Thielemans, K., Cardoso, M.J., Markiewicz, P., Jiao, J., Dickson, J., ...Hutton, B.F. (2014). Effect of Scatter Correction When Comparing Attenuation Maps: Application to Brain PET/MR.
Butt, S., Menys, A., Atkinson, D., Plumb, A., Taylor, S., Zarate, N., Emmanuel, A. (2014). Quantitative assessment of global small bowel motility in Chronic Intestinal Pseudo-Obstruction and controls: A Preliminary Study.
Chan, R.W., Deuster, C.V., Stoeck, C.T., Harmer, J., Kozerke, S., Atkinson, D. (2014). High-Resolution diffusion tensor imaging (DTI) of the human kidneys using a free-breathing multi-slice targeted-FOV approach.
Chan, R.W., von Deuster, C., Giese, D., Stoeck, C.T., Harmer, J., Aitken, A.P., ...Kozerke, S. (2014). Characterization and correction of eddy-current artifacts in unipolar and bipolar diffusion sequences using magnetic field monitoring. JOURNAL OF MAGNETIC RESONANCE, 244 74-84. doi:10.1016/j.jmr.2014.04.018
Clarkson, M.J., Zombori, G., Thompson, S., Totz, J., Song, Y., Espak, M., ...Ourselin, S. (2014). The NifTK Software Platform for Image Guided Interventions. International Journal of Computer Assisted Radiology and Surgery,
Cruz, G., Atkinson, D., Kolbitsch, C., Schaeffter, T., Prieto, C. (2014). Comparison of Non-Rigid Motion Compensated Reconstructions for 3D Abdominal MRI.
Deuster, C.V., Stoeck, C., Buehrer, M., Harmer, J., Chan, R.W., Atkinson, D., Kozerke, S. (2014). Free-breathing cardiac DTI with simultaneous multi-slice excitation.
Dikaios, N., Alkalbani, J., Sidhu, H., Fujiwara, T., Abd-Alazeez, M., Kirkham, A., ...Halligan, S. (2014). Logistic regression model for diagnosis of transition zone prostate cancer on multi-parametric MRI. European Radiology, 25 (2), 523-532. doi:10.1007/s00330-014-3386-4
Dikaios, N., Arridge, S., Hamy, V., Punwani, S., Atkinson, D. (2014). Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhanced MRI.. Medical Image Analysis, 18 (7), 989-1001. doi:10.1016/j.media.2014.05.001
Dikaios, N., Atkinson, D. (2014). Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhancement MRI. Medical Image Analysis, 18 (7), 989-1001. doi:10.1016/j.media.2014.05.001
Dikaios, N., Tremoulheac, B., Menys, A., Arridge, S., Atkinson, D. (2014). Discrete shearlets as a sparsifying transform in a split Bregman reconstruction of low-rank plus sparse component from undersampled (k, t)-space small bowel data.
Drobnjak, I., Cruz, G., Alexander, D.C. (2014). Corrigendum to "Optimising oscillating waveform-shape for pore size sensitivity in diffusion-weighted MR" [Micropor. Mesopor. Mater. 178 (2013) 11-14] (DOI:10.1016/j.micromeso.2013.03.004). MICROPOROUS AND MESOPOROUS MATERIALS, 196 360. doi:10.1016/j.micromeso.2014.03.001
Ehrhardt, M.J., Arridge, S.R. (2014). Vector-Valued Image Processing by Parallel Level Sets. Image Processing, IEEE Transactions on, 23 9-18. doi:10.1109/TIP.2013.2277775
Ehrhardt, M.J., Thielemans, K., Pizarro, L., Markiewicz, P., Atkinson, D., Ourselin, S., ...Arridge, S.R. (2014). Joint Reconstruction of PET-MRI by Parallel Level Sets.
Ehrhardt, M., Thielemans, K., Pizarro, L., Markiewicz, P., Atkinson, D., Ourselin, S., ...Arridge, S. (2014). Correct A Priori Information Modelling for Sparse MRI Reconstruction.
Eiben, B., Vavourakis, V., Hipwell, J.H., Kabus, S., Lorenz, C., Buelow, T., Hawkes, D.J. (2014). Breast deformation modelling: comparison of methods to obtain a patient specific unloaded configuration.
Ferizi, U., Schneider, T., Panagiotaki, E., Tariq, M., Zhang, H., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Ranking diffusion MRI models for fibre dispersion using in vivo human brain data..
Frangi, A., Friboulet, D., Ayache, N., Delingette, H., Glatard, T., Hoogendoorn, C., ...Martelli, Y. (2014). Image-based modelling. In Coveney, P., Diaz-Zuccarini, V., Hunter, P., Viceconti, M. (Eds.), Computational Biomedicine. Oxford University Press.
Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B.F. (2014). Efficient determination of the uncertainty for the optimization of SPECT system design: a subsampled fisher information matrix.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 33 (3), 618-635. doi:10.1109/TMI.2013.2292805
Griffin, L.D. (2014). Metamerism? What metamerism?. PERCEPTION, 43 (10), 1117.
Grove, J., Metcalf, D.J., Knight, A.E., Wavre-Shapton, S.T., Sun, T., Protonotarios, E.D., ...Marsh, M. (2014). Flat clathrin lattices: stable features of the plasma membrane.. MOLECULAR BIOLOGY OF THE CELL, 25 (22), 3581-3594. doi:10.1091/mbc.E14-06-1154
Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2014). Single-shell diffusion MRI NODDI with in vivo cervical cord data.
Hamy, V., Modat, M., Dikaios, N., Cleary, J., Punwani, S., Shipley, R., ...Melbourne, A. (2014). Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function.
Han, L., Hawkes, D.J., Barratt, D.C. (2014). A hybrid biomechanical model-based image registration method for sliding objects.
Han, L., Hipwell, J., Eiben, B., Barratt, D.C., Ourselin, S., Hawkes, D.J. (2014). A Non-linear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images. IEEE Transactions on Medical Imaging, doi:10.1109/TMI.2013.2294539
Harmer, J., Chan, R.W., Stoeck, C.T., Deuster, C.V., Atkinson, D., Kozerke, S. (2014). Correction of off-resonance distortions in in-vivo cardiac diffusion tensor imaging.
Helbren, E., Roth, H.R., Hampshire, T.E., Pickhardt, P.J., Taylor, S.A., Hawkes, D.J., Halligan, S. (2014). CT colonography: clinical evaluation of a method for automatic coregistration of polyps at follow-up surveillance studies.. RADIOLOGY, 273 (2), 417-424. doi:10.1148/radiol.14140473
Hoad, C., Hamy, V., Garsed, K., Marciani, L., Spiller, R., Taylor, S., ...Menys, A. (2014). Preliminary investigations of colonic motility from Cine MRI; use of registration techniques for quantitative analysis.
Huynh, N., Zhang, E., Betcke, M., Arridge, S., Beard, P., Cox, B. (2014). Patterned interrogation scheme for compressed sensing photoacoustic imaging using a Fabry Perot planar sensor.
Jaccard, N., Griffin, L.D., Keser, A., Macown, R.J., Super, A., Veraitch, F.S., Szita, N. (2014). Automated method for the rapid and precise estimation of adherent cell culture characteristics from phase contrast microscopy images.. BIOTECHNOLOGY AND BIOENGINEERING, 111 (3), 504-517. doi:10.1002/bit.25115
Jaccard, N., Macown, R.J., Super, A., Griffin, L.D., Veraitch, F.S., Szita, N. (2014). Automated and online characterization of adherent cell culture growth in a microfabricated bioreactor.. JALA, 19 (5), 437-443. doi:10.1177/2211068214529288
Jaccard, N., Rogers, T.W., Griffin, L.D. (2014). Automated detection of cars in transmission X-ray images of freight containers.
Jacobs, J.G., Panagiotaki, E., Alexander, D.C. (2014). Gleason Grading of Prostate Tumours with Max-Margin Conditional Random Fields.
Jiao, J., Bousse, A., Thielemans, K., Markiewicz, P., Burgos, N., Atkinson, D., ...Ourselin, S. (2014). Joint parametric reconstruction and motion correction framework for dynamic PET data.
Johnson, S.P., Schneider, C., Desjardins, A., Walker-Samuel, S., Hawkes, D. (2014). Confocal fluorescence endomicroscopy in vivo for the detection of tumour microenvironment and healthy tissue margin. EUROPEAN JOURNAL OF CANCER, 50 S168-S169.
Jones, G., Clancy, N., Arridge, S., Elson, D., Stoyanov, D. (2014). Deblurring multispectral laparoscopic images.
Jones, G., Clancy, N., Arridge, S., Elson, D., Stoyanov, D. (2014). Deblurring multispectral laparoscopic images.
Kaden, E., Kruggel, F., Alexander, D.C. (2014). Bayesian Estimation of the Axonal Diffusion Coefficients in Brain White Matter.
Kakkar, L., Atkinson, D., Chan, R.W., Drobnjak, I. (2014). Imaging brain microstructure: Application of oscillating gradient diffusion sequences on a clinical MRI scanner.
Kazantsev, D., Ourselin, S., Hutton, B.F., Lionheart, W.R.B., Arridge, S.A. (2014). A novel technique to incorporate structural prior information into multi-modal tomographic reconstruction. Inverse problems, 30
Kowalik, G., Knight, D., Steeden, J., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of cardiac time intervals using high temporal resolution real-time spiral phase contrast with UNFOLD-SENSE.
Kowalik, G., Knight, D., Steeden, J., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of Cardiac Time Intervals Using High Temporal Resolution Real-Time Spiral Phase Contrast with UNFOLD-SENSE.
Kowalik, G.T., Knight, D.S., Steeden, J.A., Tann, O., Odille, F., Atkinson, D., ...Muthurangu, V. (2014). Assessment of cardiac time intervals using high temporal resolution real-time spiral phase contrast with UNFOLDed-SENSE. Magnetic Resonance in Medicine, 73 (2), 749-756. doi:10.1002/mrm.25183
Kumar, S., Lockwood, N., Ramel, M.C., Correia, T., Ellis, M., Alexandrov, Y., ...Dallman, M.J. (2014). In vivo multiplexed OPT and FLIM OPT of an adult zebrafish cancer disease model.
Kunz, N., Zhang, H., Vasung, L., O'Brien, K.R., Assaf, Y., Lazeyras, F., ...Hüppi, P.S. (2014). Assessing white matter microstructure of the newborn with multi-shell diffusion MRI and biophysical compartment models.. Neuroimage, doi:10.1016/j.neuroimage.2014.03.057
Latifoltojar, A., Dikaios, N., Ridout, A., Moore, C., Illing, R., Kirkham, A., ...Atkinson, D. (2014). Transrectal ultrasound guided biopsy: effect on natural history of multi-parametric MRI signal and derived quantitative parameters.
Lopez-Tovar, H., Brostow, G.J. (2014). Learning Sketch-based 3D Modelling From A User's Sketching Gestures.
Lopez-Tovar, H., Brostow, G.J. (2014). Learning Sketch-based 3D Modelling From A User's Sketching Gestures.
Lundell, H., Dyrby, T.B., Alexander, D.C. (2014). High angular resolution diffusion imaging with stimulated echoes: Compensation and correction in experiment design and analysis. NMR IN BIOMEDICINE, 27 (8), 918-925. doi:10.1002/nbm.3137
Mac Aodha, O., Campbell, N.D.F., Kautz, J., Brostow, G.J. (2014). Hierarchical Subquery Evaluation for Active Learning on a Graph.
Mac Aodha, O., Stathopoulos, V., Terry, M., Jones, K.E., Brostow, G.J., Girolami, M. (2014). Putting the Scientist in the Loop - Accelerating Scientific Progress with Interactive Machine Learning.
Malone, E., dos Santos, G.S., Holder, D., Arridge, S. (2014). Multifrequency Electrical Impedance Tomography Using Spectral Constraints.
Malone, E., Jehl, M., Arridge, S., Betcke, T., Holder, D. (2014). Stroke type differentiation using spectrally constrained multifrequency EIT: evaluation of feasibility in a realistic head model. Physiological measurement, 35 (6), 1051-.
Manber, R., Atkinson, D., Barnes, A., Hutton, B., O'Meara, C., Ourselin, S., ...Thielemans, K. (2014). Validation of a PET-derived Respiratory Signal by Comparison with an MRI Pencil-Beam Navigator Signal in Simultaneous PET/MR.
Manber, R., Thielemans, K., Hutton, B., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2014). Initial evaluation of a practical PET respiratory motion correction method in clinical simultaneous PET/MRI.
Markiewicz, P.J., Thielemans, K., Ehrhardt, M.J., Jiao, J., Burgos, N., Atkinson, D., ...Ourselin, S. (2014). High throughput CUDA implementation of accurate geometric modelling for iterative reconstruction of PET data.
Markiewicz, P., Thielemans, K., Burgos, N., Manber, R., Jiao, J., Barnes, A., ...Ourselin, S. (2014). Image reconstruction of mMR PET data using the open source software STIR.
Martin, J., McClelland, J., Yip, C., Thomas, C., Hartill, C., Ahmad, S., ...Hawkes, D. (2014). Fully-deformable patient motion models from cone-beam CT for radiotherapy applications. XVII INTERNATIONAL CONFERENCE ON THE USE OF COMPUTERS IN RADIATION THERAPY (ICCR 2013), 489 doi:10.1088/1742-6596/489/1/012034
McClelland, J.R., Champion, B.A.S., Hawkes, D.J. (2014). Combining Image Registration, Respiratory Motion Modelling, and Motion Compensated Image Reconstruction.
Menys, A., Butt, S., Emmanuel, A., Zarate, N., Atkinson, D., Plumb, A., Taylor, S.A. (2014). Quantitative assessment of global small bowel motility in Chronic Intestinal Pseudo-Obstruction and controls: A Preliminary Study.
Menys, A., Hamy, V., Hoad, C., Makanyanga, J., Odille, F., Gowland, P., ...Atkinson, D. (2014). Dual Registration of Abdominal Motion in free-breathing data sets acquired using dynamic MRI.
Menys, A., Hamy, V., Makanyanga, J., Hoad, C., Gowland, P., Odille, F., ...Atkinson, D. (2014). Dual registration of abdominal motion for motility assessment in free-breathing data sets acquired using dynamic MRI. Physics in Medicine and Biology, 59 4603-4619. doi:10.1088/0031-9155/59/16/4603
Menys, A., Makanyanga, J., Pendse, D., Atkinson, D., Taylor, S. (2014). Changes in Global Small Bowel Motility in Response to Inflammation in Crohn’s Disease.
Menys, A., Plumb, A., Atkinson, D., Taylor, S.A. (2014). The challenge of segmental small bowel motility quantitation using Magnetic Resonance Enterography. British Journal of Radiology, 87 20140330.-. doi:10.1259/bjr.20140330
Mertzanidou, T., Hipwell, J., Dalmis, M., Platel, B., Van Der Laak, J., Mann, R., ...Hawkes, D. (2014). Towards spatial correspondence between specimen and in-vivo breast imaging.
Mertzanidou, T., Hipwell, J., Johnsen, S., Han, L., Eiben, B., Taylor, Z., ...Bick, U. (2014). MRI to X-ray mammography intensity-based registration with simultaneous optimisation of pose and biomechanical transformation parameters.. MEDICAL IMAGE ANALYSIS, 18 (4), 674-683. doi:10.1016/j.media.2014.03.003
Mozumder, M., Tarvainen, T., Kaipio, J.P., Arridge, S.R., Kolehmainen, V. (2014). Compensation of modeling errors due to unknown domain boundary in diffuse optical tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 31 (8), 1847-1855. doi:10.1364/JOSAA.31.001847
Nagy, Z., Ganepola, T., Sereno, M., Weiskopf, N., Alexander, D. (2014). Combining HARDI datasets with more than one b-value improves diffusion MRI-based cortical parcellation.
Nedjati-Gilani, G.L., Hall, M.G., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Learning microstructure parameters from diffusion-weighted MRI using random forests.
Nedjati-Gilani, G.L., Schneider, T., Hall, M.G., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2014). Machine learning based compartment models with permeability for white matter microstructure imaging.
Newell, A.J., Griffin, L.D. (2014). Writer identification using oriented Basic Image Features and the Delta encoding. PATTERN RECOGNITION, 47 (6), 2255-2265. doi:10.1016/j.patcog.2013.11.029
Odille, F., Escanye, J., Atkinson, D., Bonnemains, L., Felblinger, J. (2014). Nonrigid registration improves MRI T2 quantification in heart transplant patient follow-up. Journal of Magnetic Resonance Imaging, doi:10.1002/jmri.24741
Oxtoby, N.P., Young, A.L., Daga, P., Cash, D.M., Ourselin, S., Schott, J.M., ...Alexander, D.C. (2014). Learning imaging biomarker trajectories from noisy Alzheimer's disease data using a Bayesian multilevel model.
Panagiotaki, E., Chan, R.W., Dikaios, N., Ahmed, H., Atkinson, D., Punwani, S., ...Alexander, D.C. (2014). Microstructural characterisation of normal and malignant human prostate tissue with VERDICT-MRI.
Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Pedley, R.B., Lythgoe, M.F., Alexander, D.C. (2014). In vivo characterisation of tumour microstructure with VERDICT MRI.
Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Rajkumarc, V., Pedley, R., ...Alexander, D.C. (2014). Non-invasive quantification of solid tumor microstructure using VERDICT MRI. Cancer Research, doi:10.1158/0008-5472.CAN-13-2511
Pendse, D., Makanyanga, J., Plumb, A., Atkinson, D., Taylor, S. (2014). Diffusion MRI in Crohn's disease: Comparison with fecal calprotectin and MR-Enterography.
Protonotarios, E.D., Baum, B., Johnston, A., Hunter, G.L., Griffin, L.D. (2014). An absolute interval scale of order for point patterns.. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 11 (99), doi:10.1098/rsif.2014.0342
Protonotarios, E., Johnston, A., Griffin, L.D. (2014). An absolute interval scale for approximate order of 2D point patterns.
P.r.o.v.e.r.b.i.o., S.i.o.w., Panagiotaki, E., W.a.l.k.e.r.-.S.a.m.u.e.l., L.y.t.h.g.o.e., Gibson, A., Alexander, D.C. (2014). Mathematical models of colorectal tumour microstructure informed by oscillating gradients diffusion MRI.
Pulkkinen, A., Cox, B.T., Arridge, S.R., Kaipio, J.P., Tarvainen, T. (2014). A Bayesian approach to spectral quantitative photoacoustic tomography. INVERSE PROBLEMS, 30 (6), doi:10.1088/0266-5611/30/6/065012
Pulkkinen, A., Kolehmainen, V., Kaipio, J.P., Cox, B.T., Arridge, S.R., Tarvainen, T. (2014). APPROXIMATE MARGINALIZATION OF UNKNOWN SCATTERING IN QUANTITATIVE PHOTOACOUSTIC TOMOGRAPHY. INVERSE PROBLEMS AND IMAGING, 8 (3), 811-829. doi:10.3934/ipi.2014.8.811
Richardson, S., Siow, B., Panagiotaki, E., Schneider, T., Lythgoe, M.F., Alexander, D.C. (2014). Viable and fixed white matter: diffusion magnetic resonance comparisons and contrasts at physiological temperature.. MAGNETIC RESONANCE IN MEDICINE, 72 (4), 1151-1161. doi:10.1002/mrm.25012
Rogers, T.W., Ollier, J., Morton, E.J., Griffin, L.D. (2014). Reduction of Wobble Artefacts in Images From Mobile Transmission X-ray Vehicle Scanners.
Roth, H.R., Hampshire, T.E., Helbren, E., Hu, M., Vega, R., Halligan, S., Hawkes, D.J. (2014). Computer-assisted polyp matching between optical colonoscopy and CT colonography: a phantom study. MEDICAL IMAGING 2014: IMAGE-GUIDED PROCEDURES, ROBOTIC INTERVENTIONS, AND MODELING, 9036 doi:10.1117/12.2042860
Sahraian, M.A., Wottschel, V., Calabrese, M., Eshaghi, A., Alexander, D., Ciccarelli, O. (2014). Distinction between neuromyelitis optica and multiple sclerosis using multi-voxel pattern classification.
Sari, H., Erlandsson, K., Barnes, A., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Modelling the impact of injection time on the bolus shapes in PET-MRI AIF conversion.
Sari, H., Erlandsson, K., Barnes, A., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2014). Exploiting an MRI Derived Arterial Input Function to Improve the PET Simultaneous Estimation Method: Validation of Assumptions.
Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Incorporation of MRI-AIF information for improved kinetic modelling of dynamic PET data..
Schweiger, M., Arridge, S. (2014). The Toast plus plus software suite for forward and inverse modeling in optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 19 (4), doi:10.1117/1.JBO.19.4.040801
Stoeck, C., Kalinowska, A., von Deuster, C., Harmer, J., Chan, R., Niemann, M., ...Mekkaoui, C. (2014). Dual-phase cardiac diffusion tensor imaging with strain correction. PLoS One, 9 (9), e107159-. doi:10.1371/journal.pone.0107159
Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M., Zhang, H. (2014). NODDI with dispersion anisotropy.
Tariq, M., Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M., Zhang, H. (2014). In vivo estimation of dispersion anisotropy of neurites using diffusion MRI. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014. (pp. 241-248). .
Tariq, M., Schneider, T., Alexander, D., Wheeler-Kingshott, C., Zhang, H. (2014). NODDI with dispersion anisotropy.
Totz, J., Thompson, S., Stoyanov, D., Gurusamy, K., Davidson, B., Hawkes, D., Clarkson, M. (2014). Fast semi-dense surface reconstruction from stereoscopic video in laparoscopic surgery..
Tremoulheac, B.R., Atkinson,, D., Arridge,, S. (2014). Low-rank and (x-f)-space sparsity via fast composite splitting for accelerated dynamic MR imaging.
Tremoulheac, B.R., Dikaios,, N., Atkinson,, D., Arridge, S. (2014). Dynamic MR image reconstruction–separation from undersampled (k,t)-space via low-rank plus sparse prior. IEEE Transactions on Medical Imaging, 33 (8), 1689-1701. doi:10.1109/TMI.2014.2321190
Usman, M., Atkinson, D., Greil, G., Schaeffter, T., Prieto, C. (2014). Motion corrected sparse SENSE for highly accelerated multi slice cardiac CINE.
Usman, M., Atkinson, D., Kolbitsch, C., Schaeffter, T., Prieto, C. (2014). Manifold learning based ECG-free free breathing cardiac CINE MRI. Journal of Magnetic Resonance Imaging, 41 (6), 1521-1527. doi:10.1002/jmri.24731
Usman, M., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Manifold Learning based ECG-free free breathing cardiac MRI for highly accelerated CINE.
Usman, M., Baumgartner, C., King, A., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Achieving 3D CINE from free breathing multi-slice 2D acquisitions via Simultaneous Groupwise Manifold Alignment.
Usman, M., Vaillant, G., Atkinson, D., Schaeffter, T., Prieto, C. (2014). Compressive Manifold Learning: Estimating One-Dimensional Respiratory Motion Directly from Undersampled k-Space Data. MAGNETIC RESONANCE IN MEDICINE, 72 (4), 1130-1140. doi:10.1002/mrm.25010
Vendhan, K., Atkinson, D., Sen, D., Fishe, C., Ioannou, Y., Bassett, P., Hall-Craggs, M. (2014). A NOVEL METHOD FOR QUANTIFYING INFLAMMATION OF SACROILIITIS IN JUVENILE ARTHRITIS.
Wang, P., Arridge, S.R., Jiang, M. (2014). Radiative transfer equation for media with spatially varying refractive index. PHYSICAL REVIEW A, 90 (2), doi:10.1103/PhysRevA.90.023803
Wottschel, V., Alexander, D.C., Chard, D.T., Ciccarelli, O., Miller, D.H. (2014). Prediction of time between CIS onset and clinical conversion to MS using Random Forests.
Wottschel, V., Alexander, D.C., Kwok, P.P., Chard, D.T., Thompson, A.J., Miller, D.H., Ciccarelli, O. (2014). Predicting outcome in clinically isolated syndrome using machine learning. NeuroImage,
Young, A.L., Oxtoby, N.P., Daga, P., Cash, D.M., Fox, N.C., Ourselin, S., ...Alzheimer’s Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2014). A data-driven model of biomarker changes in sporadic Alzheimer's disease.. BRAIN, 137 2564-2577. doi:10.1093/brain/awu176

2013

Alexander, D.C., Dyrby, T.B. (2013). Diffusion imaging with stimulated echoes: signal models and experiment design. ArXiv,
Allan, M., Ourselin, S., Thompson, S., Hawkes, D.J., Kelly, J., Stoyanov, D. (2013). Toward detection and localization of instruments in minimally invasive surgery.. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 60 (4), 1050-1058. doi:10.1109/TBME.2012.2229278
Allan, M., Ourselin, S., Thompson, S., Hawkes, D.J., Kelly, J., Stoyanov, D. (2013). Toward Detection and Localization of Instruments in Minimally Invasive Surgery.. IEEE Trans. Biomed. Engineering, 60 1050-1058. doi:10.1109/TBME.2012.2229278
Arridge, S.R., Egger, H., Schlottbom, M. (2013). Preconditioning of complex symmetric linear systems with applications in optical tomography. APPLIED NUMERICAL MATHEMATICS, 74 35-48. doi:10.1016/j.apnum.2013.06.008
Assaf, Y., Alexander, D.C., Jones, D.K., Bizzi, A., Behrens, T.E.J., Clark, C.A., ...Knoesche, T.R. (2013). The CONNECT project: Combining macro- and micro-structure. NEUROIMAGE, 80 273-282. doi:10.1016/j.neuroimage.2013.05.055
Bakshi, B., Sutcliffe, A., Akindolie, M. (2013). How reliably can paediatric professionals identify pale stool from cholestatic newborns? (vol 97, pg F385, 2012). ARCHIVES OF DISEASE IN CHILDHOOD-FETAL AND NEONATAL EDITION, 98 (2), F180.
Boone, D.J., Halligan, S., Roth, H.R., Hampshire, T.E., Helbren, E., Slabaugh, G.G., ...Punwani, S. (2013). CT colonography: external clinical validation of an algorithm for computer-assisted prone and supine registration.. RADIOLOGY, 268 (3), 752-760. doi:10.1148/radiol.13122083
Bourne, R.M., Panagiotaki, E., Bongers, A., Sved, P., Watson, G., Alexander, D.C. (2013). Information theoretic ranking of four models of diffusion attenuation in fresh and fixed prostate tissue ex vivo. Magnetic Resonance in Medicine, doi:10.1002/mrm.25032
Brock, K., Dong, L., Hawkes, D. (2013). TU‐G‐WAB‐01: Advanced Applications in Deformable Registration. Medical Physics, 40 (6), 455-456. doi:10.1118/1.4815460
Burgos, N., Cardoso, J.M., Modat, M., Pedemonte, S., Dickson, J., Barnes, A., ...Hutton, B.F. (2013). Attenuation Correction Synthesis for Hybrid PET-MR Scanners.
Cade, S.C., Arridge, S., Evans, M.J., Hutton, B.F. (2013). Use of measured scatter data for the attenuation correction of single photon emission tomography without transmission scanning. MEDICAL PHYSICS, 40 (8), doi:10.1118/1.4812686
Campanella, M., Molinari, E., Baraldi, P., Nocetti, L., Porro, C.A., Alexander, D.C. (2013). An algorithm to estimate anatomical connectivity between brain regions using diffusion MRI. MAGNETIC RESONANCE IMAGING, 31 (3), 353-358. doi:10.1016/j.mri.2012.10.001
Campanella, M., Molinari, E., Baraldi, P., Nocetti, L., Porro, C.A., Alexander, D.C. (2013). An algorithm to estimate anatomical connectivity between brain regions using diffusion MRI. Magnetic Resonance Imaging, 31 (3), 353-358. doi:10.1016/j.mri.2012.10.001
Campbell-Washburn, A.E., Atkinson, D., Josephs, O., Lythgoe, M.F., Ordidge, R.J., Thomas, D.L. (2013). Correction of RF spike noise in MR images using Robust Principal Component Analysis.
Chamorro-Servent, J., Abascal, J.F.P.J., Aguirre, J., Arridge, S., Correia, T., Ripoll, J., ...Vaquero, J.J. (2013). Use of Split Bregman denoising for iterative reconstruction in fluorescence diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 18 (7), doi:10.1117/1.JBO.18.7.076016
Chan, R.W., Kozerke, S., Giese, D., Harmer, J., Stoeck, C.T., von Deuster, C., ...Atkinson, D. (2013). Characterization and correction of eddy-current artifacts in unipolar and bipolar diffusion sequences using a field-monitoring approach: Application to renal diffusion tensor imaging (DTI).
Correia, T., Ducros, N., D'Andrea, C., Schweiger, M., Arridge, S. (2013). Quantitative fluorescence diffuse optical tomography in the presence of heterogeneities. OPTICS LETTERS, 38 (11), 1903-1905. doi:10.1364/OL.38.001903
Correia, T., Rudge, T., Arridge, S. (2013). Efficient image reconstruction in fluorescence diffuse opitcal tomography (fDOT) using data and solution compression.
Correia, T., Rudge, T., Koch, M., Ntziachristos, V., Arridge, S. (2013). Wavelet-based data and solution compression for efficient image reconstruction in fluorescence diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 18 (8), doi:10.1117/1.JBO.18.8.086008
Dikaios, N., Alazeez, M.A., Emberton, M., Fujiwara, T., Atkinson, D., Punwani, S. (2013). Derivation and comparison of site specific peripheral and transition zone quantitative DCE MRI logistic regression models for prostate cancer detection: does cancer location matter?.
Dikaios, N., Atkinson, D. (2013). Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhancement MRI.
Dikaios, N., Hamy, V., Punwani, S., Atkinson, D. (2013). Noise estimation for averaged DW MR images.
Dikaios, N., Punwani, S., Hamy, V., Purpura, P., Rice, S., Forster, M., ...Atkinson, D. (2013). Noise estimation from averaged diffusion weighted images: can unbiased quantitative decay parameters assist cancer evaluation?. Magnetic Resonance in Medicine, 71 (6), 2105-2117. doi:10.1002/mrm.24877
Dikaios, N., Tremoulheac, B., Menys, A., Hamy, V., Arridge, S., Atkinson, D. (2013). Joint reconstruction of low-rank and sparse components from undersampled (k, t)-space small bowel data.
Drobnjak, I., Cruz, G., Alexander, D.C. (2013). Optimising oscillating waveform-shape for pore size sensitivity in diffusion-weighted MR. MICROPOROUS AND MESOPOROUS MATERIALS, 178 11-14. doi:10.1016/j.micromeso.2013.03.004
Drobnjak, I., Cruz, G., Alexander, D.C. (2014). Corrigendum to "Optimising oscillating waveform-shape for pore size sensitivity in diffusion-weighted MR" [Micropor. Mesopor. Mater. 178 (2013) 11-14] (DOI:10.1016/j.micromeso.2013.03.004). MICROPOROUS AND MESOPOROUS MATERIALS, 196 360. doi:10.1016/j.micromeso.2014.03.001
Ducros, N., Bassi, A., Valentini, G., Canti, G., Arridge, S., D'Andrea, C. (2013). Fluorescence Molecular Tomography on animal model by means of multiple views structured light illumination.
Ducros, N., Bassi, A., Valentini, G., Canti, G., Arridge, S., D'Andrea, C. (2013). Fluorescence molecular tomography of an animal model using structured light rotating view acquisition. JOURNAL OF BIOMEDICAL OPTICS, 18 (2), doi:10.1117/1.JBO.18.2.020503
Dyrby, T.B., Søgaard, L.V., Ptito, M., Hall, M.G., Alexander, D.C. (2013). Contrast and stability of the axon diameter index from microstructure imaging with diffusion MRI. MAGNETIC RESONANCE IN MEDICINE, 70 (3), 711-721. doi:10.1002/mrm.24501
Eiben, B., Han, L., Hipwell, J., Mertzanidou, T., Kabus, S., Buelow, T., ...Keshtgar, M. (2013). Biomechanically guided prone-to-supine image registration of breast MRI using an estimated reference state.
Farina, A., Pifferi, A., Torricelli, A., Bargigia, I., Spinelli, L., Cubeddu, R., ...Fugger, O. (2013). Multi-laboratory investigation of the optical properties of the human head.
Ferizi, U., Schneider, T., Panagiotaki, E., Nedjati-Gilani, G., Zhang, H., Wheeler-Kingshott, C., Alexander, D. (2013). RANKING DIFFUSION-MRI MODELS WITH IN-VIVO HUMAN BRAIN DATA.
Ferizi, U., Schneider, T., Panagiotaki, E., Nedjati-Gilani, G., Zhang, H., Wheeler-Kingshott, C., Alexander, D. (2013). Using in-vivo human brain data to select diffusion MRI compartment models.
Ferizi, U., Schneider, T., Panagiotaki, E., Nedjati-Gilani, G., Zhang, H., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2013). A ranking of diffusion MRI compartment models with in vivo human brain data. Magnetic Resonance in Medicine, doi:10.1002/mrm.25080
Ferizi, U., Schneider, T., Tariq, M., Wheeler-Kingshott, C.A.M., Zhang, H., Alexander, D. (2013). The Importance of Being Dispersed: a Statistical Ranking of Diffusion MRI Models for Fibre Dispersion using In Vivo Brain Data. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013. (pp. 74-81). .
Garvey, C.C., Cahill, N.D., Melbourne, A., Tanner, C., Ourselin, S., Hawkes, D.J. (2013). NONRIGID IMAGE REGISTRATION WITH TWO-SIDED SPACE-FRACTIONAL PARTIAL DIFFERENTIAL EQUATIONS. 2013 20TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP 2013), 747-751.
Griffin, L.D. (2013). Basic Colors and Image Features: The Case for an Analogy. In Handbook of Experimental Phenomenology: Visual Perception of Shape, Space and Appearance. (pp. 449-475). .
Griffin, L.D. (2013). Colour vision and local spatial vision: similarities and differences. In Albertazzi, L. (Ed.), Handbook of Experimental Phenomenology. (pp. 449-476). John Wiley & Sons.
Griffin, L.D., Wahab, M.H., Newell, A.J. (2013). Distributional Learning of Appearance. PLoS ONE, 8 (2), e58074-. doi:10.1371/journal.pone.0058074
Grussu, F., Schneider, T., Kearney, H., Zhang, H., Miller, D.H., Ciccarelli, O., ...Wheeler-Kingshott, C.A.M. (2013). Towards spinal cord microstructure mapping with the neurite orientation dispersion and density imaging.
Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2013). In vivo estimation of neuronal orientation dispersion and density of the human spinal cord.
Hampshire, T., Helbren, E., Plumb, A., Roth, H., Halligan, S., Hawkes, D. (2013). Spatial Correspondence between Prone and Supine CT Colonography Images: Creating a Reference Standard.
Hampshire, T., Roth, H.R., Helbren, E., Plumb, A., Boone, D., Slabaugh, G., ...Hawkes, D.J. (2013). Endoluminal surface registration for CT colonography using haustral fold matching. MEDICAL IMAGE ANALYSIS, 17 (8), 946-958. doi:10.1016/j.media.2013.04.006
Hamy, V., Dikaios, N., Punwani, S., Melbourne, A., Latifoltojar, A., Makanyanga, J., ...Taylor, S. (2013). Respiratory motion correction in dynamic MRI using Robust Data Decomposition Registration – Application to DCE-MRI. Medical Image Analysis, 18 (2), 301-313. doi:10.1016/j.media.2013.10.016
Hamy, V., Menys, A., Helbren, E., Odille, F., Punwani, S., Taylor, S., Atkinson, D. (2013). Respiratory motion correction in dynamic-MRI: Application to small bowel motility quantification during free breathing.
Hamy, V., Punwani, S., Makanyanga, J., Taylor, S., Atkinson, D. (2013). Motion correction in small bowel DCE-MRI using Robust Data Decomposition Registration.
Harmer, J., Pushparajah, K., Toussaint, N., Stoeck, C.T., Chan, R., Atkinson, D., ...Kozerke, S. (2013). In vivo myofibre architecture in the systemic right ventricle. European Heart Journal, 34 (47), 3640. doi:10.1093/eurheartj/eht442
Harmer, J., Stoeck, C.T., Chan, R.W., Toussaint, N., von Deuster, C., Atkinson, D., Kozerke, S. (2013). In-vivo high resolution Diffusion Tensor Imaging of the human heart at 3T: Fat suppression in the presence of B0 field inhomogeneities.
Harmer, J., Toussaint, N., Pushparajah, K., Stoeck, C.T., Chan, R.W., Razavi, R., ...Kozerke, S. (2013). In-vivo Diffusion Tensor Imaging of the systemic right ventricle at 3T.
Hutton, B.F., Thomas, B.A., Erlandsson, K., Bousse, A., Reilhac-Laborde, A., Kazantsev, D., ...Ourselin, S. (2013). What approach to brain partial volume correction is best for PET/MRI?. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 702 29-33. doi:10.1016/j.nima.2012.07.059
Ianus, A., Siow, B., Drobnjak, I., Zhang, H., Alexander, D.C. (2013). Gaussian Phase Distribution Approximations forOscillating Gradient Spin Echo Diffusion MRI. Journal of Magnetic Resonance, 227 25-34. doi:10.1016/j.jmr.2012.11.021
Kaden, E., Alexander, D.C. (2013). Can T2-spectroscopy resolve submicrometer axon diameters?.
Kaden, E., Alexander, D.C. (2013). Can T2-spectroscopy resolve submicrometer axon diameters?. Information processing in medical imaging : proceedings of the ... conference, 23 607-618.
Kearney, H., Grussu, F., Schneider, T., Zhang, H., Alexander, D.C., Wheeler-Kingshott, C.A.M., ...Miller, D.H. (2013). Neurite orientation dispersion and density imaging in the multiple sclerosis spinal cord..
Kowalik, G., Steeden, J., Atkinson, D., Taylor, A., Muthurangu, V. (2013). Implementation of a heterogeneous image reconstruction system for clinical Magnetic Resonance.
Kunz, N., Zhang, H., Assaf, Y., Lazeyras, F., Alexander, D., Hüppi, P.S. (2013). Brain Microstructure assessed by CHARMED and NODDI in the newborn.
Lyksborg, M., Dyrby, T.B., Sorensen, P.S., Blinkenberg, M., Siebner, H.R., Alexander, D., ...Zhang, H. (2013). TRACT-ORIENTED STATISTICAL GROUP COMPARISON OF DIFFUSION IN SHEET-LIKE WHITE MATTER.
Mac Aodha, O., Brostow, G.J. (2013). Revisiting Example Dependent Cost-Sensitive Learning with Decision Trees.
Martin, J., McClelland, J., Yip, C., Thomas, C., Hartill, C., Ahmad, S., ...Hawkes, D. (2013). Building motion models of lung tumours from cone-beam CT for radiotherapy applications.. PHYSICS IN MEDICINE AND BIOLOGY, 58 (6), 1809-1822. doi:10.1088/0031-9155/58/6/1809
McClelland, J.R., Hawkes, D.J., Schaeffter, T., King, A.P. (2013). Respiratory motion models: a review.. MEDICAL IMAGE ANALYSIS, 17 (1), 19-42. doi:10.1016/j.media.2012.09.005
Menys, A., Helbren, E., Makanyanga, J., Emmanual, A., Forbes, A., Windsor, A., ...Taylor, S.A. (2013). Pre-obstructive changes in small bowel motility in stricturing Crohn's disease appear reversible on investigation with MRE..
Menys, A., Helbren, E., Makanyanga, J., Emmanuel, A., Forbes, A., Windsor, A., ...Taylor, S.A. (2013). Small bowel strictures in Crohn’s disease: a quantitative investigation of intestinal motility using MR enterography. Neurogastroenterology and Motility, 25 (12), 967-e775-. doi:10.1111/nmo.12229
Menys, A., Taylor, S.A., Emmanuel, A., Ahmed, A., Plumb, A., Odille, F., ...Atkinson, D. (2013). A novel technique for global small bowel motility assessment using dynamic MRI.
Menys, A., Taylor, S.A., Emmanuel, A., Ahmed, A., Plumb, A., Odille, F., ...Atkinson, D. (2013). Global small bowel motility: Assessment with dynamic MR imaging. Radiology, 269 (2), 443-450. doi:10.1148/radiol.13130151
Miquel, M.E., Blackall, J.M., Uribe, S., Hawkes, D.J., Schaeffter, T. (2013). Patient-specific respiratory models using dynamic 3D MRI: Preliminary volunteer results. PHYSICA MEDICA-EUROPEAN JOURNAL OF MEDICAL PHYSICS, 29 (2), 214-220. doi:10.1016/j.ejmp.2012.03.003
Mozumder, M., Tarvainen, T., Arridge, S.R., Kaipio, J., Kolehmainen, V. (2013). Compensation of optode sensitivity and position errors in diffuse optical tomography using the approximation error approach. BIOMEDICAL OPTICS EXPRESS, 4 (10), 2015-2031. doi:10.1364/BOE.4.002015
Nagy, Z., Alexander, D.C., Thomas, D.L., Weiskopf, N., Sereno, M.I. (2013). Using High Angular Resolution Diffusion Imaging Data to Discriminate Cortical Regions. PLOS ONE, 8 (5), doi:10.1371/journal.pone.0063842
Nedjati-Gilani, G.L., Schneider, T., Siow, B., Tachrount, M., Davies, A.L., Smith, K.J., ...Alexander, D.C. (2013). Pinning down specificity of biomarkers to axon and myelin damage: preliminary results.
Panagiotaki, E., Alexander, D.C., Bourne, R.M. (2013). Comparison of single and multi-compartment models of diffusion in fixed prostate tissue.
Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, P., Pedley, R., Lythgow, M.F., Alexander, D.C. (2013). In vivo characterisation of colorectal tumour microstructure with DW-MRI.
Panagiotaki, E., Walker-Samuel, S., Siow, B., Johnson, S.P., Pedley, R.B., Lythgoe, M.F., Alexander, D.C. (2013). In vivo characterisation of tumour microstructure with VERDICT MRI.
Richardson, S., A.l.e.x.a.n.d.e.r., Siow, B.M.S., Lythgoe, M.F., Schneider, T., P.a.n.a.g.i.o.t.a.k.i. (2013). Viable and Fixed White Matter: DTI and Microstructural Comparisons at Physiological Temperature..
Roth, H., McClelland, J., Hampshire, T., Boone, D., Hu, Y., Modat, M., ...Hawkes, D.J. (2013). Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension.. In Yoshida, H., Warfield, S.K., Vannier, M.W. (Eds.), Abdominal Imaging. Computation and Clinical Applications. (pp. 29-38). Springer.
Roth, H.R., Helbren, E., Hampshire, T.E., Pickhardt, P.J., Halligan, S., Hawkes, D.J. (2013). Registration of Temporally Separated CT Colonography Cases.
Roth, H.R., McClelland, J.R., Modat, M., Hampshire, T.E., Boone, D.J., Helbren, E., ...Halligan, S. (2013). CT colonography: Inverse-consistent symmetric registration of prone and supine inner colon surfaces.
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Alexander, D.C., Dyrby, T.B. (2012). Compensation for bias from unwanted gradient contributions in STEAM diffusion MRI.
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Dikaios, N., Fujiwara, T., Abd Alazeez, M., Atkinson, D., Punwani, S. (2012). Diagnostic modelling of multi-parametric MRI as a radiological tool to predict transition zone prostate cancer.
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Garcia Cifuentes, C., Sturzel, M., Jurie, F., Brostow, G.J. (2012). Motion Models That Only Work Sometimes.
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Han, L., Hipwell, J.H., Tanner, C., Taylor, Z., Mertzanidou, T., Cardoso, J., ...Hawkes, D.J. (2012). Development of patient-specific biomechanical models for predicting large breast deformation.. PHYSICS IN MEDICINE AND BIOLOGY, 57 (2), 455-472. doi:10.1088/0031-9155/57/2/455
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Hipwell, J.H., Griffin, L.D., Whelehan, P.J., Song, W., Zhang, X., Lesniak, J.M., ...Hawkes, D.J. (2012). Characterizing breast phenotype with a novel measure of fibroglandular structure.
Huang, J., Alexander, D. (2012). Probabilistic event cascades for Alzheimer's disease. Advances in Neural Information Processing Systems, 4 3095-3103.
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Mac Aodha, O., Campbell, N.D.F., Nair, A., Brostow, G.J. (2012). Patch Based Synthesis for Single Depth Image Super-Resolution.
Mac Aodha, O., Humayun, A., Pollefeys, M., Brostow, G.J. (2012). Learning a Confidence Measure for Optical Flow. IEEE Transactions on Pattern Analysis and Machine Intelligence, 35 (5), 1107-1120. doi:10.1109/TPAMI.2012.171
Mallik, C., Bandula, S., Rice, S., Atkinson, D., Taylor, S., Moon, J., Punwani, S. (2012). Optimisation of the bolus and infusion protocol for equilibrium magnetic resonance imaging.
Mat Baki, M., Birchall, M., Menys, A., Beale, T., Atkinson, D., Stevens, N., ...Punwani, S. (2012). Quantitative measure of vocal fold motion — a feasibility study.
McClelland, J., Suh, Y., Ahmad, S., Hawkes, D. (2012). Study of Deformable Registration Based 4DCT Ventilation Imaging Methods.
Melbourne, A., Cahill, N., Tanner, C., Modat, M., Hawkes, D.J., Ourselin, S. (2012). Using fractional gradient information in non-rigid image registration: Application to breast MRI. MEDICAL IMAGING 2012: IMAGE PROCESSING, 8314 doi:10.1117/12.911173
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Menys, A., Helbren, E., Makanyanga, J., Halligan, S., Atkinson, D., Taylor, S. (2012). Small bowel strictures in Crohn’s Disease: A quantitative investigation of intestinal motility using MR Enterography.
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Mertzanidou, T., Hipwell, J., Cardoso, M.J., Zhang, X., Tanner, C., Ourselin, S., ...Hawkes, D. (2012). MRI to X-ray mammography registration using a volume-preserving affine transformation.. MEDICAL IMAGE ANALYSIS, 16 (5), 966-975. doi:10.1016/j.media.2012.03.001
Mertzanidou, T., Hipwell, J.H., Han, L., Taylor, Z.A., Huisman, H.J., Bick, U., ...Hawkes, D.J. (2012). Intensity-Based MRI to X-ray Mammography Registration with an Integrated Fast Biomechanical Transformation..
Morgan, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2012). A Bayesian framework for modelling the regional variation of white matter microstructure.
Newell, A.J., MORGAN, R.M., Bull, P.A., Griffin, L.D., Graham, G. (2012). Automated texture recognition of quartz sand grains for forensic applications.. Journal of Forensic Sciences,
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Pedemonte, S., Arridge, S., Hutton, B.F., Ourselin, S. (2012). Joint Estimation of the Activity and the Events of Interaction in SPECT Systems.
Pedemonte, S., Cardoso, M.J., Arridge, S.R., Hutton, B.F., Ourselin, S. (2012). Steady-State Model of the Radio-Pharmaceutical Uptake for MR-PET..
Perez-Juste Abascal, J.F., Aguirre, J., Chamorro-Servent, J., Schweiger, M., Arridge, S., Ripoll, J., ...Desco, M. (2012). Influence of absorption and scattering on the quantification of fluorescence diffuse optical tomography using normalized data. JOURNAL OF BIOMEDICAL OPTICS, 17 (3), doi:10.1117/1.JBO.17.3.036013
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Proverbio, A., Siow, B., Lythgoe, M., Gibson, A., Alexander, D. (2012). Multimodality investigation of microstructure: the combination of diffusion NMR and diffuse optical spectroscopy.
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Sardini, A., Stuckey, D.W., McGinty, J., Laine, R., Soloviev, V.Y., Arridge, S.R., ...Hajnal, J.V. (2012). In Vivo Investigation of Calpain Activity by Lifetime Imaging of Genetically Encoded FRET Sensors. BIOPHYSICAL JOURNAL, 102 (3), 159A.
Schneider, T., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2012). Mapping the axon diameter index in the corpus callosum is clinically feasible.
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Thompson, S., Penney, G., Challacombe, B., Hawkes, D., Dasgupta, P. (2012). Design and Evaluation of Image Guidance Systems for RARP.
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Usman, M., Kolbitsch, C., Vaillant, G., Atkinson, D., Schaeffter, T., Batchelor, P.G., Prieto, C. (2012). A frame work for non-rigid motion corrected compressed sensing for highly accelerated MRI.
Vunckx, K., Arridge, S.R., Bousse, A., Kazantsev, D., Pedemonte, S., Ourselin, S., Hutton, B.F. (2012). Unifying Global and Local Statistical Measures for Anatomy-Guided Emission Tomography Reconstruction. 2012 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE RECORD (NSS/MIC), 2161-2165.
Waechter-Stehle, I., Groth, A., Bruijns, T., Brina, O., Ruefenacht, D.A., Kulcsar, Z., ...Weese, J. (2012). Model-based blood flow quantification from DSA: quantitative evaluation on patient data and comparison with TCCD.
Wheeler-Kingshott, C.A.M., Ciccarelli, O., Schneider, T., Alexander, D.C., Cercignani, M. (2012). A new approach to structural integrity assessment based on axial and radial diffusivities. Functional Neurology, 27 (2), 85-90.
Yang, G., Hipwell, J.H., Hawkes, D.J., Arridge, S.R. (2012). A Nonlinear Least Squares Method for Solving the Joint Reconstruction and Registration Problem in Digital Breast Tomosynthesis.
Yang, G., Hipwell, J.H., Tanner, C., Hawkes, D.J., Arridge, S.R. (2012). Joint Registration and Limited-Angle Reconstruction of Digital Breast Tomosynthesis.
Zhang, H., Dyrby, T.B., Alexander, D.C. (2012). Axon diameter mapping in crossing fibers with diffusion MRI.
Zhang, H., Schneider, T., Wheeler-Kingshott, C.A., Alexander, D.C. (2012). NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage, 61 (4), 1000-1016. doi:10.1016/j.neuroimage.2012.03.072
Zhang, H., Schneider, T., Wheeler-Kingshott, C., Alexander, D.C. (2012). NODDI: a practical technique for in vivo neurite orientation dispersion and density imaging of the human brain.
Zhang, H., Schneider, T., wheeler-kingshott, C., Alexander, D.C. (2012). NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain.

2011

Abascal, J.F.P.-.J., Chamorro-Servent, J., Aguirre, J., Arridge, S., Correia, T., Ripoll, J., ...Desco, M. (2011). Fluorescence diffuse optical tomography using the split Bregman method. MEDICAL PHYSICS, 38 (11), 6275-6284. doi:10.1118/1.3656063
Abascal, J.-.F.P.J., Lionheart, W.R.B., Arridge, S.R., Schweiger, M., Atkinson, D., Holder, D.S. (2011). Electrical impedance tomography in anisotropic media with known eigenvectors. Inverse Problems, 27 (6), 065004-. doi:10.1088/0266-5611/27/6/065004
Abascal, J.P.J., Lionheart, W.R.B., Arridge, S.R., Schweiger, M., Atkinson, D., Holder, D.S. (2011). Electrical impedance tomography in anisotropic media with known eigenvectors. Inverse Problems, 27 (6), 065004-. doi:10.1088/0266-5611/27/6/065004
Ahmed, H.U., Hu, Y., Carter, T., Lecornet, E., Freeman, A., Hawkes, D.J., ...Emberton, M. (2011). Characterising Clinically Significant Prostate Cancer using Template Prostate Mapping Biopsy.. Journal of Urology, 186 (2), 458-464. doi:10.1016/j.juro.2011.03.147
Arridge, S.R. (2011). Methods in diffuse optical imaging. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 369 (1955), 4558-4576. doi:10.1098/rsta.2011.0311
Bakshi, B., Sutcliffe, A., Akindolie, M., Vadamalayan, B., John, S., Arkley, C., ...Baker, A. (2011). How reliably can paediatric professionals identify pale stool from cholestatic newborns?. Archives of Disease in Childhood. Fetal and Neonatal Edition, doi:10.1136/adc.2010.209700
Bassi, A., Ducros, N., D'andrea, C., Valentini, G., Arridge, S. (2011). Novel approaches based on structured light for fast Diffuse Optical Tomography.
Brostow, G.J., Hernandez, C., Vogiatzis, G., Stenger, B., Cipolla, R. (2011). Video Normals from Colored Lights. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 33 (10), 2104-2114. doi:10.1109/TPAMI.2011.37
Cade, S.C., Arridge, S., Evans, M.J., Hutton, B.F. (2011). Attenuation map estimation without transmission scanning using measured scatter data. 2011 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE (NSS/MIC), 2657-2663.
Clarke, A., Halley, F., Newell, A.J., Griffin, L., Chantler, M. (2011). Perceptual Similarity: A Texture Challenge. Proceedings of the British Machine Vision Conference, 120.0-120.1.
Clarkson, M.J., Modat, M., Han, L., Ourselin, S., Hawkes, D.J., Alexander, D.C., ...Barrat, D. (2011). The UCL Centre for Medical Image Computing (CMIC): An integrated suite of open source software tools to support imaging research in Neurosciences, Oncology and Cardiovascular Sciences.
Cleary, J.O., Modat, M., Norris, F.C., Price, A.N., Jayakody, S.A., Martinez-Barbera, J.P., ...Scambler, P.J. (2011). Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping.. NEUROIMAGE, 54 (2), 769-778. doi:10.1016/j.neuroimage.2010.07.039
Correia, T., Aguirre, J., Sisniega, A., Chamorro-Servent, J., Abascal, J., Vaquero, J.J., ...Arridge, S. (2011). Split operator method for fluorescence diffuse optical tomography using anisotropic diffusion regularisation with prior anatomical information. BIOMEDICAL OPTICS EXPRESS, 2 (9), 2632-2648.
Cox, B., Tarvainen, T., Arridge, S. (2011). Multiple Illumination Quantitative Photoacoustic Tomography using Transport and Diffusion Models.
Daga, P., Winston, G., Modat, M., Cardoso, M.J., Stretton, J., Symms, M., ...Ourselin, S. (2011). Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients.
Daga, P., Winston, G., Modat, M., Cardoso, M., White, M., Mancini, L., ...Yousry, T. (2011). Improved neuronavigation through integration of intraoperative anatomical and diffusion images in an interventional MRI suite.
Daga, P., Winston, G., Modat, M., White, M., Mancini, L., Cardoso, M., ...Ourselin, S. (2011). Accurate localisation of optic radiation during neurosurgery in an interventional MRI Suite. IEEE Trans Med Imaging, doi:10.1109/TMI.2011.2179668
Deligianni, F., Robinson, E., Sharp, D., Edwards, A.D., Rueckert, D., Alexander, D.C. (2011). Exploiting hierarchy in structural brain networks. 2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 871-874.
Drobnjak, I., Alexander, D.C. (2011). Optimising time-varying gradient orientation for microstructure sensitivity in diffusion-weighted MR.. JOURNAL OF MAGNETIC RESONANCE, 212 (2), 344-354. doi:10.1016/j.jmr.2011.07.017
Drobnjak, I., Zhang, H., Hall, M.G., Alexander, D.C. (2011). The matrix formalism for generalised gradients with time-varying orientation in diffusion NMR.. JOURNAL OF MAGNETIC RESONANCE, 210 (1), 151-157. doi:10.1016/j.jmr.2011.02.022
Ducros, N., Bassi, A., Valentini, G., Schweiger, M., Arridge, S., D'Andrea, C. (2011). Multiple-view fluorescence optical tomography reconstruction using compression of experimental data. OPTICS LETTERS, 36 (8), 1377-1379.
Dyrby, T.B., Baaré, W.F.C., Alexander, D.C., Jelsing, J., Garde, E., Søgaard, L.V. (2011). An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets.. HUMAN BRAIN MAPPING, 32 (4), 544-563. doi:10.1002/hbm.21043
Elisee, J., Bonnet, M., Arridge, S. (2011). Accelerated boundary element method for diffuse optical imaging. OPTICS LETTERS, 36 (20), 4101-4103.
Elisee, J., Gibson, A., Arridge, S. (2011). Diffuse optical cortical mapping using the boundary element method. BIOMEDICAL OPTICS EXPRESS, 2 (3), 568-578.
Eshaghi, A., Patel, S.N., Sarabia, A., Higgins, R.R., Savchenko, A., Stojios, P.J., ...Low, D.E. (2011). Multidrug-Resistant Pandemic (H1N1) 2009 Infection in Immunocompetent Child. EMERGING INFECTIOUS DISEASES, 17 (8), 1472-1474. doi:10.3201/eid1708.102004
Fonteijn, H.M., Clarkson, M.J., Modat, M., Barnes, J., Lehmann, M., Ourselin, S., ...Alexander, D.C. (2011). An event-based disease progression model and its application to familial Alzheimer's disease.
Griffin, L., Wahab, M. (2011). Similar things look similar. PERCEPTION, 40 (1), 110-111.
Hampshire, T., Roth, H., Hu, M., Boone, D., Slabaugh, G., Punwani, S., ...Hawkes, D. (2011). Automatic prone to supine haustral fold matching in CT colonography using a Markov random field model.. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, 508-515.
Hamy, V., Atkinson, D., Walker-Samuel, S., Punwani, S. (2011). Comparison of least squares and maximum likelihood for apparent diffusion coefficient estimation in prostate diffusion-weighted MRI (DW-MRI).
Hamy, V., Walker-Samuel, S., Punwani, S., Atkinson, D. (2011). Comparison of least squares and maximum likelihood for apparent diffusion coefficient estimation in prostate DW-MRI.
Han, L., HIPWELL, J., Mertzanidou, T., Carter, T., Modat, M., Ourselin, S., Hawkes, D. (2011). A HYBRID FEM-BASED METHOD FOR ALIGNING PRONE AND SUPINE IMAGES FOR IMAGE GUIDED BREAST SURGERY.
Humayun, A., Mac Aodha, O., Brostow, G.J. (2011). Learning to Find Occlusion Regions.
Hu, Y., Carter, T.J., Ahmed, H.U., Emberton, M., Allen, C., Hawkes, D.J., Barratt, D.C. (2011). Modelling prostate motion for data fusion during image-guided interventions.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 30 (11), 1887-1900. doi:10.1109/TMI.2011.2158235
Jafar, Y., HIPWELL, J., Tanner, C., Melbourne, A., Hawkes, D. (2011). DISCRETISATION OF 3D DEFORMATION FIELDS: IMPLICATIONS FOR ESTABLISHING CORRESPONDENCE BETWEEN 2D X-RAY MAMMOGRAPHIC PROJECTIONS.
Johnsen, S.F., Clark, C., Atkinson, D. (2011). Registration of low-SNR high-resolution diffusion-weighted images.
Kazantsev, D., Bousse, A., Pedemonte, S., Arridge, S.R., Hutton, B.F., Ourselin, S. (2011). Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction. 2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 1158-1161.
Kolehmainen, V., Tarvainen, T., Arridge, S.R., Kaipio, J.P. (2011). Marginalization of uninteresting parameters in inverse problems – application to diffuse opticaltomography. International Journal for Uncertainty Quantification, 1 (1), 1-17.
Kowalik, G., Steeden, J.A., ATKINSON, D., Muthurangu, V. (2011). A networked GPU reconstructor within the clinical workflow for rapid fat quantification..
Kowalik, G., Steeden, J.A., Pandya, B., Atkinson, D., Taylor, A.M., Muthurangu, V. (2011). A heterogeneous image reconstruction system for clinical Magnetic Resonance.
Kunz, N., Zhang, H., O'brien, K.R., Assaf, Y., Alexander, D.C., Lazeyras, F., Hüppi1, P.S. (2011). Probing microstructural information using the CHARMED model in the non-myelinated human newborn brain at 3T.
Lecornet, E., Ahmed, H.U., Hu, Y., Moore, C.M., Nevoux, P., Barratt, D., ...Emberton, M. (2011). PERFORMANCE CHARACTERISTICS OF DIFFERENT TRANSRECTAL (TRB) AND TRANSPERINEAL MAPPING PROSTATE BIOPSY (TPB) STRATEGIES: A SIMULATION ON 96 CYSTOPROSTATECTOMY SPECIMENS (CPTS).
Martelli, F., Del Bianco, S., Zaccanti, G., Liemert, A., Kienle, A., Schweiger, M., ...Wabnitz, H. (2011). Comparison of independent forward solvers for photon migration through layered media.
McClelland, J.R., Hughes, S., Modat, M., Qureshi, A., Ahmad, S., Landau, D.B., ...Hawkes, D.J. (2011). Inter-fraction variations in respiratory motion models.. PHYSICS IN MEDICINE AND BIOLOGY, 56 (1), 251-272. doi:10.1088/0031-9155/56/1/015
McGinty, J., Stuckey, D.W., Soloviev, V.Y., Laine, R., Wylezinska-Arridge, M., Wells, D.J., ...Sardini, A. (2011). In vivo fluorescence lifetime tomography of a FRET probe expressed in mouse. BIOMEDICAL OPTICS EXPRESS, 2 (7), 1907-1917.
Melbourne, A., Cahill, N.D., Tanner, C., Hawkes, D.J., I.E.E.E. (2011). IMAGE REGISTRATION USING AN EXTENDABLE QUADRATIC REGULARISER.
Melbourne, A., Hipwell, J., Modat, M., Mertzanidou, T., Huisman, H., Ourselin, S., Hawkes, D.J. (2011). The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI.. PHYSICS IN MEDICINE AND BIOLOGY, 56 (24), 7693-7708. doi:10.1088/0031-9155/56/24/001
Menys, A., Ahmed, A., Punwani, S., Odille, F., Steward, M., ATKINSON, D., ...Taylor, S.A. (2011). Quantified small bowel motility during MR enterography in Crohn’s disease as a marker of inflammatory activity..
Menys, A., Ahmed, A., Punwani, S., Odille, F., Steward, M., ATKINSON, D., ...Taylor, S.A. (2011). Quantified small bowel motility during MR enterography in Crohn’s disease as a marker of inflammatory activity..
Modat, M., Ridgway, G.R., Daga, P., Cardoso, M.J., Hawkes, D.J., Ashburner, J., Ourselin, S. (2011). Log-Euclidean free-form deformation.
Mohan, P.S., Soloviev, V.Y., Arridge, S.R. (2011). Discontinuous Galerkin method for the forward modelling in optical diffusion tomography. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, 85 (5), 562-574. doi:10.1002/nme.2974
MORGAN, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2011). A framework for modelling the regional variation of white matter microstructure.
MORGAN, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2011). Regional variation models of white matter microstructure.
Morgan, G.L., Zhang,, H., Whitcher,, B., Alexander,, D.C. (2011). A Bayesian framework for modelling the regional variation of white matter microstructure.
Newell, A.J., Griffin, L.D. (2011). Multiscale histogram of oriented gradient descriptors for robust character recognition. 11TH INTERNATIONAL CONFERENCE ON DOCUMENT ANALYSIS AND RECOGNITION (ICDAR 2011), 1085-1089. doi:10.1109/ICDAR.2011.219
Newell, A.J., Griffin, L.D. (2011). Natural image character recognition using oriented basic image features. Proceedings - 2011 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2011, 191-196. doi:10.1109/DICTA.2011.39
Odille, F., Menys, A., Ahmed, A., Punwani, S., Taylor, S., ATKINSON, D. (2011). Quantitative assessment of small bowel motility by nonrigid registration of dynamic MR images.
O'Reilly, M.T., Roth, A., Griffin, L.D., Häusser, M. (2011). A circle-based method for detection of neural fibre cross-sections in classically stained 2D electron micrographs.
Panagiotaki, E., Schneider, T., Siow, B., Lythgoe, M.F., Hall, M.G., Alexander, D.C. (2011). A hierarchy of analytic models for the diffusion MRI signal in brain white matter.
Pedemonte, S., Bousse, A., Hutton, B.F., Arridge, S., Ourselin, S. (2011). Probabilistic graphical model of SPECT/MRI. MACHINE LEARNING IN MEDICAL IMAGING, 7009 167-+.
Pinto Pereira, S.M., McCormack, V.A., Hipwell, J.H., Record, C., Wilkinson, L.S., Moss, S.M., ...dos-Santos-Silva, I. (2011). Localized fibroglandular tissue as a predictor of future tumor location within the breast.. Cancer Epidemiol Biomarkers Prev, 20 (8), 1718-1725. doi:10.1158/1055-9965.EPI-11-0423
Reynolds, M., Doboš, J., Peel, L., Weyrich, T., Brostow, G. (2011). Capturing Time-of-Flight Data with Confidence.
Rijkhorst, E.-.J., Rivens, I., Haar, G.T., Hawkes, D., Barratt, D. (2011). Effects of respiratory liver motion on heating for gated and model-based motion-compensated high-intensity focused ultrasound ablation.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION, MICCAI 2011, PT I, 6891 605-+.
Roth, H.R., McClelland, J.R., Boone, D.J., Modat, M., Cardoso, M.J., Hampshire, T.E., ...Slabaugh, G.G. (2011). Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography. Medical Physics, 38 (6), 3077-3089. doi:10.1118/1.3577603
Schneider, T., Thomas, D.L., Kachramanoglou, C., Ciccarelli, O., Alexander, D.C., Wheeler-Kingshott, C. (2011). Fuzzy partial volume correction of spinal cord DTI parameters.
Sherbondy, A.J., Dyrby, T.B., Rowe, M.C., Ptito, M., Wandell, B., Alexander, D.C. (2011). Microstructure Tracking (Microtrack): an algorithm for estimating a multiscale hierarchical white matter model from diffusion-weighted MRI..
SIOW, B., Cleary, J.O., Greene, N.D., Daga, P., Modat, M., Ordidge, R., ...Lythgoe, M.F. (2011). Mouse Embryo Phenotyping with Contrast-enhanced micro-Diffusion Tensor Imaging.
SIOW, B., Drobnjak, I., Lythgoe, M.F., Alexander, D.C. (2011). Optimised Gradient Waveform Spin-Echo sequence for Diffusion Weighted MR in a Microstructure Phantom.
Soloviev, V.Y., Arridge, S.R. (2011). Fluorescence lifetime optical tomography in weakly scattering media in the presence of highly scattering inclusions. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 28 (7), 1513-1523.
Soloviev, V.Y., Arridge, S.R. (2011). Optical projection tomography for light scattering media.
Soloviev, V.Y., Arridge, S.R. (2011). Optical Tomography in weakly scattering media in the presence of highly scattering inclusions. BIOMEDICAL OPTICS EXPRESS, 2 (3), 440-451. doi:10.1364/BOE.2.000440
Soloviev, V.Y., Bassi, A., Fieramonti, L., Valentini, G., D'Andrea, C., Arridge, S.R. (2011). Angularly selective mesoscopic tomography. PHYSICAL REVIEW E, 84 (5), doi:10.1103/PhysRevE.84.051915
Soloviev, V.Y., McGinty, J., Stuckey, D.W., Laine, R., Wylezinska-Arridge, M., Wells, D.J., ...Arridge, S.R. (2011). Forster resonance energy transfer imaging in vivo with approximated radiative transfer equation. APPLIED OPTICS, 50 (36), 6583-6590. doi:10.1364/AO.50.006583
Somayajula, S., Panagiotou, C., Rangarajan, A., Li, Q., Arridge, S.R., Leahy, R.M. (2011). PET Image Reconstruction Using Information Theoretic Anatomical Priors. IEEE TRANSACTIONS ON MEDICAL IMAGING, 30 (3), 537-549. doi:10.1109/TMI.2010.2076827
Steeden, J.A., ATKINSON, D., Hansen, M.S., Taylor, A.M., Muthurangu, V. (2011). Rapid flow assessment of congenital heart disease using high spatio-temporal gated spiral phase contrast MR. Radiology, 260 (1), 79-87. doi:10.1148/radiol.11101844
Steeden, J.A., ATKINSON, D., Taylor, A.M., Muthurangu, V. (2011). Rapid flow assessment of congenital heart disease using high spatio-temporal gated spiral phase-contrast..
Taneja, A., Ballan, L., Puwein, J., Brostow, G.J., Pollefeys, M. (2011). 3D Reconstruction and Video-Based Rendering of Casually Captured Videos.
Tanner, C., White, M., Guarino, S., Hall-Craggs, M.A., Douek, M., Hawkes, D.J. (2011). Large breast compressions: Observations and evaluation of simulations. MEDICAL PHYSICS, 38 (2), 682-690. doi:10.1118/1.3525837
Tarvainen, T., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2011). Image reconstruction in diffuse optical tomography using the coupled radiative transport-diffusion model. JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER, 112 (16), 2600-2608. doi:10.1016/j.jqsrt.2011.07.008
Thompson, S.A., Hu, M., Johnsen, S., Gurusamy, K., Davidson, B., Hawkes, D. (2011). Towards Image Guided Laparoscopic Liver Surgery, Defining the System Requirement.
Tremoulheac, B., Batchelor, P.G., Menys, A., Atkinson, D. (2011). Decomposition of dynamic MR images with low-rank and sparse matrix separation.
Usman, M., Prieto, C., Odille, F., ATKINSON, D., Schaeffter, T., Batchelor, P.G. (2011). A computationally efficient OMP based compressed sensing reconstruction for dynamic MRI. Physics in Medicine and Biology, 56 (7), N99-N114. doi:10.1088/0031-9155/56/7/N02
Yang, G., Hipwell, J.H., Hawkes, D.J., Arridge, S.R. (2011). Unconstrained Simultaneous Scheme to Fully Couple Reconstruction and Registration for Digital Breast Tomosynthesis: A Feasible Study.
Yang, G., Hipwell, J.H., Tanner, C., Hawkes, D.J., Arridge, S.R. (2011). Alternating Reconstruction and Registration for Digital Breast Tomosynthesis.
ZHANG, H., Barazany, D., Assaf, Y., Lundell, H.M., Alexander, D.C., Dyrby, T. (2011). A comparative study of axon diameter imaging techniques using diffusion MRI.
ZHANG, H., Dyrby, T.B., Alexander, D.C. (2011). Axon diameter mapping in crossing fibers with diffusion MRI. In Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011. .
ZHANG, H., Hubbard, P.L., Parker, G.J.M., Alexander, D.C. (2011). Axon diameter mapping in the presence of orientation dispersion using diffusion MRI.
Zhang, H., Hubbard, P.L., Parker, G.J.M., Alexander, D.C. (2011). Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. NeuroImage, 56 (3), 1301-1315. doi:10.1016/j.neuroimage.2011.01.084
Zhuang, X., Arridge, S., Hawkes, D.J., Ourselin, S. (2011). A nonrigid registration framework using spatially encoded mutual information and free-form deformations.. IEEE Trans Med Imaging, 30 (10), 1819-1828. doi:10.1109/TMI.2011.2150240
Zhuang, X., Shi, W., Duckett, S.G., Wang, H., Razavi, R., Hawkes, D.J., ...Ourselin, S. (2011). A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions..

2010

Alexander, D.C., Hubbard, P.L., Hall, M.G., Moore, E.A., Ptito, M., Parker, G.J.M., Dyrby, T.B. (2010). Orientationally invariant indices of axon diameter and density from diffusion MRI.. NEUROIMAGE, 52 (4), 1374-1389. doi:10.1016/j.neuroimage.2010.05.043
Alexander, D.C., Seunarine, K.K. (2010). Mathematics of Crossing Fibres. In Jones, D.K. (Ed.), Diffusion MRI. Oxford University Press, USA.
Allain, B., Hu, M., Lovat, L.B., Cook, R.J., Vercauteren, T., Ourselin, S., Hawkes, D.J. (2010). A system for biopsy site re-targeting with uncertainty in gastroenterology and oropharyngeal examinations..
Amati, C., Brostow, G.J. (2010). Modeling 2.5D Plants from Ink Paintings..
Ballan, L., Brostow, G.J., Puwein, J., Pollefeys, M. (2010). Unstructured Video-Based Rendering: Interactive Exploration of Casually Captured Videos. ACM TRANSACTIONS ON GRAPHICS, 29 (4), doi:10.1145/1778765.1778824
Bousse, A., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., Arridge, S., Hutton, B.F. (2010). Weighted MRI-Based bowsher priors for SPECT brain image reconstruction. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3519-3522.
Bousse, A., Fuin, N., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., ...Hutton, B.F. (2010). Point spread function optimization in SPECT. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 2061-2065.
Cahill, N.D., Noble, J.A., Hawkes, D.J. (2010). ACCOUNTING FOR CHANGING OVERLAP IN VARIATIONAL IMAGE REGISTRATION.
Chen, B., Siow, B., Carmichael, D., Odille, F., Ordidge, R., Todd-Pokropek, A. (2010). Characterization of trabecular orientation in chicken femur by multi-directional SPENT (Sub-Pixel Enhancement of Non-Uniform Tissue).
Crosier, M., Griffin, L.D. (2010). Using Basic Image Features for Texture Classification. INTERNATIONAL JOURNAL OF COMPUTER VISION, 88 (3), 447-460. doi:10.1007/s11263-009-0315-0
D'Andrea, C., Ducros, N., Bassi, A., Arridge, S., Valentini, G. (2010). Fast 3D optical reconstruction in turbid media using spatially modulated light. BIOMEDICAL OPTICS EXPRESS, 1 (2), 471-481.
Drobnjak, I., Siow, B., Alexander, D. (2010). Optimizing gradient waveforms for microstructure sensitivity in diffusion-weighted MR. Journal of Magnetic Resonance,
Ducros, N., D'andrea, C., Valentini, G., Rudge, T., Arridge, S., Bassi, A. (2010). Full-wavelet approach for fluorescence diffuse optical tomography with structured illumination. OPTICS LETTERS, 35 (21), 3676-3678.
Dyrby, T.B., Hubbard, P.L., Ptito, M., Hall, M.G., Alexander, D.C. (2010). Dependence of Axon Diameter Index on Maximum Gradient Strength.
Elisee, J.P., Gibson, A., Arridge, S. (2010). Combination of boundary element method and finite element method in diffuse optical tomography. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 57 (11), 2737-2745. doi:10.1109/TBME.2010.2055868
Fuin, N., Bousse, A., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B. (2010). Collimator Design in SPECT, an Optimisation Tool. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3149-3154.
Griffin, L.D., Lillholm, M. (2010). Symmetry Sensitivities of Derivative-of-Gaussian Filters. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 32 (6), 1072-1083. doi:10.1109/TPAMI.2009.91
Han, L., Hipwell, J.H., Taylor, Z.A., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method..
Hu, M., Hawkes, D.J., Penney, G.P., Rueckert, D., Edwards, P.J., Bello, F., ...Casula, R. (2010). A ROBUST MOSAICING METHOD FOR ROBOTIC ASSISTED MINIMALLY INVASIVE SURGERY.
Hu, M., Penney, G., Rueckert, D., Edwards, P., Bello, F., Figl, M., ...Miao, Z. (2010). A Robust Mosaicing Method with Super-Resolution for Optical Medical Images.
Hu, M.X. (2010). Non-rigid reconstruction of the beating heart surface for minimally invasive cardiac surgery.
Hu, Y., Rijkhorst, E.-.J., Manber, R., Hawkes, D.J., Barratt, D.C. (2010). Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift..
Hu, Y., van den Boom, R., Carter, T., Taylor, Z., Hawkes, D., Ahmed, H.U., ...Barratt, D. (2010). A comparison of the accuracy of statistical models of prostate motion trained using data from biomechanical simulations.. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 103 (2-3), 262-272. doi:10.1016/j.pbiomolbio.2010.09.009
Jafar, Y.M., Hipwell, J.H., Tanner, C., Hawkes, D.J. (2010). Detection of Stable Mammographic Features under Compression using Simulated Mammograms.
Kazantsev, D., Pedemonte, S., Bousse, A., Panagiotou, C., Arridge, S.R., Hutton, B.F., Ourselin, S. (2010). ET Bayesian reconstruction using automatic bandwidth selection for joint entropy optimization. 2010 IEEE NUCLEAR SCIENCE SYMPOSIUM CONFERENCE RECORD (NSS/MIC), 3301-3307.
Kezele, I., Alexander, D.C., Batchelor, P.G., Mangin, J.-.F., Le Bihan, D., Poupon, C. (2010). Measuring Microstructural Features Related to Neuronal Activation Using Diffusion MRI and Three-Compartment Diffusion Models: A Feasibility Study.
Kezele, I., Batchelor, P.G., Poupon, C., Mangin, J.-.F., Le Bihan, D., Alexander, D.C. (2010). Feasibility of Measuring Microstructural Features of Systems with Intermediate Exchange and Sub-Cellular Compartmentalization Using Diffusion MRI.
Kleinnijenhuis, M., Barth, M., Alexander, D.C., Van Cappellen Van Walsum, A.-.M., Norris, D.G. (2010). SWI-Informed Diffusion Tensor Tractography.
Kumar, P., Thompson, S.A., Elhage, O., Challacombe, B.J., Penney, G., Hawkes, D. (2010). CLINICAL ASSESSMENT OF MRI GUIDED ROBOTIC RADICAL PROSTATECTOMY. JOURNAL OF ENDOUROLOGY, 24 A84.
Mac Aodha, O., Brostow, G.J., Pollefeys, M. (2010). Segmenting video into classes of algorithm-suitability..
Melbourne, A., Hawkes, D.J., Atkinson, D. (2010). Data driven groupwise registration of diffusion weighted images.
Melbourne, A., Hawkes, D.J., Atkinson, D. (2010). Data driven groupwise registration of diffusion weighted images..
Melbourne, A., Hipwell, J.H., Hawkes, D.J. (2010). The Effect of Motion Correction on Pharmacokinetic Parameter Estimation..
Melbourne, A., Ridgway, G., Hawkes, D.J. (2010). Image Similarity Metrics in Image Registration.
Mertzanidou, T., Hipwell, J.H., Cardoso, M.J., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification..
Mertzanidou, T., Hipwell, J.H., Tanner, C., Hawkes, D.J. (2010). An intensity-based approach to X-ray mammography - MRI registration.
Modat, M., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Nonrigid registration with differential bias correction using normalised mutual information.
Modat, M., Ridgway, G.R., Taylor, Z.A., Lehmann, M., Barnes, J., Hawkes, D.J., ...Ourselin, S. (2010). Fast free-form deformation using graphics processing units.. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 98 (3), 278-284. doi:10.1016/j.cmpb.2009.09.002
Modat, M., Taylor, Z., Ridgway, G., Barnes, J., Wild, E., Hawkes, D.J., ...Ourselin, S. (2010). Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington’s Disease Data.
Modat, M., Vercauteren, T., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images.
Morgan, G.L., Newbould, R.D., Whitcher, B., Alexander, D.C. (2010). Polynomial models of the spatial variation of axon radius in white matter.
Morgan, G.L., Zhang, H., Whitcher, B., Alexander, D.C. (2010). A spatial variation model of white matter microstructure.
Muir, J., Arancibia-Carcamo, I.L., MacAskill, A.F., Smith, K.R., Griffin, L.D., Kittler, J.T. (2010). NMDA receptors regulate GABAA receptor lateral mobility and clustering at inhibitory synapses through serine 327 on the γ2 subunit.. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107 (38), 16679-16684. doi:10.1073/pnas.1000589107
Newell, A.J., Griffin, L.D., Morgan, R.M., Bull, P.A. (2010). Texture-based Estimation of Physical Characteristics of Sand Grains.. BMVC,
Newell, A.J., Griffin, L.D., Morgan, R.M., Bull, P.A. (2010). Texture-based estimation of physical characteristics of sand grains.
Odille, F., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). A parallel computing framework for motion-compensated reconstruction based on the motion point-spread function.
Odille, F., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). On the accuracy of nonrigid motion correction.
Odille, F., Steeden, J.A., Muthurangu, V., Atkinson, D. (2010). Automatic segmentation propagation of the aorta in real-time phase contrast MRI using nonrigid Registration. Journal of Magnetic Resonance Imaging, 33 (1), 232-238. doi:10.1002/jmri.22402
Odille, F., Steeden, J., Muthurangu, V., Atkinson, D. (2010). Nonrigid registration based segmentation for the analysis of real-time cardiac flow images.
Odille, F., Uribe, S., Batchelor, P.G., Prieto, C., Schaeffter, T., Atkinson, D. (2010). Model-Based Reconstruction for Cardiac Cine MRI Without ECG or Breath Holding. Magnetic Resonance in Medicine, 63 (5), 1247-1257. doi:10.1002/mrm.22312
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Pedemonte, S., Cardoso, M.J., Bousse, A., Panagiotou, C., Kazantsev, D., Arridge, S., ...Ourselin, S. (2010). Class Conditional Entropic Prior for MRI Enhanced SPECT Reconstruction.
Pereira, S.M.P., Hipwell, J.H., McCormack, V.A., Tanner, C., Moss, S.M., Wilkinson, L.S., ...Kliger, C.J. (2010). Automated registration of diagnostic to prediagnostic x-ray mammograms: Evaluation and comparison to radiologists' accuracy. MED PHYS, 37 (9), 4530-4539. doi:10.1118/1.3457470
Pinto Pereira, S., McCormack, V., Hipwell, J., Record, C., Wilkinson, L., Moss, S., ...Silva, I. (2010). Do breast cancers arise in areas of the breast that pre-diagnostically had high mammographic density?.
Pinto Pereira, S.M., Hipwell, J.H., McCormack, V.A., Tanner, C., Moss, S.M., Wilkinson, L.S., ...Kliger, C.J. (2010). Automated registration of diagnostic to prediagnostic x-ray mammograms: Evaluation and comparison to radiologists' accuracy.. Medical physics, 37 (9), 4530-4539. doi:10.1118/1.3457470
Prevost, R., Buckley, D.L., Alexander, D.C. (2010). Optimization of the DCE-CT protocol using active imaging.
Prieto, C., Knowles, B.R., Usman, M., Batchelor, P.G., Odille, F., Atkinson, D., Schaeffter, T. (2010). Autocalibrated approach for the combination of compressed sensing and SENSE.
Prieto, C., Uribe, S., Razavi, R., Atkinson, D., Schaeffter, T. (2010). 3D Undersampled Golden-Radial Phase Encoding for DCE-MRA using inherently Regularized Iterative SENSE. Magnetic Resonance in Medicine, 64 (2), 514-526. doi:10.1002/mrm.22446
Rijkhorst, E.-.J., Heanes, D., Odille, F., Hawkes, D.J., Barratt, D.C. (2010). Simulating Dynamic Ultrasound Using MR-derived Motion Models to Assess Respiratory Synchronisation for Image-Guided Liver Interventions..
Roth, H., McClelland, J., Boone, D., Hu, M., Ourselin, S., Slabaugh, G., ...Medicsight, P.L.C. (2010). Conformal Mapping of the Inner Colon Surface to a Cylinder for the Application of Prone to Supine Registration.
Roth, H., McClelland, J., Modat, M., Boone, D., Hu, M., Ourselin, S., ...Hawkes, D. (2010). Establishing spatial correspondence between the inner colon surfaces from prone and supine CT colonography..
Rudge, T.J., Soloviev, V., Arridge, S.R. (2010). Fast image reconstruction in fluoresence optical tomography using data compression. Optics Letters, 35 (5), 763-766. doi:10.1364/OL.35.000763
Rueckert, D., Hawkes, D., Gerig, G., Yang, G.-.Z. (2010). Special Issue on the 12th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2009. MEDICAL IMAGE ANALYSIS, 14 (5), 631-632. doi:10.1016/j.media.2010.06.008
Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2010). Optimized diffusion MRI protocols for estimating axon diameter with known fibre orientation.
Schneider, T., Wheeler-Kingshott, C.A.M., Alexander, D.C. (2010). In-vivo estimates of axonal characteristics using optimized diffusion MRI protocols for single fibre orientation..
Schweiger, M., Dorn, O., Zacharopoulos, A., Nissila, I., Arridge, S.R. (2010). 3D level set reconstruction of model and experimental data in Diffuse Optical Tomography. Optics Express, 18 (1), 150-164. doi:10.1364/OE.18.000150
Sherbondy, A.J., Rowe, M.C., Alexander, D.C. (2010). MicroTrack: an algorithm for concurrent projectome and microstructure estimation.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2010, PT I, 6361 183-+.
SIOW, B., Carmichael, D.W., Riegler, J., Alexander, D.A., Lythgoe, M.F., Ordidge, R. (2010). Detection of Human Mononuclear Cells Labelled with Micron-Sized Iron Oxide Particles Using the Sub-Pixel Enhancement of Nonuniform Tissue (SPENT) Sequence.
Soloviev, V.Y., D'Andrea, C., Mohan, P.S., Valentini, G., Cubeddu, R., Arridge, S.R. (2010). Fluorescence lifetime optical tomography with Discontinuous Galerkin discretisation scheme. BIOMEDICAL OPTICS EXPRESS, 1 (3), 998-1013.
Soloviev, V.Y., McGinty, J., Tahir, K.B., Laine, R., Stuckey, D.W., Mohan, P.S., ...Arridge, S.R. (2010). Tomographic imaging of flourescence resonance energy transfer in highly light scattering media.
Soloviev, V.Y., McGinty, J., Tahir, K.B., Laine, R., Stuckey, D.W., Mohan, P.S., ...Arridge, S.R. (2010). Tomographic imaging of Fluorescence Resonance Energy Transfer in highly light scattering media.
Sorensen, T.S., Prieto, C., Atkinson, D., Hansen, M.S., Schaeffter, T. (2010). GPU accelerated iterative SENSE reconstruction of radial phase encoded whole-heart MRI.
Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Assessing the hemodynamic response to exercise - A novel MR approach.
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Steeden, J.A., Atkinson, D., Taylor, A.M., Muthurangu, V. (2010). Split-acquisition real-time CINE phase-contrast MR flow measurements. Magnetic Resonance in Medicine, 64 (6), 1664-1670. doi:10.1002/mrm.22615
Sutcliffe, A.G., Akindolie, O., Griffin, L.D., Baker, A. (2010). An objective method to quantify stool colour in neonatal cholestasis.. 43rd Ann Mtg Eur Soc Paed Gastro,
Sweet, A., Alexander, D.C. (2010). Reduced Encoding Persistent Angular Structure.
Tanner, C., Carter, T., Hawkes, D., Szekely, G. (2010). Cylindrical Affine Transformation Model for Image Registration.
Tanner, C., Hipwell, J.H., Hawkes, D.J., Szekely, G. (2010). Breast Shapes on Real and Simulated Mammograms.
TARVAINEN, T., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2010). Corrections to linear methods for diffuse optical tomography using approximation error modelling. Biomedical Optics Express, 1 (1), 209-222. doi:10.1364/BOE.1.000209
Tarvainen, T., Kolehmainen, V., Pulkkinen, A., Vauhkonen, M., Schweiger, M., Arridge, S.R., Kaipio, J.P. (2010). Approximation error approach for compensating for modelling errors between the radiative transfer equation and diffusion approximation in diffuse optical tomography. Inverse Problems, 26 015005-. doi:10.1088/0266-5611/26/1/015005
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Wells, J.C.K., Griffin, L., Treleaven, P. (2010). Independent Changes in Female Body Shape with Parity and Age: A Life-History Approach to Female Adiposity. AMERICAN JOURNAL OF HUMAN BIOLOGY, 22 (4), 456-462. doi:10.1002/ajhb.21017
Wheeler-Kingshott, C.A.M., Ciccarelli, O., Schneider, T., Alexander, D.C., Cercignani, M. (2010). A new approach to structural integrity assessment based on axial and radial diffusivities.
Yang, G., Hipwell, J.H., Clarkson, M.J., Tanner, C., Mertzanidou, T., Gunn, S., ...Arridge, S.R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis.
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Yogarajah, M., Focke, N.K., Bonelli, S.B., Thompson, P., Vollmar, C., McEvoy, A.W., ...Duncan, J.S. (2010). The structural plasticity of white matter networks following anterior temporal lobe resection.. BRAIN, 133 2348-2364. doi:10.1093/brain/awq175
Zhang, H., Alexander, D.C. (2010). Axon diameter mapping in the presence of orientation dispersion with diffusion MRI.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 13 (Pt 1), 640-647.
Zhuang, X., Hawkes, D.J., Ourselin, S. (2010). Spatial Information Encoded Mutual Information for Nonrigid Registration..
Zhuang, X., Leung, K., Rhode, K., Razavi, R., Hawkes, D., Ourselin, S. (2010). Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy.
Zhuang, X., Rhode, K.S., Razavi, R.S., Hawkes, D.J., Ourselin, S. (2010). A registration-based propagation framework for automatic whole heart segmentation of cardiac MRI.. IEEE Trans Med Imaging, 29 (9), 1612-1625. doi:10.1109/TMI.2010.2047112
Zhuang, X., Yao, C., Ma, Y., Hawkes, D.J., Penney, G.P., Ourselin, S. (2010). Registration-based propagation for whole heart segmentation from compounded 3D echocardiography..

2009

Alexander, D.C. (2009). Modelling, Fitting and Sampling in Diffusion MRI. In Laidlaw, D., Weickert, J. (Eds.), Visualization and Processing of Tensor Fields. (pp. 3-20). Springer Verlag.
Alexander, D.C., Hubbard, P.L., Hall, M.G., Moore, E.A., Ptito, M., Parker, G.J.M., Dyrby, T.B. (2009). Orientationally invariant axon-size and density weighted MRI.
Allain, B., Hu, M.X., Lovat, L.B., Ourselin, S., Cook, R., Hawkes, D.J. (2009). Biopsy Site Re-localisation based on the Computation of Epipolar Lines from Two Previous Endoscopic Images.
Allain, B., Price, A., Vercauteren, T.K., Cook, R.J., Ourselin, S., Lythgoe, M.F., Hawkes, D.J. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging.
Arridge, S.R., Schotland, J.C. (2009). Optical tomography: forward and inverse problems. INVERSE PROBLEMS, 25 (12), doi:10.1088/0266-5611/25/12/123010
Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S. (2009). Imaging of highly scattering media by spatially modulated pulsed light.
Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2009). Detection of inhomogeneities in diffusive media using spatially modulated light. Optics Letters, 34 2156-2158.
Beard, P.C., Laufer, J.G., Cox, B.T., Arridge, S.R. (2009). Quantitative photoacoustic imaging: measurement of absolute chromophore concentrations for physiological and molecular imaging. In Wang, L.V. (Ed.), Photoacoustic Imaging and Spectroscopy. Taylor and Francis.
Boubertakh, R., Prieto, C., Batchelor, P.G., Uribe, S., Atkinson, D., Eggers, H., ...Schaeffter, T. (2009). Whole-heart imaging using undersampled radial phase encoding (RPE) and iterative sensitivity encoding (SENSE) reconstruction. Magnetic Resonance in Medicine, 62 (5), 1331-1337. doi:10.1002/mrm.22102
Brostow, G.J., Fauqueur, J., Cipolla, R. (2009). Semantic object classes in video: A high-definition ground truth database. PATTERN RECOGN LETT, 30 (2), 88-97. doi:10.1016/j.patrec.2008.04.005
Cahill, N.D., Noble, J.A., Hawkes, D.J. (2009). DEMONS ALGORITHMS FOR FLUID AND CURVATURE REGISTRATION.
Cahill, N.D., Noble, J.A., Hawkes, D.J. (2009). A Demons Algorithm for Image Registration with Locally Adaptive Regularization.
Chinchapatnam, P., Ginks, M., Sermesant, M., Rhode, K., Arridge, S., Lambiase, P., ...Razavi, R. (2009). A novel method of estimating electrical recruitability of myocardial tissue using an electrophysiological model.
Chinchapatnam, P., Rhode, K.S., Ginks, M., Mansi, T., Peyrat, J.M., Lambiase, P., ...Sermesant, M. (2009). Estimation of volumetric myocardial apparent conductivity from endocardial electro-anatomical mapping.. Conf Proc IEEE Eng Med Biol Soc. 2009;, (1), 2907-2910.
Chinchapatnam, P., Rhode, K.S., Ginks, M., Nair, P.B., Razavi, R., Arridge, S.R., Sermesant, M. (2009). Voxel Based Adaptive Meshless Method for Cardiac Electrophysiology Simulation..
Choe, R., Konecky, S.D., Corlu, A., Lee, K., Durduran, T., Busch, D.R., ...Fraker, D.L. (2009). Differentiation of benign and malignant breast tumors by in-vivo three-dimensional parallel-plate diffuse optical tomography. JOURNAL OF BIOMEDICAL OPTICS, 14 (2), doi:10.1117/1.3103325
Clarkson, M.J., Ourselin, S., Nielsen, C., Leung, K.K., Barnes, J., Whitwell, J.L., ...Jack, C.R. (2009). Comparison of phantom and registration scaling corrections using the ADNI cohort. NeuroImage, 47 (4), 1506-1513. doi:10.1016/j.neuroimage.2009.05.045
Clayden, J.D., Nagy, Z., Alexander, D.C., Clark, C.A. (2009). Axon radius estimation using optimised Stejskal-Tanner and dual spin echo sequences at modest SNR.
Clayden, J.D., Nagy, Z., Hall, M.G., Clark, C.A., Alexander, D.C. (2009). Active imaging with dual spin-echo diffusion MRI.. 264-275.
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Cox, B.T., Arridge, S.R., Beard, P.C. (2009). Estimating chromophore distributions from multiwavelength photoacoustic images. Journal of the Optical Society of America, 26 (2), 443-455. doi:10.1364/JOSAA.26.000443
Dyrby, T.B., Baare, W.F.C., Alexander, D.C., Jelsing, J., Garde, E., Sogaard, L.V. (2009). Longitudinal changes in diffusivity after long-term storage of postmortem tissue.
Edgar, J., Muthurangu, V., Taylor, A., Atkinson, D. (2009). Undersampled Spirals for Real-time Flow Measurements.
Fonteijn, H.M., Hall, M.G., Alexander, D.C. (2009). A study on the validity of the tortuosity approximation for extracellular diffusion using monte-carlo simulations.
Griffin, L.D. (2009). Symmetries of 2-D Images: Cases without Periodic Translations. JOURNAL OF MATHEMATICAL IMAGING AND VISION, 34 (3), 259-269. doi:10.1007/s10851-009-0148-z
Griffin, L.D., Lillholm, M., Crosier, M., van Sande, J. (2009). Basic Image Features (BIFs) Arising from Approximate Symmetry Type.
Hall, M.G., Alexander, D.C. (2009). Convergence and parameter choice for Monte-Carlo simulations of diffusion MRI. IEEE Transactions on Medical Imaging, 28 (9), 1354-1364.
Haroon, H.A., Morris, D.M., Embleton, K.V., Alexander, D.C., Parker, G.J.M. (2009). Using the Model-Based Residual Bootstrap to Quantify Uncertainty in Fiber Orientations From Q-Ball Analysis. IEEE TRANSACTIONS ON MEDICAL IMAGING, 28 (4), 535-550. doi:10.1109/TMI.2008.2006528
Hiltunen, P., Arridge, S., Prince, S. (2009). A combined reconstructions classification method for diffuse optial tomography. Physics in Medicine and Biology, 54 6457-6476.
Hughes, S., Boutland, J., Adams, M., McClelland, J., Deehan, C., Hawkes, D., Landau, D. (2009). A study to find a suitable fiducial marker to validate the use of non-rigid registration (NRR) algorithms and 4D-CT motion modelling in lung cancer radiotherapy. LUNG CANCER, 63 S34.
Hughes, S., McClelland, J., Tarte, S., Lawrence, D., Ahmad, S., Hawkes, D., Landau, D. (2009). Assessment of two novel ventilatory surrogates for use in the delivery of gated/tracked radiotherapy for non-small cell lung cancer. RADIOTHERAPY AND ONCOLOGY, 91 (3), 336-341. doi:10.1016/j.radonc.2009.03.016
Hu, M., Penney, G.P., Rueckert, D., Edwards, P.J., Bello, F., Casula, R., ...Hawkes, D.J. (2009). Non-rigid Reconstruction of the Beating Heart Surface for Minimally Invasive Cardiac Surgery.
Hu, Y., Ahmed, H.U., Allen, C., Pendse, D., Sahu, M., Emberton, M., ...Barratt, D. (2009). MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions.
Hu, Y., Ahmed, H.U., Allen, C., Pendsé, D., Sahu, M., Emberton, M., ...Barratt, D. (2009). MR to ultrasound image registration for guiding prostate biopsy and interventions..
Karssemeijer, N., Huisman, H., Hawkes, D., Hipwell, J., Boehler, T., Lesniak, J., ...Hahn, H. (2009). INTEGRATING BIOLOGICAL KNOWLEDGE, NOVEL IMAGING MODALITIES, AND MODELING IN BREAST CANCER DIAGNOSIS.
King, A.P., Boubertakh, R., Rhode, K.S., Ma, Y.L., Chinchapatnam, P., Gao, G., ...Gill, J.S. (2009). A subject-specific technique for respiratory motion correction in image-guided cardiac catheterisation procedures. MEDICAL IMAGE ANALYSIS, 13 (3), 419-431. doi:10.1016/j.media.2009.01.003
Kolehmainen, V., Schweiger, M., Nissila, I., Tarvainen, T., Arridge, S.R., Kaipio, J.P. (2009). Approximation errors and model reduction in three-dimensional diffuse optical tomography. Journal of the Optical Society of the America A, 26 (10), 2257-2267. doi:10.1364/JOSAA.26.002257
Lillholm, M., Griffin, L.D. (2009). Statistics and category systems for the shape index descriptor of local 2nd order natural image structure. IMAGE AND VISION COMPUTING, 27 (6), 771-781. doi:10.1016/j.imavis.2008.08.003
McGinty, J., Soloviev, V.Y., Tahir, K.B., Laine, R., Stuckey, D.W., Hajnal, J.V., ...Arridge, S.R. (2009). Three-dimensional imaging of Förster resonance energy transfer in heterogeneous turbid media by tomographic fluorescent lifetime imaging. Optics Letters, 34 (17), 2772-2774.
Melbourne, A., Collins, D.J., Leach, M.O., Koh, D.-.M., Hawkes, D.J., Atkinson, D. (2009). Contrast Enhanced Image Registration using Kullbach-Leibler Assisted Image Matching and Patching (KLAMP).
Melbourne, A., Hawkes, D.J., Atkinson, D. (2009). Image registration using uncertainty coefficients.
Melbourne, A., Orton, M., Collins, D.J., Koh, D.-.M., Leach, M.O., Hawkes, D.J., Atkinson, D. (2009). The effect of image registration on pharmacokinetic parameter extraction using 3D DCE-MRI.
Miyazaki, K., Orton, M.R., Koh, D.-.M., Lewington, V., Atkinson, D., Hawkes, D.J., ...Collins, D.J. (2009). Evaluation of slope-based hepatic perfusion index quantification methods against dual-input kinetic model based approach.
Miyazaki, K., Orton, M.R., Lewington, V., Atkinson, D., Hawkes, D.J., Leach, M.O., Collins, D.J. (2009). Hepatic perfusion quantification using a dual-input kinetic model with a novel portal venous estimation method: Evaluation against other model- and slope-based perfusion quantification approaches.
Nagy, Z., Alexander, D.C., Weiskopf, N. (2009). Measuring and correcting errors that occur in diffusion weighted images due to non-ideal gradient linearity.
Nedjati-Gilani, S., Alexander, D.C. (2009). Fanning and bending sub-voxel structures in diffusion MRI.
Odille, F., Uribe, S., Schaeffter, T., Atkinson, D. (2009). Cardiac and respiratory motion compensated reconstruction driven only by 1D navigators.
Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2009). Onset estimation for dual input DCE-MRI liver data : information criteria used to determine statistical optimality of global or pixel-wise onset estimation.
Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2009). Novel method of portal delay and dispersion estimation for dual-input kinetic modelling of DCE-MRI liver data.
Orton, M.R., Miyazaki, K., Koh, D.-.M., Collins, D.J., Hawkes, D.J., Atkinson, D., Leach, M.O. (2009). Optimizing Functional Parameter Accuracy for Breath-hold DCE-MRI of Liver Tumours. Physics in Medicine and Biology, 54 (7), 2197-2215. doi:10.1088/0031-9155/54/7/023
Panagiotaki, E., Fonteijn, H.M., Nedjati-Gilani, S., Hall, M.G., Alexander, D.C. (2009). Exploring analytic models of the diffusion MR signal in fixed rat brain tissue.
Panagiotaki, E., Fonteijn, H., Siow, B., Hall, M.G., Price, A., Lythgoe, M.F., Alexander, D.C. (2009). Two-compartment models of the diffusion MR signal in brain white matter.. 1 329-336.
Panagiotou, C., Somayajula, S., Gibson, A.P., Schweiger, M., Leahy, R.M., Arridge, S.R. (2009). Information theoretic regularization in diffuse optical tomography.. Journal of the Optical Society of America, 26 (5), 1277-1290.
Panagiotou, C., Somayajula, S., Gibson, A.P., Schweiger, M., Leahy, R.M., Arridge, S.R. (2009). DIFFUSION OPTICAL TOMOGRAPHY USING ENTROPIC PRIORS.
Papastavrou, Y., Cash, D., Hawkes, D., Hutton, B. (2009). A Multi-component similarity measure for improved robustness of non-rigid registration of combined FDG PET-CT head and neck images.
Prieto, C., Uribe, S., Batchelor, P., Irarrazaval, P., Razavi, R., Atkinson, D., Schaeffter, T. (2009). 3D Undersampled Golden-Radial Phase Encoding Using Iterative Reconstructions and Inherent Regularization.
Prieto, C., Uribe, S., Razavi, R., Atkinson, D., Beerbaum, P., Schaeffter, T. (2009). 3D Dynamic Contrast-Enhanced Using Undersampled Golden-Radial Phase Encoding.
Prince, S.J.D., Alexander, D.C. (2009). Super-resolving patches in diffusion MRI using canonical fibre configurations.
Punwani, S., Halligan, S., Tolan, D., Taylor, S.A., Hawkes, D. (2009). Quantitative assessment of colonic movement between prone and supine patient positions during CT colonography.. BRITISH JOURNAL OF RADIOLOGY, 82 (978), 475-481. doi:10.1259/bjr/91937173
Ridgway, G.R., Omar, R., Ourselin, S., Hill, D.L.G., Warren, J.D., Fox, N.C. (2009). Issues with threshold masking in voxel-based morphometry of atrophied brains.. NeuroImage, 44 (1), 99-111. doi:10.1016/j.neuroimage.2008.08.045
Schneider, T., Alexander, D.C., Wheeler-Kingshott, C.A.M. (2009). Preliminary investigation of position dependency of radial diffusivity in the cervical spinal cord.
Sermesant, M., Billet, F., Chabiniok, R., Mansi, T., Chinchapatnam, P., Moireau, P., ...Lambiase, P. (2009). Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy..
Sermesant, M., Billet, F., Chabiniok, R., Mansi, T., Chinchapatnam, P., Moireau, P., ...Lambiase, P. (2009). Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy.
Seunarine, K.K., Alexander, D.C. (2009). Multiple fibers: beyond the diffusion tensor. In Diffusion MRI: from quantitative measurement to in vivo neuroanatomy. (pp. 55-72). Academic Press.
Shepherd, T., Alexander, D.C. (2009). Mid-Level Shape Priors for Supervised Contouring.
Shepherd, T., Alexander, D.C. (2009). Probabilistic Time Series Models for Statistical Shape Priors in Region Contouring.
Soloviev, V.Y., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2009). Combined reconstruction of fluorescent and optical parameters using time-resolved data. Applied Optics, 48 (1), 28-36. doi:10.1364/AO.48.000028
Sorensen, T.S., Atkinson, D., Schaeffter, T., Hansen, M.S. (2009). Real-Time Reconstruction of Sensitivity Encoded Radial Magnetic Resonance Imaging Using a Graphics Processing Unit. IEEE Transactions on Medical Imaging, 28 (12), 1974-1985. doi:10.1109/TMI.2009.2027118
Steeden, J.A., Atkinson, D., Taylor, A., Muthurangu, V. (2009). Real-time Flow Measurements for the Assessment of Hemodynamic Response to Exercise.
Tanner, C., White, M., Guarino, S., Hall-Craggs, M.A., Douek, M., Hawkes, D.J. (2009). Anisotropic Behaviour of Breast Tissue for Large Compressions.
Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2009). On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution.. Medical Image Analysis, 13 (2), 234-244. doi:10.1016/j.media.2008.10.001
Thompson, S.A., Penney, G., Carter, T., Dasgupta, P., Hawkes, D. (2009). Accuracy Analysis of an Image Guided Robotic Urology Surgery System.
Thompson, S.A., Penney, G., Dasgupta, P., Hawkes, D. (2009). Image Guidance in Robot Assisted Prostatectomy.
Wheeler-Kingshott, C.A.M., Alexander, D.C., Cercignani, M. (2009). The relationship between "axial" and "radial" diffusivities and the eigenvectors of the diffusion tensor in the brain.
Wheeler-Kingshott, C.A.M., Alexander, D.C., Schneider, T., Cercignani, M. (2009). Measuring axial and radial diffusivities in the brain..
White, M.J., Hawkes, D.J., Melbourne, A., Collins, D.J., Coolens, C., Hawkins, M., ...Atkinson, D. (2009). Motion artefact correction in free-breathing abdominal MRI using overlappingpartial samples to recover image deformations. Magnetic Resonance in Medicine, 62 (2), 440-449. doi:10.1002/mrm.22017
Yogarajah, M., Focke, N., Bonelli, S., Parker, G., Alexander, D., Thompson, P., ...Duncan, J. (2009). TRACTOGRAPHY AND THE DISTRIBUTED NETWORK DAMAGE UNDERLYING MEMORY IMPAIRMENT IN TEMPORAL LOBE EPILEPSY.
Yogarajah, M., Focke, N., Bonelli, S., Parker, G.J.M., Alexander, D.C., Symms, M.R., ...Duncan, J.S. (2009). TRACTOGRAPHY OF THE OPTIC RADIATION IN PRESURGICAL TEMPORAL LOBE EPILEPSY PATIENTS.
Yogarajah, M., Focke, N., Bonelli, S., Parker, G.J.M., Alexander, D.C., Thompson, P., ...Duncan, J. (2009). A disproportionate role for the fornix in recall rather than recognition memory - tractography evidence in temporal lobe epilepsy.
Yogarajah, M., Focke, N., Cercignani, M., Acheson, J., Bonnelli, S., Parker, G., ...Koepp, M. (2009). TRACTOGRAPHY OF MEYER'S LOOP AND TEMPORAL LOBE RESECTION.
Yogarajah, M., Focke, N.K., Bonelli, S., Cercignani, M., Acheson, J., Parker, G.J., ...Koepp, M.J. (2009). Defining Meyer's loop-temporal lobe resections, visual field deficits and diffusion tensor tractography. Brain, 132 (6), 1656-1668. doi:10.1093/brain/awp114
Zacharopoulos, A.D., Svenmarker, P., Axelsson, J., Schweiger, M., Arridge, S.R., Andersson-Engels, S. (2009). A matrix-free algorithm for multiple wavelength fluorescence tomography. OPTICS EXPRESS, 17 (5), 3025-3035. doi:10.1364/OE.17.003025
Zacharopoulos, A., Schweiger, M., Kolehmainen, V., Arridge, S. (2009). 3D shape based reconstruction of experimental data in Diffuse Optical Tomography. OPTICS EXPRESS, 17 (21), 18940-18956. doi:10.1364/OE.17.018940
Zhuang, X., Hawkes, D.J., Ourselin, S. (2009). Unifying encoding of spatial information in mutual information for nonrigid registration.
Zhuang, X., Rhode, K., Razavi, R., Hawkes, D.J., Ourselin, S. (2009). Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation.

2008

Abascal, J.-.F.P.J., Arridge, S.R., Bayford, R.H., Holder, D.S. (2008). Comparison of methods for optimal choice of the regularization parameter for linear electrical impedance tomography of brain function. Physiological measurement, 29 (11), 1319-.
Abascal, J.P.J., Arridge, S.R., Atkinson, D., Horesh, R., Fabrizi, L., De Lucia, M., ...Holder, D.S. (2008). Use of anisotropic modelling in electrical impedance tomography; description of method and preliminary assessment of utility in imaging brain function in the adult human head. Neuroimage, 43 (2), 258-268.
Alexander, D.C. (2008). A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features.. Magnetic Resonance in Medicine, 60 439-448.
Arridge, S.R., Dorn, O., Kolehmainen, V., Schweiger, M., Zacharopoulos, A. (2008). Parameter and structure reconstruction in optical tomography.
Arridge, S.R., Kolehmainen, V., Schweiger, M. (2008). Reconstruction and Regularisation in Optical Tomography.
Arridge, S.R., Panagiotou, C., Schweiger, M., Kolehmainen, V. (2008). Multimodal Diffuse Optical Tomography : Theory. In Azar, F.S., Intes, X. (Eds.), Translational multimodality optical imaging. (pp. 101-124). Artech.
Atkinson, D., Hansen, M.S., Modat, M., Ourselin, S., Sørensen, T.S., Taylor, Z. (2008). Commodity Graphics Cards for Image Registration, Biomechanical Modelling and Cardiac Imaging.
Bai, Y., Alexander, D.C. (2008). Model-Based Registration to Correct for Motion between Acquisitions in Diffusion MR Imaging.
Barratt, D.C., Chan, C.S.K., Edwards, P.J., Penney, G.P., Slomczykowksy, M., Carter, T.J., Hawkes, D.J. (2008). Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging. Medical Image Analysis, 12 (3), 358-374. doi:10.1016/j.media.2007.12.006
Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S. (2008). Temporal propagation of spatial information in turbid media. OPTICS LETTERS, 33 (23), 2836-2838. doi:10.1364/OL.33.002836
Bassi, A., D'Andrea, C., Valentini, G., Cubeddu, R., Arridge, S.R. (2008). propagation of spatial information in turbid media. Optics Letters, 33 (23), 2836-2838.
Batchelor, P.G., Alexander, D.C. (2008). The Influence of Microscopic Shape Invariants in Diffusion MRI and on Time Correlations.
Brostow, G., Shotton, J., Fauqueur, J., Cipolla, R. (2008). Segmentation and Recognition using Structure from Motion Point Clouds.
Cahill, N.D., Schnabel, J.A., Noble, J.A., Hawkes, D.J. (2008). Revisiting Overlap Invariance in Medical Image Alignment.
Carter, T.J., Tanner, C., Barratt, D.C., Beechey-Newman, N., Hawkes, D.J. (2008). MR Navigated Breast Surgery: Method and Initial Clinical Experience.
Chandler, A.G., Pinder, R.J., Netsch, T., Schnabel, J.A., Hawkes, D.J., Hill, D.L.G., Razavi, R. (2008). Correction of misaligned slices in multi-slice cardiovascular magnetic resonance using slice-to-volume registration. JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE, 10 doi:10.1186/1532-429X-10-13
Chinchapatnam, P., Rhode, K.S., Ginks, M., Rinaldi, C.A., Lambiase, P., Razavi, R., ...Sermesant, M. (2008). Model-based imaging of cardiac apparent conductivity and local conduction velocity for diagnosis and planning of therapy. IEEE Trans Med Imaging.. IEEE Transactions on Medical Imaging, 27 (11), 1631-1642.
Chinchapatnam, P., Rhode, K.S., Ginks, M., Rinaldi, C.A., Lambiase, P., Razavi, R., ...Sermesant, M. (2008). Model-based imaging of cardiac apparent conductivity and local conduction velocity for diagnosis and planning of therapy.. IEEE TRANSACTIONS ON MEDICAL IMAGING, 27 (11), 1631-1642. doi:10.1109/TMI.2008.2004644
Colgan, R., McClelland, J., McQuaid, D., Evans, P.M., Hawkes, D., Brock, J., ...Webb, S. (2008). Planning lung radiotherapy using 4D CT data and a motion model. PHYSICS IN MEDICINE AND BIOLOGY, 53 (20), 5815-5830. doi:10.1088/0031-9155/53/20/017
Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Simultaneous estimation of chromophore concentration and scattering distributions from multiwavelength photoacoustic images.
Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Photoacoustic tomography using reverberant field data from a single detector.
Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Simultaneous Estimation of Chromophore Concentration and scattering distributions from multiwavelength photoacoustic images.
Cox, B.T., Arridge, S.R., Beard, P.C. (2008). Photoacoustic tomography using reverberant field data from a single detector.
Crosier, M., Griffin, L.D. (2008). Texture classification with a dictionary of basic image features.
Draganski, B., Kherif, F., Kloppel, S., Cook, P.A., Alexander, D.C., Parker, G.J., ...Frackowiak, R.S. (2008). Evidence for segregated and integrative connectivity patterns in the human Basal Ganglia. Journal of Neuroscience, 28 (28), 7143-7152. doi:10.1523/JNEUROSCI.1486-08.2008
Dyrby, T.B., Jelsing, J., Alexander, D.C., Sogaard, L.V. (2008). Acquiring optimal DWI data for tractography on post-mortem brain tissue.
Enfield, L.C., Gibson, A.P., Everdell, N.L., Hebden, J.C., Arridge, S.R., Sharma, A., ...Keshtger, M. (2008). Sensitivity and Specificity of 3-D Optical Mammography.
Figl, M., Rueckert, D., Hawkes, D., Casula, R., Hu, M., Pedro, O., ...Edwards, P. (2008). Image guidance for robotic minimally invasive coronary artery bypass.
Gao, G., Tarte, S., King, A., Ma, Y., Chinchapatnam, P., Schaeffter, T., ...Rhode, K. (2008). Validation of the use of photogrammetry to register preprocedure MR images to intra-procedure patient position for image-guided cardiac catheterization procedures - art. no. 69181Q.
Gibson, A.P., Enfield, L.C., Schweiger, M., Arridge, S.R., Douek, M., Hebden, J.C. (2008). 3D Optical mammography of the uncompressed breast.
Greenhalgh, R., Hu, Y., Barratt, D., Tolan, D., Taylor, S.A., Hawkes, D., Halligan, S. (2008). Can Us elastography help characterise anal sphincter pathology?.
Griffin, L.D. (2008). Detecting image symmetry using single linear filters.
Griffin, L.D. (2008). Symmetries of 1-D images. Journal of Mathematical Imaging and Vision, 31 (2-3), 157-164. doi:10.1007/s10851-008-0078-1
Griffin, L.D., Lillholm, M. (2008). Classifying local image symmetry using a co-localised family of linear filters. PERCEPTION, 37 122.
Hall, M.G., Alexander, D.C. (2008). Agreement and disagreement in two models of synthetic diffusion MR data.
Hall, M.G., Alexander, D.C. (2008). A hexagon is a circle.
Hall, M.G., Alexander, D.C. (2008). A tissue model of white matter undergoing tissue swelling.
Hansen, M.S., Atkinson, D., Sorensen, T.S. (2008). Cartesian SENSE and k-t SENSE reconstruction using commodity graphics hardware. Magn Reson.Med, 59 (3), 463-468. doi:10.1002/mrm.21523
Hansen, M.S., Atkinson, D., Sorensen, T.S. (2008). Interactive Adjustment of Regularization in SENSE and k-t SENSE using Commodity Graphics Hardware.
Hipwell, J., Tanner, C., Crum, W.R., Schnabel, J., Hawkes, D.J. (2008). A new validation method for validation of X-ray Mammogram Registration Algorithms using a Projection Model of Breast X-ray Compression. IEEE Transactions on Medical Imaging, 26 1190-1200. doi:10.1088/0031-9155/52/16/007
Hipwell, J., Tanner, C., Crum, W.R., Schnabel, J., Hawkes, D.J. (2008). A new validation method for validation of X-ray Mammogram Registration Algorithms using a Projection Model of Breast X-ray Compression. IEEE Transactions on Medical Imaging, 26 1190-1200. doi:10.1088/0031-9155/52/16/007
Hughes, S., McClelland, J., Chandler, A., Adams, M., Boutland, J., Withers, D., ...Hawkes, D. (2008). A comparison of internal target volume definition by limited four-dimensional computed tomography, the addition of patient-specific margins, or the addition of generic margins when planning radical radiotherapy for lymph node-positive non-small cell lung cancer. CLINICAL ONCOLOGY, 20 (4), 293-300. doi:10.1016/j.clon.2007.12.004
Hu, M., Penney, G., Rueckert, D., Edwards, P., Figl, M., Pratt, P., Hawkes, D. (2008). A novel algorithm for heart motion analysis based on geometric constraints.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2008, PT I, PROCEEDINGS, 5241 720-+.
Hu, M.X. (2008). Image Guidance for Robotic Minimally Invasive Coronary Artery Bypass.
Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D. (2008). A statistical motion model based on biomechanical simulations for data fusion during image-guided prostate interventions.
Hu, Y., Morgan, D., Ahmed, H.U., Pendse, D., Sahu, M., Allen, C., ...Barratt, D. (2008). Modelling prostate gland motion for image-guided interventions.
Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D. (2008). A statistical motion model based on biomechanical simulations for data fusion during image-guided prostate interventions..
Hu, Y., Morgan, D., Ahmed, H.U., Pendsé, D., Sahu, M., Allen, C., ...Barratt, D.C. (2008). Modelling Prostate Gland Motion for Image-Guided Interventions..
Kashani, R., Hub, M., Balter, J.M., Kessler, M.L., Dong, L., Zhang, L., ...Schnabel, J.A. (2008). Objective assessment of deformable image registration in radiotherapy: A multi-institution study. MEDICAL PHYSICS, 35 (12), 5944-5953. doi:10.1118/1.3013563
Kastanis, I., Arridge, S.R., Stewart, A., Gunn, S., Ullberg, C., Francke, T. (2008). 3D Digital Breast Tomosynthesis Using Total Variation Regularization..
King, A.P., Boubertakh, R., Ng, K.L., Ma, Y.L., Chinchapatnam, P., Gao, G., ...Rhode, K.S. (2008). A technique for respiratory motion correction in image guided cardiac catheterisation procedures.
Kloppel, S., Draganski, B., Golding, C.V., Chu, C., Nagy, Z., Cook, P.A., ...Parker, G.J. (2008). White matter connections reflect changes in voluntary-guided saccades in pre-symptomatic Huntington's disease. Brain, 131 (1), 196-204. doi:10.1093/brain/awm275
Lillholm, M., Griffin, L. (2008). Larger feature alphabets can improve object recognition even with simpler visual words. PERCEPTION, 37 33.
Lillholm, M., Griffin, L. (2008). Novel Image Feature Alphabets for Object Recognition.
Mang, A., Schnabel, J.A., Crum, W.R., Modat, M., Camara-Rey, O., Palm, C., ...Buzug, T.M. (2008). Consistency of parametric registration in serial MRI studies of brain tumor progression. International Journal of Computer Assisted Radiology and Surgery, 3 201---211.
McGinty, J., Tahir, K.B., Soloviev, V.Y., Laine, R., Sardini, A., Talbot, C.B., ...Hajnal, J.V. (2008). Time-Domain Fluorescence Lifetime Tomography.
Melbourne, A., Atkinson, D. (2008). Image Registration Method.
Melbourne, A., Atkinson, D., Hawkes, D.J. (2008). Influence of Organ Motion and Contrast Enhancement on Successful Registration.
Melbourne, A., Hawkes, D.J., Atkinson, D. (2008). Non-Rigid Registration of Diffusion Weighted MRI using Progressive Principal Component Registration.
Miyazaki, K., Collins, D.J., Koh, D.-.M., Atkinson, D., Hawkes, D.J., Leach, M.O. (2008). Evaluation of quantitative dynamic contrast enhanced pharmacokinetic parameters with and without postprocessing.
Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2008). Regularized Super-Resolution for Diffusion MRI.
Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2008). Regularized Super-Resolution for Diffusion MRI.
Nunes, R.G., Hajnal, J.V., Batchelor, P.G., Atkinson, D., Larkman, D.J. (2008). Continuously moving table acquisitions: Generalised Image Reconstruction Accounting For Field Effects (GIRAFFE).
Odille, F., Vuissoz, P.-.A., Felblinger, J., Atkinson, D. (2008). GENERALIZED RECONSTRUCTION BY INVERSION OF COUPLED SYSTEMS (GRICS) APPLIED TO PARALLEL MRI.
Orton, M.R., Collins, D.J., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Effect of Image Acquisition Protocol on Vascular Parameter Estimates from DCE-MRI Liver Data.
Orton, M.R., Collins, D.J., Walker-Samuel, S., d'Arcy, J.A., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Bayesian estimation of pharmacokinetic parametersfor DCE-MRI with a robust treatment of enhancement onset time. Physics in Medicine and Biology, 52 (9), 2393-2408. doi:10.1088/0031-9155/52/9/005
Orton, M.R., Collins, D.J., Walker-Samuel, S., d'Arcy, J.A., Hawkes, D.J., Atkinson, D., Leach, M.O. (2008). Bayesian estimation of pharmacokinetic parameters for DCE-MRI with a robust treatment of enhancement onset time.. Physics in Medicine and Biology, 52 (9), 2393-2408. doi:10.1088/0031-9155/52/9/005
Orton, M.R., d'Arcy, J.A., Collins, D.J., Atkinson, D., Hawkes, D.J., Leach, M.O. (2008). Portal Delay Estimation from DCE-MRI Liver Tissue Data: Feasibility and Effect on Vascular Parameter Estimates.
Orton, M.R., d'Arcy, J.A., Walker-Samuel, S., Hawkes, D.J., Atkinson, D., Collins, D.J., Leach, M.O. (2008). Computationally efficient vascular input function models for quantitative kinetic modelling using DCE-MRI. Physics in Medicine and Biology, 53 (5), 1225-1239. doi:10.1088/0031-9155/53/5/005
Orton, M.R., d'Arcy, J.A., Walker-Samuel, S., Hawkes, D.J., Atkinson, D., Collins, D.J., Leach, M.O. (2008). Computationally efficient vascular input function models for quantitative kinetic modelling using DCE-MRI.. Physics in medicine and biology, 53 (5), 1225-1239. doi:10.1088/0031-9155/53/5/005
Padormo, F., Nunes, R.G., Atkinson, D., Batchelor, P.G., Hajnal, J.V., Larkman, D.J. (2008). An Approach to Coil Calibration Based on Prior Training Data.
Palm, C., Penney, G.P., Crum, W.R., Schnabel, J.A., Pietrzyk, U., Hawkes, D.J. (2008). Fusion of rat brain histology and MRI using weighted multi-image mutual information.
Penney, G.P., Griffin, L.D., King, A.P., Hawkes, D.J. (2008). A novel framework for multi-modal intensity-based similarity measures based on internal similarity.
Phani Chinchapatnam, M.R.G., Maxime Sermesant, K.R., Simon Arridge, P.D.L., Julian Bostock, C.A.R., and, R.R. (2008). A Novel Electrophysiological Model Using Hybrid X-Ray/MRI and Non-Contact Mapping to Estimate Electrical Recruitability of Myocardial Tissue.
Porter, D.A., Atkinson, D., Scott, R., Clark, C.A. (2008). High-Resolution Diffusion Tensor Imaging Reveals Sub-Structure whithin Human Hippocampus in vivo.
Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Barker, G.J., ...Duncan, J.S. (2008). Imaging language pathways predicts postoperative naming deficits. Journal of Neurology, Neurosurgery and Psychiatry, 79 (3), 327-330. doi:10.1136/jnnp.2007.126078
Punwani, S., Robinson, C., Hawkes, D., Taylor, S.A., Halligan, S. (2008). Quantitative assessment of colonic movement between prone and supine patient positions during CTC.
Rhode, K., Ma, Y., Chandrasena, A., King, A., Gao, G., Chinchapatnam, P., ...Gill, J. (2008). Evaluation of the use of multimodality skin markers for the registration of pre-procedure cardiac MR images and intra-procedure x-ray fluoroscopy images for image guided cardiac electrophysiology procedures.
Schweiger, M., Dorn, O., Arridge, S.R. (2008). 3-D shape and contrast reconstruction in optical tomography with level sets.
Seunarine, K.K., Nedjati-Gilani, S., Hall, M.G., Cook, P.A., Alexander, D.C. (2008). Exploiting the fibre-orientation distribution for probabilistic tractography.
Shepherd, T., Alexander, D.C. (2008). Superviserd Methods for Perfect Segmentation in Medical Images.
Silberberg, Y.R., Pelling, A.E., Yakubov, G.E., Crum, W.R., Hawkes, D.J., Horton, M.A. (2008). Tracking displacements of intracellular organelles in response to nanomechanical forces.
Silberberg, Y.R., Pelling, A.E., Yakubov, G.E., Crum, W.R., Hawkes, D.J., Horton M, A. (2008). Mitochondrial displacements in response to nanomechanical forces. Journal of Molecular Recognition, 21 (1), 30-36. doi:10.1002/jmr.868
Silva, L.A.L., Campbell, J.A., Buxton, B.F. (2008). Folk Arguments, Numerical Taxonomy and Case-Based Reasoning.
Soloviev, V.Y., D'Andrea C, B.M., Valentini G, S., R B, C., R, A., S, R. (2008). Adjoint time domain method for fluorescent imaging in turbid media. Applied Optics, 47 (13), 2303-2311.
Soloviev, V.Y., D'Andrea, C., Brambilla, M., Valentini, G., Cubeddu, R., Schulz, R.B., Arridge, S.R. (2008). 3-D Fluorescence Imaging in Turbid Media by Using Time Gated Data Acquisition.
Sørensen, T.S., Atkinson, D., Boubertakh, R., Schaeffte, T., Hansen, M.S. (2008). Rapid non-Cartesian Parallel Imaging Reconstruction on Commodity Graphics Hardware.
Tarvainen, T., Vauhkonen, M., Arridge, S.R. (2008). Gauss-Newton reconstruction method for optical tomography using the finite-element solution of the radiative transfer equation. Journal of Quantitative Spectroscopy and Radiative Transfer, 109 (17-18), 2767-2778. doi:10.1016/j.jqsrt.2008.08.006
Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography. PIERS Online, 4 (6), 655-660. doi:10.2529/PIERS071219142458
Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography.
Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Kaipio, J.P., Arridge, S.R. (2008). Utilizing the radiative transfer equation in optical tomography.
Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2008). Modelling anisotropic viscoelasticity for real-time soft tissue simulation.
Thompson, S.A., Penney, G.P., Hawkes, D.J., Dasgupta, P. (2008). Bone segmentation using a CT based statistical shape model for image guidance in robot assisted prostatectomy.
Thompson, S., Penney, G., Buie, D., Dasgupta, P., Hawkes, D. (2008). Use of a CT statistical deformation model for multi-modal pelvic bone segmentation..
Thompson, S., Penney, G., Dasguipa, P., Hawkes, D. (2008). Image guidance in robot assisted radical prostatectomy. EUROPEAN UROLOGY SUPPLEMENTS, 7 (3), 104. doi:10.1016/S1569-9056(08)60134-7
Waechter, I., Barratt, D.C., Hawkes, D.J., Bredno, J., Weese, J. (2008). Quantifying blood flow division at bifurcations from rotational angiography.
Waechter, I., Bredno, J., Hermans, R., Barratt, D., Weese, J., Hawkes, D. (2008). Evaluation of model-based blood flow quantification from rotational angiography.
Waechter, I., Bredno, J., Hermans, R., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Model-based blood flow quantification from rotational angiography.. MEDICAL IMAGE ANALYSIS, 12 (5), 586-602. doi:10.1016/j.media.2008.06.003
Waechter, I., Bredno, J., Hermans, R., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Evaluation of model-based blood flow quantification from rotational angiography.
Waechter, I., Bredno, J., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Using flow information to support 3D vessel reconstruction from rotational angiography.. Medical physics, 35 (7Part1), 3302-3316. doi:10.1118/1.2938729
Waechter, I., Bredno, J., Weese, J., Barratt, D.C., Hawkes, D.J. (2008). Using flow information to support 3D vessel reconstruction from rotational angiography.. MEDICAL PHYSICS, 35 (7), 3302-3316. doi:10.1118/1.2938729
White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in free-breathing liver MRI.
White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in freebreathing.
White, M.J., Atkinson, D., Charles-Edwards, L., Coolens, C., Hawkins, M., Miyazaki, K., ...Hawkes, D.J. (2008). Image Deformation Recovery using Overlapping Partial Samples (iDROPS): model-based respiratory artefact correction in free-breathing liver MRI.
Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Thompson, P.J., Symms, M.R., ...Koepp, M.J. (2008). Tractography of the parahippocampal gyrus and material specific memory impairment in unilateral temporal lobe epilepsy. NeuroImage, 40 (4), 1755-1764. doi:10.1016/j.neuroimage.2007.12.046
Yogarajah, M., Yogarajah, M., Focke, N., Cercignani, M., Acheson, J., Bonelli, S.B., ...Koepp, M. (2008). TRACING MEYER'S LOOP: TEMPORAL LOBE RESECTION, VISUAL FIELD DEFICITS, AND TRACTOGRAPHY.
Zacharopoulos, A., Dorn, O., Arridge, S.R., Kolehmainen, V., Sikora, J. (2008). Reconstruction of simple geometric objects in 3D optical tomography using an adjoint technique and a boundary element method.
Zhuang, X., Hawkes, D.J., Crum, W.R., Boubertakh, R., Uribe, S., Atkinson, D., Batchelor, P. (2008). Robust registration between cardiac MRI images and atlas for segmentation propagation.
Zhuang, X., Hawkes, D.J., Crum, W.R., Boubertakh, R., Uribe, S., Atkinson, D., ...Hill, D.L.G. (2008). Robust registration between cardiac MRI images and atlas for segmentation propagation.
Zhuang, X., Rhode, K., Arridge, S., Razavi, R., Hill, D., Hawkes, D.J., Ourselin, S. (2008). An atlas-based segmentation propagation framework using locally affine registration – Application to automatic whole heart segmentation.
Zografos, V., Buxton, B.F. (2008). A Bayesian approach to 3D object recognition using linear combination of 2D views.

2007

Abascal, J.-.F.P.J., Arridge, S.R., Lionheart, W.R.B., Bayford, R.H., Holder, D.S. (2007). Validation of a finite-element solution for electrical impedance tomography in an anisotropic medium.
Abascal, J.-.F.P.J., Arridge, S.R., Lionheart, W.R.B., Bayford, R.H., Holder, D.S. (2007). Validation of a finite element solution for electrical impedance tomography in an anisotropic medium.
Alexander, D.C. (2007). Axon radius measurements in vivo from diffusion MRI: a feasibility study.
Alexander, D.C., Hall, M.G. (2007). Making the most of synthetic data: modelling vs simulation.
Alexander, D.C., Jiang, T., Westin, C.-.F. (2007). Special issue on computational diffusion MRI. IEEE TRANSACTIONS ON MEDICAL IMAGING, 26 (11), 1425-1427. doi:10.1109/TMI.2007.909944
Alexander, D.C., Jiang, T., Westin, C.F. (2007). Guest editorial special issue on computational diffusion MRI. IEEE Transactions on Medical Imaging, 26 (11), 1425-1426. doi:10.1109/TMI.2007.909944
Alexander, D.C., Jones, D.K. (2007). Limits on measuring axon diameters in vivo using diffusion MRI.
Atkinson, D., Batchelor, P.G., Clark, C. (2007). Track Ribbons - Visualising Structural Information in Diffusion Tensor Axial Asymmetry.
Batchelor, P., Atkinson, D., Schaeffter T, R., R. (2007). A fast Principal Direction Imaging method from Diffusion Weighted Images.
Blackall, J., McClelland, J., Tarte, S., Miguel, M., Uribe, S., Schaeffter, T., Hawkes, D. (2007). MR-based 4d models of respiratory motion variability for use in adaptive RT of the lung.
Cahill, N.D., Noble, J.A., Hawkes, D.J. (2007). Fourier methods for nonparametric image registration.
Cahill, N.D., Noble, J.A., Hawkes, D.J., Ray, L.A. (2007). Fast fluid registration with Dirichlet boundary conditions: A transform-based approach.
Chinchapatnam, P.P., Rhode, K.S., King, A., Gao, G., Ma, Y., Schaeffter, T., ...Arridge, S. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging.
Chinchapatnam, P., Rhode, K.S., King, A.P., Gao, G., Ma, Y., Schaeffter, T., ...Arridge, S.R. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging.
Cook, P.A., Boulby, P.A., Symms, M.R., Alexander, D.C. (2007). Optimal acquisition orders of diffusion-weighted MRI measurements. Journal of Magnetic Resonance Imaging, 25 (5), 1051-1058.
Corlu, A., Choe, R., Durduran, T., Rosen, M.A., Schweiger, M., Arridge, S.R., ...Yodh, A.G. (2007). Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans. Optics Express, 15 (11), 6696-6716.
Cox, B.T., Arridge, S.R., Beard, P.C. (2007). Gradient-based quantitative photoacoustic image reconstruction for molecular imaging.
Cox, B.T., Arridge, S.R., Beard, P.C. (2007). Photoacoustic tomography with a limited-aperture planar sensor and a reverberant cavity. Inverse Problems, 23 S95-S112. doi:10.1088/0266-5611/23/6/S08
Cox, B.T., Kara, S., Arridge, S.R., Beard, P.C. (2007). k-space propagation models for acoustically heterogeneous media: application to biomedical photoacoustics. Journal of the Acoustical Society of America, 121 (6), 3453-3464. doi:10.1121/1.2717409
Cox, B.T., S R Arridge, B., P, C. (2007). Gradient-Based Quantitative Photoacoustic Image Reconstruction for Molecular Imaging.
Crosier, M., Griffin, L.D. (2007). Zipf's law in image coding schemes.
Crosier, M., Griffin, L.D. (2007). Zipf's law distribution of local structure in natural images.
Crum, W.R., Camara, O., Hawkes, D.J. (2007). Methods for inverting dense displacement fields: evaluation in brain image registration.. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2007, PT 1, PROCEEDINGS, 4791 900-+.
Douiri, A., Schweiger, M., Riley, J., Arridge, S.R. (2007). Anisotropic diffusion regularization methods for diffuse optical tomography using edge prior information.
Dyrby, T.B., Sogaard, L.V., Parker, G.J.M., Alexander, D.C., Lind, N.M., Baare, W.F.C., ...Paulson, O.B. (2007). Validation of in vitro probabilistic tractography. NeuroImage, 37 (4), 1267-1277. doi:10.1016/j.neuroimage.2007.06.022
Elaloufi, R., Arridge, S., Pierrat, R., Carminati, R. (2007). Light propagation in multilayered scattering media beyond the diffusive regime. APPLIED OPTICS, 46 (13), 2528-2539. doi:10.1364/AO.46.002528
Enfield, L.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Schweiger, M., Arridge, S.R., ...Hebden, J.C. (2007). Three-dimensional time-resolved optical mammography of the uncompressed breast. Applied Optics, 46 (17), 3628-3638.
Fauqueur, J., Brostow, G.J., Cipolla, R. (2007). Assisted Video Object Labeling By Joint Tracking of Regions and Keypoints..
Griffin, L.D. (2007). The Second Order Local-Image-Structure Solid. IEEE Transactions on Pattern Analysis and Machine Intelligence, 29 (8), 1355-1366. doi:10.1109/TPAMI.2007.1066
Griffin, L.D., Lillholm, M. (2007). Feature category systems for 2nd order local image structure induced by natural image statistics and otherwise.
Griffin, L.D., Lillholm, M. (2007). Feature category systems for 2nd order local image structure induced by natural image statistics and otherwise.
Hall, M.G., Alexander, D.C. (2007). Covalidation of a Monte-Carlo and an analytical model of diffusion for synthetic diffusion-weighted MR data.
Hawkes, D.J., Penney, G.P., Atkinson, D., Barratt, D., Blackall, J., Carter, T., ...S, W. (2007). MOTION AND BIOMECHANICAL MODELS FOR IMAGE GUIDED INTERVENTIONS.
Hawkes, D., Nielsen, M. (2007). Untitled. MEDICAL IMAGE ANALYSIS, 11 (5), 415-416. doi:10.1016/j.media.2007.07.003
Hernandez, C., Vogiatzis, G., Brostow, G.J., Stenger, B., Cipolla, R. (2007). Non-rigid photometric stereo with colored lights.
Hipwell, J.H., Tanner, C., Crum, W.R., Schnabel, J.A., Hawkes, D.J. (2007). A new validation method for validation of x-ray mammogram registration algorithms using a projection model of breast x-ray compression. IEEE Transactions on Medical Imaging, 26 (7), 1190-1200.
Horesh, L., Bollhofer, M., Schweiger, M., Arridge, S.R., Holder, D.S. (2007). Novel Large-Scale 3D Electrical Impedance Tomography Modeling of the Human Head.
Horesh, L., Schweiger, M., Arridge, S.R., Holder, D.S. (2007). Large-Scale Non-Linear 3D Reconstruction Algorithms for Electrical Impedance Tomography of the Human Head.
Hulme, D.J., Hirsch, R., Buxton, B.F., Lotto, R.B. (2007). A new reduction from 3SAT to n-partite graphs.
Hu, M.X. (2007). 3D Reconstruction of Internal Organ Surfaces for Minimal Invasive Surgery.
Jiang, Q., Alexander, D.C., Ding, G.L., Zhang, Z.G., Pourabdollah, S., Nejad, D., ...Bagherebadian, H. (2007). White matter reorganization after stroke measured by Gaussian DTI, q-ball, and PAS MRI.
Johnson, M., Brostow, G.J., Shotton, J., Kwatra, V., Cipolla, R. (2007). Semantic photo synthesis.
Kashani, R., Baiter, J., Kessler, M., Hub, M., Dong, L., Zhang, L., ...Schnabel, J. (2007). Objective assessment of deformable image registration in radiotherapy - a multi-institution study.
Larsen, L., Griffin, L.D., Grassel, D., Witte, O.W., Axer, H. (2007). Polarized light imaging of white matter architecture. Microscopy Research and Technique, 70 (10), 851-863. doi:10.1002/jemt.20488
Lillholm, M., Griffin, L.D. (2007). Maximum likelihood metameres for local 2nd order image structure of natural images.
Loh, W.H., Laming, R.I., Atkinson, D., O'Reilly, J.J. (2007). Dispersion compensation in optical fibre transmission. WO09731435A1.
Mang, A., Camara, O., Brasil-Caseiras, G., Crum, W.R., Schnabel, J.A., Buzugl, T.M., ...Hawkes, D.J. (2007). Registration of RCBV and ADC maps with structural and physiological MR images in glioma patients: Study and validation.
Mang, A., Camara, O., Caseiras, G.B., Crum, W.R., Schnabel, J.A., Buzug, T.M., ...Hawkes, D.J. (2007). Image registration of structural and physiological MR images of abnormal anatomy.
Mang, A., Crum, W.R., Camara, O., Schnabel, J.A., Caseiras, G.B., Buzug, T.M., ...Hawkes, D.J. (2007). Modelling tumour growth patterns with non-rigid image registration.
McClelland, J., Blackall, J., Tarte, S., Hughes, S., Hawkes, D. (2007). Non-rigid registration based respiratory motion models of the lung using two parameters.
McClelland, J.R., Webb, S., McQuaid, D., Binnie, D.M., Hawkes, D.J. (2007). Tracking 'differential organ motion' with a 'breathing' multileaf collimator: magnitude of problem assessed using 4D CT data and a motion-compensation strategy. PHYSICS IN MEDICINE AND BIOLOGY, 52 (16), 4805-4826. doi:10.1088/0031-9155/52/16/007
Melbourne, A., Atkinson, D., White, M.J., Collins, M., Leach, M., Hawkes, D. (2007). Registration of dynamic contrast-enhanced MRI using a progressive principal component registration (PPCR). Physics in Medicine and Biology, 52 (17), 5147-5156. doi:10.1088/0031-9155/52/17/003
Melbourne, A., Atkinson, D., White, M.J., Hawkes, D.J., Collins, D., Leach, M. (2007). Contrast-enhancement simulation using principal components for registration of Dynamic Contrast-Enhanced MRI.
Melbourne, A., Atkinson, D., White, M.J., Hawkes, D.J., Collins, D., Leach, M. (2007). Using Registration to Quantify the Consistency of Whole Liver Position during Patient Breath-hold in Dynamic Contrast-Enhanced MRI.
Miyazaki, K., d'Arcy, J.A., Atkinson, D., Hawkes, D., Koh, D.-.M., Leach, M.O., Collins, D.J. (2007). Correcting Artifacts in High Temporal- and Spatial-Resolution Dynamic Abdominal Studies Using UNFOLD: A Potential Tool for Improving Perfusion Quantification of DCE-MR Investigations.
Nagy, Z., Weiskopf, N., Alexander, D.C., Deichmann, R. (2007). A method for improving the performance of gradient systems for diffusion-weighted MRI. Magnetic Resonance in Medicine, 58 (4), 763-768. doi:10.1002/mrm.21379
Nasrallah, A., Griffin, L.D. (2007). Gradient direction dependencies in natural images. Spatial Vision, 20 (3), 277-299.
Nedjati-Gilani, S., Parker, G.J., Alexander, D.C. (2007). Sub-voxel reconstruction of fibre orientations.
Nedjati-Gilani, S., Parker, G.J., Hall, M.G., Alexander, D.C. (2007). .
Nunes, R.G., Hajnal, J.V., Atkinson, D., Larkman, D.J. (2007). Can Relative Coil-Subject Motion During Acquisition Improve Parallel Imaging?.
Penney, G.P., Edwards, P.J., Hipwell, J.H., Slomczykowski, M., Revie, I., Hawkes, D.J. (2007). Postoperative calculation of acetabular cup position using 2-D-3-D registration. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 54 (7), 1342-1348. doi:10.1109/TBME.2007.890737
Pourabdollah-Nejad, S., Bagher-Ebadian, H., Jiang, Q., Noll, D.C., Alexander, D.C., Ewing, J.R., ...Chopp, M. (2007). Information extraction from ischemic stroke MR images using independent component analysis technique.
Powell, H.W., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Wheeler-Kingshott, C.A.M., ...Duncan, J.S. (2007). Abnormalities of language networks in temporal lobe epilepsy. NeuroImage, 36 (1), 209-221. doi:10.1016/j.neuroimage.2007.02.028
Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Wheeler-Kingshott, C.A.M., Boulby, P.A., ...Duncan, J.S. (2007). Abnormalities of language networks in temporal lobe epilepsy.
Prince, S., Arridge, S. (2007). Estimating spatial and temporal factors in optical diffusion tomography.
Robson, S., Buxton, B.F., Clark, A. (2007). Close Range Colour Artefact Scanning.
Schweiger, M., Nissila, I., Boas, D.A., Arridge, S.R. (2007). Image reconstruction in optical tomography in the presence of coupling errors. APPLIED OPTICS, 46 (14), 2743-2756. doi:10.1364/AO.46.002743
Senanayake, C.R., Alexander, D.C. (2007). Colour transfer by feature based histogram registration.
Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K., Parker, G.J., Alexander, D.C. (2007). Validation of generalised PICo tractography using bootstrap measurements.
Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton K, P., G J, A., D, C. (2007). Exploiting Peak anisotropy for tracking through complex structures.
Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K.V., Parker, G.J.M., Alexander, D.C. (2007). Exploiting peak anisotropy for tracking through fanning structures.
Seunarine, K.K., Cook, P.A., Hall, M.G., Embleton, K.V., Parker, G.J.M., Alexander, D.C. (2007). Exploiting peak anisotropy for tracking through complex structures.
Sharma, A., Enfield, L., Gibson, A.P., Everdell, N.L., Schweiger, M., Arridge, S., ...Sainsbury, R.S. (2007). Breast optical tomography: sensitivities and specificities for the detection of cancer..
Shepherd, T., Alexander, D.C. (2007). Supervised MS Lesion Segmentation.
Silva, L.A.L., Buxton, B.F., Campbell, J.A. (2007). Enhanced Case-Based Reasoning through Use of Argumentation and Numerical Taxonomy.
Soloviev, V.Y., McGinty, J., Tahir, K.B., Neil, M.A.A., Sardini, A., Hajnal, J.V., ...French, P.M.W. (2007). Fluorescence lifetime tomography of live cells expressing enhanced green fluorescent protein embedded in a scattering medium exhibiting background autofluorescence.. Optics Letters, 32 (14), 2034-2036. doi:10.1364/OL.32.002034
Soloviev, V.Y., Tahir, K.B., McGinty, J., Elson, D.S., Neil, M.A.A., French, P.M.W., Arridge, S.R. (2007). Fluorescence lifetime imaging by using time gated data acquisition.. Applied Optics, 46 (30), 7384-7391. doi:10.1364/AO.46.007384
Soloviev, V.Y., Tahir, K.B., McGinty, J., Elson, D.S., Nel, M.A.A., Sardini, A., ...French, P.M.W. (2007). Fluorescence lifetime imaging through turbid media reconstructed in the Fourier domain using time-gated imaging data..
Tanner, C., Schnabel, J.A., Degenhard, A., Hall-Craggs, M.A., Usiskin, S.I., Leach, M.O., ...Hawkes, D.J. (2007). Quantitative evaluation of free-form deformation registration for dynamic contrast-enhanced MR mammography.. Medical Physics, 34 (4), 1221-1233.
Waechter, I., Bredno, J., Barratt, D., Weese, J., Hawkes, D. (2007). Quantification of Blood Flow from Rotational Angiography.
Webb, S., McClelland, J., Hawkes, D., Binnie, D. (2007). Tracking "Differential Organ Motion" with a "Breathing" multileaf collimator: Magnitude of problem assessed using 4D CT data and a motion-compensation strategy.
White, M.J., Atkinson, D., Batchelor, P.G., Crum, W.R., Uribe, S., Schaeffter, T., ...Hawkes, D.J. (2007). Reducing Artefacts by Inverting the Effects of Non-Rigid Motion During a Free-Breathing Liver Scan.
White, M.J., Atkinson, D., Crum, W.R., Uribe, S., Schaeffler, T., Collins, D., ...Hawkes, D.J. (2007). Reducing artefacts by inverting the effects of non-rigid motion during a free-breathing liver scan.
Wright, S., Schweiger, M., Arridge, S.R. (2007). Reconstruction in optical tomography using the P-N approximations.
Xie, Y., Griffin, L.D. (2007). A 'portholes' experiment for probing perception of small patches of natural images.
Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P., ...Duncan, J.S. (2007). Reorganisation of medial temporal lobe connections in unilateral temporal lobe epilepsy.
Yogarajah, M., Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P., ...Duncan, J.S. (2007). Atrophy of medial temporal lobe connections in unilateral temporal lobe epilepsy: A tractography based study.
Yogarajah, M., Powell, R., Parker, G., Alexander, D., Symms, M., Boulby, P., ...Koepp, M. (2007). Tractography of the parahippocampal gyrus and material specific memory impairment in unilateral temporal lobe epilepsy.

2006

Ahmad, S., Tarte, S., Withers, D., Hawkes, D., Blackall, J., Landau, D., ...Adams, M. (2006). Comparison of patient-specific and generic internal target volume (ITV) margins for planning radical radiotherapy in lymph-node positive non-small cell lung cancer (NSCLC).
Alexander, D.C. (2006). An introduction to computational diffusion MRI: the diffusion tensor and beyond. In Weichert, J., Hagen, H. (Eds.), Visualization and image processing of tensor fields. (pp. 83-106). Berlin / Heidelberg: Springer.
Arridge, S., Dorn, O., Kaipio, J.P., Kolehmainen, V., Schweiger, M., Tarvainen, T., ...Zacharopoulos, A. (2006). Reconstruction of Subdomain Boundaries of Piecewise Constant Coefficients of the Radiative Transport Equation from Optical Tomography Data. Inverse Problems, 22 (6), 2175-2`98.
Arridge, S.R., Kaipio, J.P., Kolehmainen, V., Schweiger, M., Somersalo, E., Tarvainen, T., Vauhkonen, M. (2006). Approximation errors and model reduction with an application in optical diffusion tomography. Inverse Problems, 22 175-195. doi:10.1088/0266-5611/22/1/010
Atkinson, D. (2006). Special Applications of Parallel Imaging. In Schoenberg, S.O., Dietrich, O., Reiser, M.F. (Eds.), Parallel imaging in clinical MR applications. (pp. 63-70). Springer.
Atkinson, D. (2006). Incoherent Artefact Correction using PPI. NMR in Biomedicine, 19 (3), 362-367. doi:10.1002/nbm.1045
Atkinson, D., Counsell, S., Hajnal, J., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2006). Navigated Multi-Shot EPI Diffusion Imaging of the Spine.
Atkinson, D., Counsell, S., Hajnal, J., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2006). Navigated Multi-Shot EPI Diffusion Imaging of the Spine.
Atkinson, D., Counsell, S., Hajnal, J.V., Batchelor, P.G., Hill, D.L.G., Larkman, D.J. (2006). Nonlinear phase correction of navigated multi-coil diffusion images. Magnetic Resonance in Medicine, 56 (5), 1135-1139. doi:10.1002/mrm.21046
Austin, T., Gibson, A.P., Everdell, N.L., Schweiger, M., Arridge, S.R., Meek, J.H., ...Hebden, J.C. (2006). Optical imaging of the neonatal brain.
Austin, T., Hebden, J.C., Gibson, A.P., Branco, G., Yusof, R., Arridge, S.R., ...Wyatt, J.S. (2006). Three-dimensional optical imaging of blood volume and oxygenation in the preterm brain. Neuroimage, 31 (4), 1426-1433.
BAI, Y., Alexander, D. (2006). Correcting for Motion between Acquisitions in Diffusion MR Imaging.
Bai, Y., Cook, P.A., Zhang, H., Alexander, D.C. (2006). Motion Correction in Diffusion Magnetic Resonance.
Barratt, D.C., Penney, G.P., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2006). Self-Calibrating 3D-Ultrasound-Based Bone Registration for Minimally Invasive Orthopaedic Surgery. IEEE Transactions on Medical Imaging, 25 (3), 312-323. doi:10.1109/TMI.2005.862736
Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Ultrasound-based registration for minimally-invasive orthopaedic surgery.
Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Recent Developments in Ultrasound-based Bone Registration.
Barratt, D.C., Penney, G.P., Slomczykowski, M., Hawkes, D.J. (2006). Recent Developments in Ultrasound-based Bone Registration.
Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Advances in Fiber Tracking Quantification.
Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Advances in Fiber Tracking Quantification.
Batchelor, P., Calamante, F., Atkinson, D., Hill, D.L.G., Tournier, D., Connelly, A. (2006). Higher Order Tensor Analysis and Higher Order SVD for Diffusion Tensor Analysis.
Batchelor, P.G., Atkinson, D., Larkman, D.J., Hajnal, J., Hill, D.L.G., Irrarazaval, P., Hansen, M. (2006). A Sparse Matrix Formalism for Non-Rigid Motion Correction..
Batchelor, P.G., Atkinson, D., Larkman, D.J., Hajnal, J.V. (2006). Corrections and reconstruction via conjugate gradientmethods, comparison of matrix and functional methods.
Batchelor, P.G., Calamante, F., Tournier, J.-.D., Atkinson, D., Hill, D.L., Connelly, A. (2006). Quantification of the shape of fiber tracts. MAGN RESON MED, 55 (4), 894-903. doi:10.1002/mrm.20858
Blackall, J., Ahmad, S., Miquel, M., McClelland, J., Landau, D., Hawkes, D. (2006). MRI-Based Measurements of Respiratory Motion Variability and Assessment of Imaging Strategies for Radiotherapy Planning. Physics in Medicine and Biology, 51 (17), 4147-4169.
Blackall, J.M., Ahmad, S., Miquel, M.E., McClelland, J.R., Landau, D.B., Hawkes, D.J. (2006). MRI-based measurements of respiratory motion variability and assessment of imaging strategies for radiotherapy planning. PHYSICS IN MEDICINE AND BIOLOGY, 51 (17), 4147-4169. doi:10.1088/0031-9155/51/17/003
Brostow, G.J., Cipolla, R. (2006). Unsupervised Bayesian Detection of Independent Motion in Crowds..
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Hebden, J.C., Yates, T.D., Gibson, A., Everdell, N., Arridge, S.R., Chicken, D.W., ...Keshtgar, M.R.S. (2005). Monitoring recovery after laser surgery of the breast with optical tomography: a case study. Applied Optics, 44 (10), 1898-1904.
Hill, D.L., McLeish, K., Keevil, S.F. (2005). Impact of electromagnetic field exposure limits in Europe: is the future of interventional MRI safe?. ACAD RADIOL, 12 (076-6332 (Print), 9), 1135-1142.
Hu, S., Buxton, B.F. (2005). “Using an Avatar to Develop a System for the Predication of Human Body Pose from Moments”.
Hu, S., Mortensen, J., Buxton, B.F. (2005). A Real-Time Tracking System Developed for an Interactive Stage Performance.
Keevil, S.F., Gedroyc, W., Gowland, P., Hill, D.L., Leach, M.O., Ludman, C.N., ...Young, I.R. (2005). Electromagnetic field exposure limitation and the future of MRI. BR J RADIOL, 78 (007-1285 (Print), 935), 973-.
Leung, K.K., Holden, M., Saeed, N., Brooks, K., Buckton, J., Williams, A., ...Rueckert, D. (2005). Automated quantitative analysis of rheumatoid arthritis lesions in MRI.
Manzke, R., Koken, P., Hawkes, D., Grass, M. (2005). Helical cardiac cone beam CT reconstruction with large area detectors: a simulation study.. Physics in Medicine and Biology, 50 (7), 1547-1568.
McClelland, J., Blackall, J., Hughes, S., Ahmad, S., Landau, D., Hawkes, D. (2005). 4D models of respiratory motion for use in RT planning and their advantages over 4DCT techniques.
McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Noble, J.A., Byrne, J.V., Cox, T.C. (2005). A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use. IEEE TRANSACTIONS ON MEDICAL IMAGING, 24 (8), 1058-1066. doi:10.1109/TMI.2005.852067
McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Noble, J.A., Byrne, J.V., Cox, T.C. (2005). A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use. IEEE TRANS MED IMAGING, 24 (278-0062 (Print), 8), 1058-1066.
Muthurangu, V., Atkinson, D., Sermesant, M., Miquel, M.E., Hegde, S., Johnson, R., ...Tulloh, R. (2005). Measurement of total pulmonary arterial compliance using invasive pressure monitoring and MR flow quantification during MR-guided cardiac catheterization. American Journal of Physiology - Heart and Circulatory Physiology, 289 (3), H1301-H1306. doi:10.1152/ajpheart.00957.2004
Muthurangu, V., Sermesant, M., Atkinson, D., Hill, D.L.G., Razavi, R.S. (2005). A novel method of measuring PVR and total pulmonary arterial compliance using simultaneous pressure monitoring and phase contrast MR flow quantification.
Nahmias, J.D., Steed, A., Buxton, B. (2005). Analysis of cost functions and structured light patterns for modern dynamic programming stereo algorithms.
Nahmias, J.D., Steed, A., Buxton, B. (2005). Evaluation of Modern Dynamic Programming Algorithms for Real-time Active Stereo Systems.
Nasrallah, A., Griffin, L. (2005). Multi-local statistics of gradient directions in natural images. SPATIAL VISION, 18 (4), 503-504.
Nedjati-Gilani, S., Cook, P.A., Parker, G.J., Alexander, D.C. (2005). Voxel-Based Classification of White Matter Fibre Complexity in Diffusion MRI.
Nedjati-Gilani, S., Cook, P.A., Parker, G.J.M., Alexander, D.C. (2005). .
Nijmeh, A.D., Goodger, N.M., Hawkes, D., Edwards, P.J., McGurk, M. (2005). Image-guided navigation in oral and maxillofacial surgery.. The British journal of oral & maxillofacial surgery, 43 (4), 294-302. doi:10.1016/j.bjoms.2004.11.018
Nissila, I., Noponen, T., Kotilahti, K., Katila, T., Lipiainen, L., Tarvainen, T., ...Arridge, S. (2005). Instrumentation and calibration methods for the multichannel measurement of phase and amplitude in optical tomography. REVIEW OF SCIENTIFIC INSTRUMENTS, 76 (4), doi:10.1063/1.1884193
Panalkis, N., McClelland, J., Chandler, A., Blackall, J., Ahmad, S., Hughes, S., ...Brada, M. (2005). Intrafractional movement of the oesophagus in patients with Non-Small Cell Lung Cancer (NSCLC). EJC SUPPLEMENTS, 3 (2), 339-340.
Parker, G.J., Luzzi, S., Alexander, D.C., Wheeler-Kingshott, C.A., Ciccarelli, O., Lambon Ralph, M.A. (2005). Lateralization of ventral and dorsal auditory-language pathways in the human brain. NeuroImage, 24 (3), 656-666.
Parker, G.J.M., Alexander, D.C. (2005). Probabilistic Anatomical Connectivity Derived from the Microscopic Persistent Angular Structure of Cerebral Tissue.
Parker, G.J.M., Alexander, D.C. (2005). Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue. Philosophical Transactions of the Royal Society B: Biological Sciences, 360 (1457), 893-902. doi:10.1098/rstb.2005.1639
Penney, G.P., Barratt, D.C., Chan, C.S.K., Slomczykowski, M., Carter, T.J., Edwards, P.J., Hawkes, D.J. (2005). Cadaver validation of intensity-based ultrasound-to-CT registration.
Powell, H.W., Parker, G.J., Alexander, D.C., Symms, M.R., Boulby, P.A., Wheeler-Kingshott, C.A., ...Duncan, J.S. (2005). MR tractography predicts visual field defects following temporal lobe resection. Neurology, 65 (4), 596-599.
Powell, H.W.R., Parker, G.J.M., Alexander, D.C., Symms, M.R., Boulby, P.A., Barker, G.J., ...Duncan, J.S. (2005). MR-Tractography predicts visual field defects following temporal lobe resection.
Prieto, C., Guarini, M., Hill, D.L.G., Boubertakh, R.B., Batchelor, P.G., Hajnal, J., Irrarazaval, P. (2005). Under-Sampled Dynamic Data Reconstruction Based on Object Motion Estimation.
Rhode, K.S., Lambrou, T., Hawkes, D.J., Seifalian, A.M. (2005). Novel approaches to the measurement of arterial blood flow from dynamic digital X-ray images. IEEE TRANS MED IMAGING, 24 (278-0062 (Print), 4), 500-513.
Ruto, A., Buxton, B.F. (2005). Application of a robust and efficient ICP algorithm for fitting a deformable 3D human torso model to noisy data.
Schweiger, M., Camara-Rey, O., Crum, W.R., Lewis, E., Schnabel, J., Arridge, S.R., ...Fox, N. (2005). An inverse problem approach to the estimation of volume change.
Spanlang, B., Vassilev, T.I., Walters, J., Buxton, B.F. (2005). A Virtual Clothing System for Retail and Design. Research Journal of Textile and Apparel, 9 (1), 74-87.
Tarvainen, T., Kolehmainen, V., Vauhkonen, M., Vanne, A., Gibson, A.P., Schweiger, M., ...Kaipio, J.P. (2005). Computational calibration method for optical tomography. Applied Optics, 44 (10), 1879-1888.
Tarvainen, T., Vauhkonen, M., Kolehmainen, V., Arridge, S.R., Kaipio, J.P. (2005). Coupled radiative transfer equation and diffusion approximation model for photon migration in turbid medium with low-scattering and non-scattering regions,. Physics in Medicine and Biology, 50 4913-4930.
Wilczkowiak, M., Brostow, G.J., Tordoff, B., Cipolla, R. (2005). Hole Filling Through Photomontage.
Yates, T.D., Hebden, J.C., Gibson, A.P., Enfield, L., Everdell, N.L., Arridge, S.R., Delpy, D.T. (2005). Time-resolved optical mammography using a liquid coupled interface. Journal of Biomedical Optics, 10 054011-.
Yates, T.D., Hebden, J.C., Gibson, A.P., Everdell, N.L., Arridge, S.R., Douek, M. (2005). Optical tomography of the breast using a multi-channel time-resolved imager. Physics in Medicine and Biology, 50 2503-2517. doi:10.1088/0031-9155/50/11/005
Zografos, V., Buxton, B.F. (2005). Affine Invariant, Model-Based Object Recognition Using Robust Metrics and Bayesian Statistics.

2004

Alexander, D.C. (2004). A comparison of q-ball and PASMRI on sparse diffusion MRI data.
Arridge, S.R. (2004). Time domain optical tomography.
Atkinson, D., Hajnal, J.V., Larkman, D.J., Batchelor, P.G., Hill, D.L.G. (2004). Parallel MRI for Regridding Multi-Shot Diffusion Data.
Atkinson, D., Larkman, D., Batchelor, P.G., Hajnal, J., Hill, D.L.G. (2004). CARE: Coil-based Artifact Reduction.
Atkinson, D., Larkman, D., Batchelor, P.G., Hajnal, J., Hill, D.L.G. (2004). Multiple Coils for Reduction of Flow Artefacts in MR Images.
Atkinson, D., Larkman, D.J., Batchelor, P.G., Hill, D.L., Hajnal, J.V. (2004). Coil-based artifact reduction. Magnetic Resonance in Medicine, 52 (4), 825-830. doi:10.1002/mrm.20226
Austin, T., Hebden, J.C., Gibson, A., Yusof, R.M., Arridge, S.R., Meek, J.H., ...Wyatt, J.S. (2004). Optical imaging of the neonatal brain.
Baltes, C., Kozerke, S., Atkinson, D., Boesiger, P. (2004). Restrospective Respiratory Motion Correction for Navigated Cine Velocity Mapping. Journal of Cardiovascular Magnetic Resonance, 6 (4), 785-792. doi:10.1081/JCMR-200036119
Batchelor, P.G., Atkinson, D., Hajnal, J., Larkman, D., Hill, D.L.G. (2004). Parallel Imaging and MR Motion Correction.
Batchelor, P.G., Atkinson, D., Hill, D.L.G., Larkman, D.J., Hajnal, J.V. (2004). A Matrix Framework for MR Motion Correction.
Batchelor, P.G., Atkinson, D., Larkman, D., Hajnal, J., Hill, D.L.G. (2004). Fitting Coil and Data in Parallel Imaging.
Batchelor, P.G., Calamante, F., Atkinson, D., Tournier, D., Connelly, A., Hill, D.L.G. (2004). Classification of Fibre Tracts Using Differential Geometry.
Brostow, G.J., Essa, I., Steedly, D., Kwatra, V. (2004). Novel skeletal representation for articulated creatures.
Byrne, J.V., Colominas, C., Hipwell, J., Cox, T., Noble, J.A., Penney, G.P., Hawkes, D.J. (2004). Assessment of a technique for 2D-3D registration of cerebral intra-arterial angiography. BRITISH JOURNAL OF RADIOLOGY, 77 (914), 123-128. doi:10.1259/bjr/27339681
Byrne, J.V., Colominas, C., Hipwell, J., Cox, T., Noble, J.A., Penney, G.P., Hawkes, D.J. (2004). Assessment of a technique for 2D-3D registration of cerebral intra-arterial angiography. BR J RADIOL, 77 (007-1285 (Print), 914), 123-128.
Chan, C.S.K., Barratt, D.C., Edwards, P.J., Slomczykowski, M., Carter, T.J., Hawkes, D.J. (2004). Cadaver validation of the use of ultrasound for the instantiation of bony anatomy in image-guided orthopaedic surgery.
Chan, C.S.K., Edwards, P.J., Barratt, D.C., Slomczykowski, M., Hawkes, D.J. (2004). Ultrasound-based reconstruction and registration of 3D bone anatomy using statistical shape.
Chandler, A.G., Schnabel, J.A., Hawkes, D.J., Netsch, T., Cocosco, C.A. (2004). Slice-to-volume registration using mutual information between probabilistic image classifications.
Chatten, A.J., Barnham, K.W.J., Buxton, B.F., Ekins-Daukes, N.J., Malik, M.A. (2004). Quantum dot solar concentrators.
Cook, P.A., Alexander, D.C., Parker, G.J.M. (2004). Modelling noise-induced fibre-orientation error in diffusion-tensor MRI..
Cook, P.A., Alexander, D.C., Parker, G.J.M. (2004). Modelling noise-induced fibre-orientation error..
Corney, D.P.A., Buxton, B.F., Langdon, W.B., Jones, D.T. (2004). BioRAT: extracting biological information from full-length papers. Bioinformatics, 20 (17), 3206-3213.
Coulon, O.P., Alexander, D.C., Arridge, S.R. (2004). A regulatization scheme for coupled direction and magnitude information: application to 3D diffusion tensor magnetic resonance images. Medical image analysis, 8 (1), 27-47. doi:10.1016/j.media.2003.06.002
Crum, W.R., Hartkens, T., Hill, D.L. (2004). Non-rigid image registration: theory and practice. BR J RADIOL, 77 Spec No 2 (007-1285 (Print)), S140-S153. doi:10.1259/bjr/25329214
Curran, K.M., Alexander, D.C. (2004). Orientation coherence optimization in tensor image registration..
de Cunha, D.A., EADIE, L., Adams, B., Hawkes, D.J. (2004). Medical ultrasound image similarity measurement by human visual system (HVS) modelling.
de Cunha, D.A., Eadie, L.H., Barbur, J.L., Hawkes, D.J., Seifalian, A.M. (2004). The effect of image colour distortion on evaluation of donor liver suitability for transplantation. COMPUT BIOL MED, 34 (010-4825 (Print), 7), 615-632.
Dias, M.B., Buxton, B.F. (2004). Separating shape and pose variations. Image and Vision Computing, 22 (10), 851-861.
Edwards, P.J., Johnson, L.G., Hawkes, D.J., Fenlon, M.R., Strong, A.J., Gleeson, M.J. (2004). Clinical experience and perception in stereo augmented reality surgical navigation.
Griffin, L.D. (2004). Wherefore the basic colour terms?. Perception, 33 (6), 6-.
Griffin, L.D. (2004). Optimality of the basic colour categories.
Griffin, L.D., Lillholm, M., Nielsen, M. (2004). Natural image profiles are most likely to be step edges. Vision Research, 44 (4), 407-421. doi:10.1016/j.visres.2003.09.025
Hammond, P., Hutton, T.J., Allanson, J., Buxton, B., Campbell, L., Karmiloff-Smith, A., ...Smith, A. (2004). RP404.
Hammond, P., Hutton, T.J., Allanson, J., Buxton, B., Karmiloff-Smith, A., Patton, M., ...Tassabehji, M. (2004). 3D dense surface models identify the most discriminating facial features in dysmorphic syndromes.
Hebden, J.C., Gibson, A., Austin, T., Yusof, R., Everdell, N., Delpy, D.T., ...Wyatt, J.S. (2004). Imaging changes in blood volume and oxygenation in the newborn infant brain using three-dimensional optical tomography. Physics in Medicine and Biology, 49 (7), 1117-1130. doi:10.1088/0031-9155/49/7/003
Hill, D.L. (2004). Ten years of preimplantation genetic diagnosis-aneuploidy screening: review of a multicenter report. FERTIL STERIL, 82 (015-0282 (Print), 2), 300-301.
Holden, M., Griffin, L.D., Saeed, N., Hill, D.L.G. (2004). Multi-channel mutual information using scale space.
Holden, M., Griffin, L.D., Saeed, N., Hill, D.L.G.H. (2004). Multi-channel mutual information using scale space, in Medical Image Computing and Computer-Assisted Intervention.
Johnson, L.G., Edwards, P.J., Griffin, L.D., Hawkes, D.J. (2004). Depth perception of stereo overlays in image-guided surgery. Medical Imaging 2004: Image Perception, Observer Performance, and Technology Assessment, 263-272.
Kastanis, I., Arridge, S.R., Silver, A.M.S., Hill, D.L., Ravazi, R. (2004). Reconstruction of the heart boundary from undersampled cardiac MRI using Fourier shape descriptors and local basis functions.
Kozerke, S., Hegde, S., Schaeffter, T., Lamerichs, R., Razavi, R., Hill, D.L. (2004). Catheter tracking and visualization using 19F nuclear magnetic resonance. Magnetic Resonance in Medicine, 52 (3), 693-697. doi:10.1002/mrm.20202
Langdon, W.B., Buxton, B.F. (2004). Genetic programming for mining DNA chip data from cancer patients. Genetic Programming and Evolvable Machines, 5 (3), 251-257.
Larkman, D.J., Atkinson, D., Hajnal, J.V. (2004). Artifact reduction using parallel imaging methods. Topics in Magnetic Resonance Imaging, 15 (4), 267-275. doi:10.1097/01.rmr.0000143782.39690.8a
Larsen, L., Griffin, L.D. (2004). Can a continuity heuristic be used to resolve the inclination ambiguity of polarized light imaging?.
Manzke, R., Grass, M., Hawkes, D. (2004). Artifact analysis and reconstruction improvement in helical cardiac cone beam CT.. IEEE Transactions on Medical Imaging, 23 (9), 1150-1164. doi:10.1109/TMI.2004.830804
Manzke, R., Kohler, T., Nielsen, T., Hawkes, D., Grass, M. (2004). Automatic phase determination for retrospectively gated cardiac CT.. Medical Physics, 31 (12), 3345-3362.
McLeish, K., Kozerke, S., Crum, W.R., Hill, D.L. (2004). Free-breathing radial acquisitions of the heart. Magnetic Resonance in Medicine, 52 (5), 1127-1135. doi:10.1002/mrm.20252
Miquel, M.E., Hegde, S., Muthurangu, V., Corcoran, B.J., Keevil, S.F., Hill, D.L., Razavi, R.S. (2004). Visualization and tracking of an inflatable balloon catheter using SSFP in a flow phantom and in the heart and great vessels of patients. MAGN RESON MED, 51 (740-3194 (Print), 5), 988-995.
Muthurangu, V., Taylor, A., Andriantsimiavona, R., Hegde, S., Miquel, M.E., Tulloh, R., ...Razavi, R.S. (2004). Novel method of quantifying pulmonary vascular resistance by use of simultaneous invasive pressure monitoring and phase-contrast magnetic resonance flow. Circulation, 110 (7), 826-834. doi:10.1161/01.CIR.0000138741.72946.84
O'Gorman, R.L., Selway, R.P., Reid, C.J., Hotton, G.R., Hall, E., Jarosz, J.M., ...Hill, D.L. (2004). Registered computed tomography images as an alternative to postimplantation magnetic resonance imaging in the assessment of subthalamic electrode placement. J COMPUT ASSIST TOMOGR, 28 (363-8715 (Print), 4), 548-550.
Parker, G.J.M., Luzzi, S., Lambon-Ralph, M.A., Wheeler-Kingshott, C.A.M., Ciccarelli, O., Alexander, D.C. (2004). Lateralisation of connective pathways between language centres demonstrated using group analysis of fibre tracking incorporating crossing fibre information.
Penney, G.P., Blackall, J.M., Hamady, M.S., Sabharwal, T., Adam, A., Hawkes, D.J. (2004). Registration of freehand 3D ultrasound and magnetic resonance liver images. Medical Image Analysis, 8 (1), 81-91. doi:10.1016/j.media.2003.07.003
Penney, G.P., Schnabel, J.A., Rueckert, D., Hawkes, D.J., Niessen, W.J. (2004). Registration-Based Interpolation Using a High-Resolution Image for Guidance..
Schnabel, J.A., Batchelor, P.G., Tanner, C., Quist, M., Gerritsen, F.A., Hawkes, D.J. (2004). Modelling tissue deformations using free-form modes of vibration.
Spanlang, B., Vassilev, T., Buxton, B.F. (2004). Compositing Photographs with Virtual Clothes for Design.
Tanner, C., Khazen, M., Kessar, P., Leach, M.O., Hawkes, D.J. (2004). Classification Improvement by Segmentation Refinement: Application to Contrast-Enhanced MR-Mammography.
Vilhunen, T., Kohlehmainen, V., Vauhkonen, M., Vanne, A., Gibson, A.P., Schweiger, M., ...Kaipio, J.P. (2004). Computational calibration method for optical tomography.
Ward, J.J., McGuffin, L.J., Bryson, K., Buxton, B.F., Jones, D.T. (2004). The DISOPRED server for the prediction of protein disorder.. Bioinformatics, 20 (13), 2138-2139.
Ward, J.J., Sodhi, J.S., McGuffin, L.J., Buxton, B.F., Jones, D.T. (2004). Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. Journal of Molecular Biology, 337 (3), 635-645. doi:10.1016/j.jmb.2004.02.002
Yates, T.D., Hebden, J.C., Gibson, A.P., Everdell, N.L., Delpy, D.T., Arridge, S.R., ...Chicken, W. (2004). Clinical results from a 32-channel time resolved system used to image the breast.

2003

Atkinson, D., Batchelor, P.G., Larkman, D.J., Hill, D.L.G., Hajnal, J.V. (2003). Generalised Motion Correction in Parallel Imaging.
Atkinson, D., Hill, D.L.G. (2003). Reconstruction after Rotational Motion. Magnetic Resonance in Medicine, 49 (1), 183-187. doi:10.1002/mrm.10333
Atkinson, D., Kozerke, S., Razavi, R. (2003). Retrospective Image Correction Combined with Slice Tracking for Respiratory Motion Compensation. Journal of Cardiovascular Magnetic Resonance, 5 (1), 270-271.
Batchelor, P.G., Atkinson, D., Hill, D.L., Calamante, F., Connelly, A. (2003). Anisotropic noise propagation in diffusion tensor MRI sampling schemes. MAGN RESON MED, 49 (6), 1143-1151.
Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2003). Icosahedral, direction encoding of the diffusion tensor propagages noise isotropically .. Magnetic Resonance in Medicine, 49 (6), 1143-1151.
Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2003). The Effect on DT-MRI of Increased Number of Directions: Further Advances on Icosahedral Schemes.
Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2003). Anisotropic noise propagation in diffusion tensor MRI sampling schemes. MAGN RESON MED, 49 (6), 1143-1151.
Batchelor, P.G., Calamante, F., Atkinson, D., Hill, D.L.G., Blyth, R., Connelly, A. (2003). Classification of bundles of white matter tract from DTI without registration.
Batchelor, P.G., Calamante, F., Atkinson, D., Hill, D.L.G., Blyth, R., Connelly, A. (2003). Classification of White Matter Tract Shapes from DTI Without Registration.
Blyth, R., Cook, P.A., Alexander, D.C. (2003). Tractography with multiple fibre directions.
Buxton, B., Dias, M.B. (2003). .
Buxton, B.F., Dias, M.B. (2003). The Principles of View Invariant, Image-Based Linear Flexible Shape Modelling.
Bydder, M., Atkinson, D., Larkman, D.J., Hill, D.L., Hajnal, J.V. (2003). SMASH navigators. Magnetic Resonance in Medicine, 49 (3), 493-500. doi:10.1002/mrm.10388
Chatten, A.J., Barnham, K.W.J., Buxton, B.F., Ekins-Daukes, N.J., Malik, M.A. (2003). A new approach to modelling quantum dot concentrators. SOLAR ENERGY MATERIALS AND SOLAR CELLS, 75 (3-4), 363-371. doi:10.1016/S0927-0248(02)00182-4
Cook, P.A., Alexander, D.C. (2003). Inter-subject comparison of brain connectivity using diffusion tensor magnetic resonance imaging.
Corlu, A., Durduran, T., Choe, R., Schweiger, M., Hillman, E.M.C., Arridge, S.R., Yodh, A.G. (2003). Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography. OPTICS LETTERS, 28 (23), 2339-2341. doi:10.1364/OL.28.002339
Corney, D.P.A., Buxton, B.F., Langdon, W.B., Charlwood, J., Woolard, P.M., Jones, D.T. (2003). Extracting Biological Information from Full-length Papers. .
Coulon, O.P., Alexander, D.C., Arridge, S.R. (2003). Regularisation d'images de tenseurs de diffusion par resonance magnetique.
Crum, W.R., Griffin, L.D., Hill, D.L., Hawkes, D.J. (2003). Zen and the art of medical image registration: correspondence, homology, and quality. NEUROIMAGE, 20 (053-8119 (Print), 3), 1425-1437. doi:10.1016/j.neuroimage.2003.07.014
Crum, W.R., Hill, D.L., Hawkes, D.J. (2003). Information theoretic similarity measures in non-rigid registration. INF PROCESS MED IMAGING, 18 (011-2499 (Print)), 378-387.
Curran, K.M., Alexander, D.C. (2003). Orientation matching for registration of diffusion tensor images.
Curran, K.M., Alexander, D.C. (2003). Diffusion tensor orientation matching for image registration. Proceedings of SPIE - The International Society for Optical Engineering, 5032 I 149-156. doi:10.1117/12.481130
Dias, M.B., Buxton, B. (2003). Exploring the Possibility of Estimating Bas-Relief angles, Illumination Direction and Surface Texture from Multiple Images. .
Dias, M.B., Buxton, B.F. (2003). Advances in Integrated Shape and Pose Modelling. .
Dias, M.B., Buxton, B.F. (2003). Estimating Bas-Relief angles, Illumination Direction and Surface Texture.
Dias, M.B., Buxton, B.F. (2003). Enforcing a Shape Correspondence Between Two Views of a 3D Non-Rigid Object.
Dias, M.B., Buxton, B.F. (2003). Separating Shape And Pose Variations. .
Duda, J., Rivera, M., Alexander, D.C., Gee, J.C. (2003). Optical flow based method for non-rigid registration of diffusion tensor magnetic resonance images.
Duda, J.T., Rivera, M., Alexander, D.C., Gee, J.C. (2003). A method for non-rigid registration of diffusion tensor magnetic resonance images. Proceedings of SPIE - The International Society for Optical Engineering, 5032 II 1186-1196. doi:10.1117/12.481155
Gibson, A.P., Riley, J., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2003). A Method for Generating Patient-Specific Finite Element Meshes for Head Modelling. Physics in Medicine and Biology, (48), 481-495. doi:10.1088/0031-9155/48/4/305
Gibson, A., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2003). A method for generating patient-specific finite element meshes for head modelling.
Gibson, A., Yusof, R.M., Dehghani, H., Riley, J., Everdell, N., Richards, R., ...Delpy, D.T. (2003). Optical tomography of a realistic neonatal head phantom.
Gibson, A., Yusof, R.M., Dehghani, H., Riley, J., Everdell, N., Richards, R., ...Delpy, D.T. (2003). Optical tomography of a realistic neonatal head phantom. Applied Optics, 42 (16), 3019-3116.
Griffin, L.D. (2003). Preface. .
Griffin, L.D., Lillholm, M. (2003). Mode estimation using pessimistic scale space tracking. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2695 266-280.
Griffin, L.D., Lillholm, M. (2003). Mode estimation by pessimistic scale space tracking. In Griffin, L.D., Lillholm, M. (Eds.), Proc. Scale Space '03, LNCS vol. 2695. (pp. 271-286). .
Griffin, L.D., Lillholm, M. (Eds.), (2003). Proceedings of the Scale Space 2003 conference. Springer.
Hansen, M.S., Atkinson, D., Kozerke, S. (2003). Retrospective correction of post navigator delays in coronary MRA.
Hartkens, T., Hill, D.L., Castellano-Smith, A.D., Hawkes, D.J., Maurer, C.R., Jr, M., ...C, L. (2003). Measurement and analysis of brain deformation during neurosurgery. IEEE Transactions on Medical Imaging, 22 (1), 82-92. doi:10.1109/TMI.2002.806596
Hawkes, D.J., Edwards, P.J., Barratt, D.C., Blackall, J.M., Penney, G.P., Tanner, C. (2003). Measuring and Modeling Soft Tissue Deformation for Image Guided Interventions.
Hawkes, D.J., Hill, D.L. (2003). Medical imaging at Guy's Hospital, King's College London. IEEE TRANS MED IMAGING, 22 (278-0062 (Print), 9), 1033-1041.
Heino, J., Arridge, S., Sikora, J., Somersalo, E. (2003). Anisotropic effects in highly scattering media. Physical Review E, 68 (3), 031908-1-031908-8. doi:10.1103/PhysRevE.68.031908
Hickman, S.J., Coulon, O., Parker, G.J.M., Barker, G.J., Stevenson, V.L., Chard, D.T., ...Miller, D.H. (2003). Application of a B-spline active surface technique to the measurement of cervical cord volume in multiple sclerosis from three-dimensional MR images. Journal of Magnetic Resonance Imaging, 18 (3), 368-371. doi:10.1002/jmri.10354
Hipwell, J.H., Penney, G.P., McLaughlin, R.A., Rhode, K., Summers, P., Cox, T.C., ...Hawkes, D.J. (2003). Intensity-based 2-D-3-D registration of cerebral angiograms. IEEE TRANS MED IMAGING, 22 (278-0062 (Print), 11), 1417-1426.
Hutton, T.J., Buxton, B.F., Hammond, P. (2003). Automated registration of 3D faces using dense surface models.
Hutton, T.J., Buxton, B.F., Hammond, P. (2003). Automated registration of 3D faces using dense surface models.
Hutton, T.J., Buxton, B.F., Hammond, P., Potts, H.W.W. (2003). Estimating average growth trajectories in shape-space using kernel smoothing. IEEE Transactions on Medical Imaging, 22 (6), 747-753. doi:10.1109/TMI.2003.814784
Jansons, K.M., Alexander, D.C. (2003). Persistent Angular Structure: new insights from diffusion MRI data. Dummy version.. Inf Process Med Imaging, 18 672-683.
Jansons, K.M., Alexander, D.C. (2003). Persistent Angular Structure: new insights from diffusion MRI data. Dummy version.. Information processing in medical imaging : proceedings of the ... conference, 18 672-683.
Jansons, K.M., Alexander, D.C. (2003). Persistent Angular Structure: New Insights from Diffusion Magnetic Resonance Imaging Data. Inverse Problems, 19 1031-1046. doi:10.1088/0266-5611/19/5/303
Johnson, L.G., Edwards, P., Hawkes, D. (2003). Surface transparency makes stereo overlays unpredictable: the implications for augmented reality.. Studies in health technology and informatics, 94 131-136.
Johnson, L.G., Edwards, P.J., Barratt, D.C., Hawkes, D.J. (2003). The problem of perceiving accurate depth information through a surgical augmented reality system.
Kolehmainen, V., Prince, S., Arridge, S.R., Kaipio, J.P. (2003). State Estimation Approach to Non-Stationary Optical Tomography Problem. Journal of the Optical Society of America A: Optics, Image Science, and Vision, (20), 876-889.
Langdon, W.B., Barrett, S.J., Buxton, B. (2003). Comparison of AdaBoost and Genetic Programming for combining Neural Networks for Drug Discovery.
Langdon, W.B., Barrett, S.J., Buxton, B.F. (2003). Comparison of AdaBoost and Genetic Programming for combining Neural Networks for Drug Discovery.
Langdon, W.B., Barrett, S.J., Buxton, B.F. (2003). Predicting Biochemical Interactions - Human P450 2D6 Enzyme Inhibition.
Lillholm, M., Nielsen, M., Griffin, L.D. (2003). Feature-based image analysis. International Journal of Computer Vision, 52 (2-3), 73-95. doi:10.1023/A:1022995822531
Manzke, R., Grass, M., Nielsen, T., Shechter, G., Hawkes, D. (2003). Adaptive temporal resolution optimization in helical cardiac cone beam CT reconstruction. MEDICAL PHYSICS, 30 (12), 3072-3080. doi:10.1118/1.1624756
Marti-Lopez, L., Bouza-Dominguez, J., Hebden, J.C., Arridge, S.R., Martinez-Celorio, R.A. (2003). Validity conditions for radiative transfer equation. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 20 (11), 2046-2056.
Miquel, M.E., Hill, D.L., Baker, E.J., Qureshi, S.A., Simon, R.D., Keevil, S.F., Razavi, R.S. (2003). Three- and four-dimensional reconstruction of intra-cardiac anatomy from two-dimensional magnetic resonance images. INT J CARDIOVASC IMAGING, 19 (569-5794 (Print), 3), 239-254.
Noble, N.M., Hill, D.L., Breeuwer, M., Schnabel, J.A., Hawkes, D.J., Gerritsen, F.A., Razavi, R. (2003). Myocardial delineation via registration in a polar coordinate system. ACAD RADIOL, 10 (076-6332 (Print), 12), 1349-1358.
Oliveira, J., Zhang, D., Spanlang, B., Buxton, B. (2003). Animating Scanned Human Models. Journal of WSCG, 11 (2), 362-369.
Parker, G.J.M., Alexander, D.C. (2003). Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information.
Parker, G.J.M., Alexander, D.C. (2003). Probabilistic Monte-Carlo based mapping of cerebral connections utilising crossing fibre information.
Prince, S., Kolehmainen, V., Kaipio, J.P., Franceschini, M.A., Boas, D., Arridge, S.R. (2003). Time-Series Estimation of Biological Factors in Optical Diffusion Tomography. Physics in Medicine and Biology, (48), 1491-1504.
Razavi, R., Hill, D.L., Keevil, S.F., Miquel, M.E., Muthurangu, V., Hegde, S., ...Hawkes, D.J. (2003). Cardiac catheterisation guided by MRI in children and adults with congenital heart disease. The Lancet, 362 (9399), 1877-1882. doi:10.1016/S0140-6736(03)14956-2
Razavi, R.S., Hill, D.L., Muthurangu, V., Miquel, M.E., Taylor, A.M., Kozerke, S., Baker, E.J. (2003). Three-dimensional magnetic resonance imaging of congenital cardiac anomalies. Cardiology in the Young, 13 (5), 461-465. doi:10.1017/S1047951103000957
Rhode, K.S., Hill, D.L., Edwards, P.J., Hipwell, J., Rueckert, D., Sanchez Ortiz, G., ...Razavi, R. (2003). Registration and tracking to integrate X-ray and MR images in an XMR facility. IEEE Transactions on Medical Imaging, 22 (11), 1369-1378. doi:10.1109/TMI.2003.819275
Schweiger, M., Arridge, S.R. (2003). Image reconstruction in optical tomography using local basis functions. JOURNAL OF ELECTRONIC IMAGING, 12 (4), 583-593. doi:10.1117/1.1586919
Schweiger, M., Gibson, A.P., Arridge, S.R. (2003). Computational aspects of diffuse optical tomography. Computing in Science and Engineering, 5 (6), 33-41. doi:10.1109/MCISE.2003.1238702
Spanlang, B., Vassilev, T., Buxton, B.F. (2003). Virtual Try-on in a Department Store.
Steed, A., Alexander, D., Cook, P., Parker, C. (2003). Visualizing Diffusion-Weighted MRI Data Using Collaborative Virtual Environment and Grid Technologies.
Stott, J.J., Culver, J.P., Arridge, S.R., Boas, D. (2003). Optode positional calibration in diffuse optical tomography. Applied Optics, 42 3154-3162.
Sukel, K.E., Catrambone, R., Essa, I.A., Brostow, G.J. (2003). Presenting Movement in a Computer-Based Dance Tutor.. INTERNATIONAL JOURNAL OF HUMAN-COMPUTER INTERACTION, 15 (3), 433-452. doi:10.1207/S15327590IJHC1503_08
Tahan, A., Buxton, B., Ruiz, M., Bougourd, J. (2003). Point Distribution Models of Human Body Shape from a Cononical Representation of 3D.
Tanner, C., Schnabel, J.A., Castellano-Smith, A.D., Degenhard, A., Leach, M.O., Hose, D.R., ...Hawkes, D.J. (2003). Validation of nonrigid image registration using finite-element methods: application to breast MR images. IEEE Transactions on Medical Imaging, 22 (2), 238-247. doi:10.1109/TMI.2002.808367
Ward, J.J., McGuffin, L.J., Buxton, B.F., Jones, D.T. (2003). Secondary structure prediction using support vector machines. Bioinformatics, 19 (13), 1650-1655. doi:10.1093/bioinformatics/btg223
Yusof, R., Hebden, J.C., Gibson, A., Everdell, N., Austin, T., Meek, J., ...Delpy, D.T. (2003). Validation of the use of homogenous reference phantoms for optical tomography of the neonatal brain. Proceedings of SPIE, 4955 6-11.

2002

Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Model selection in MR diffusion imaging.
Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Tissue structure complexity maps from high angular resolution diffusion weighted magnetic resonance measurements.
Alexander, D.C., Barker, G.J., Arridge, S.R. (2002). Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magnetic Resonance in Medicine, 48 (2), 331-340. doi:10.1002/mrm.10209
Alexander, D.C., Jansons, K.M. (2002). Spin echo attenuation to diffusion density: a general inversion for measurements on a sphere.
Arridge, S. (2002). Diffusion tomography in dense media. In Pike, E.R., Sabatier, P. (Eds.), Scattering. (pp. 920-936). Academic Press.
Atkinson, D. (2002). METHOD AND APPARATUS FOR REDUCING THE EFFECTS OF MOTION IN AN IMAGE. WO02086531A1.
Atkinson, D., Bydder, M., Hajnal, J.V., Hill, D.L.H., Larkman, D.J. (2002). SMASH Navigators.
Axer, H., Leunert, M., Mürköster, M., Gräßel, D., Larsen, L., Griffin, L.D., Keyserlingk, D.G.V. (2002). A 3D fiber model of the human brainstem. Computerized Medical Imaging and Graphics, 26 (6), 439-444. doi:10.1016/S0895-6111(02)00036-8
Batchelor, P.G., Atkinson, D., Hill, D.L.G., Calamante, F., Connelly, A. (2002). Optimisation of Direction Schemes for Tensor Imaging: Rotational Invariance of the Normal Matrix.
Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G., Hawkes, D.J., Cox, T.C.S., Dean, A.F. (2002). Measures of folding applied to the development of the human fetal brain.. IEEE transactions on medical imaging, 21 (8), 953-965. doi:10.1109/tmi.2002.803108
Batchelor, P.G., Castellano Smith, A.D., Hill, D.L., Hawkes, D.J., Cox, T.C., Dean, A.F. (2002). Measures of folding applied to the development of the human fetal brain. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 8), 953-965.
Batchelor, P.G., Hill, D.L.G., Atkinson, D., Calamante, F., Connelly, A. (2002). Fibre-tracking by solving the diffusion-convection equation.
Batchelor, P.G., Hill, D.L.G., Atkinson, D., Calamante, F., Connelly, A. (2002). Optimal choice of directions for Diffusion Tensor Imaging.
Bland, T., Hebden, J.C., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical Tomography of the Breast using a 32-Channel Time-Resolved Imager.
Cook, P.A., Alexander, D.C. (2002). Examination of White Matter Tissue Structures in the Human Brain.
Coulon, O., Hickman, S.J., Parker, G.J., Barker, G.J., Miller, D.H., Arridge, S.R. (2002). Quantification of spinal cord atrophy from magnetic resonance images via a B-spline active surface model.. Magnetic Resonance in Medicine, 47 (6), 1176-1185.
Curran, K.M., Alexander, D.C. (2002). Orientation matching for registration of diffusion tensor images.
Degenhard, A., Tanner, C., Hayes, C., Hawkes, D.J., Leach, M.O. (2002). Comparison between radiological and artificial neural network diagnosis in clinical screening. PHYSIOL MEAS, 23 (967-3334 (Print), 4), 727-739.
Dias, M.B., Buxton, B.F. (2002). Integrated Shape and Pose Modelling.
Douros, I., Buxton, B.F. (2002). Three-Dimensional Surface Curvature Estimation using Quadric Surface Patches.
Gee, J.C., Alexander, D.C., Rivera, M., Duda, J.T. (2002). Non-rigid registration of diffusion tensor MR images.
Gibson, A., Dehghani, H., Yusof, R.M., Hillman, E.M.C., Hebden, J.C., Schweiger, M., Arridge, S.R. (2002). .
Gibson, A., Riley, J., Schweiger, M., Hebden, J.C., Arridge, S.R., Delpy, D.T. (2002). Optical Tomography of the Neonatal Head using a Patient-Specific Finite Element Mesh.
Griffin, L.D. (2002). Males are 'noisy females' when it comes to reporting the psychological structure of the basic colours. Perception, 32 (3), 387.
Griffin, L.D. (2002). Local image structure, metamerism, norms and natural image statistics. Perception, 31 (3), 377.
Hajnal, J.V., Bydder, M., Atkinson, D., Larkman, D.J., Hill, D.L.G. (2002). Data correction using SMASH navigation of k-space. Magnetic Resonance Materials in Biology, Physics and Medicine (MAGMA), 15 (S1), 53-.
Hawkes, D.J., Spendley, D.G., Alfaham, M. (2002). Hypothesis waiting for proof: unwrapping neonates for transfer. ARCH DIS CHILD FETAL NEONATAL ED, 87 (359-2998 (Print), 3), F232-.
Hebden, J.C., Bland, T., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical Tomography of the Breast using a 32-Channel Time-Resolved Imager.
Hebden, J.C., Bland, T., Hillman, E.M.C., Gibson, A., Everdell, N., Delpy, D.T., ...Douek, M. (2002). Optical tomography of the breast using a 32-channel time-resolved imager.
Hebden, J.C., Gibson, A., Yusof, R.M., Everdell, N., Hillman, E.M.C., Delpy, D.T., ...Wyatt, J.S. (2002). Three-dimensional optical tomography of the premature infant brain. Physics in Medicine and Biology, 47 (23), 4155-4166. doi:10.1088/0031-9155/47/23/303
Hebden, J.C., Hillman, E.M.C., Gibson, A., Everdell, N., Yusof, R.M., Delpy, D.T., ...Austin, J.H. (2002). .
Hill, D.L., Surrey, M.W., Danzer, H.C. (2002). Is gender selection an appropriate use of medical resources?. J ASSIST REPROD GENET, 19 (058-0468 (Print), 9), 438-439.
Hillman, E.M.C., Arridge, S.R., Hebden, J.C., Delpy, D.T. (2002). .
Hipwell, J.H., Penney, G.P., Cox, T.C., Byrne, J.V., Hawkes, D.J. (2002). 2D-3D intensity based registration of DSA and MRA – A comparison of similarity measures.
Holden, M., Schnabel, J.A., Hill, D.L. (2002). Quantification of small cerebral ventricular volume changes in treated growth hormone patients using nonrigid registration. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 10), 1292-1301.
Hutton, T.J., Buxton, B.F., Hammond, P. (2002). Estimating Average Growth Trajectories in Shape-Space using Kernel Smoothing.
Hutton, T.J., Buxton, B.F., Hammond, P. (2002). .
Jannin, P., Fitzpatrick, J.M., Hawkes, D.J., Pennec, X., Shahidi, R., Vannier, M.W. (2002). Validation of medical image processing in image-guided therapy. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 12), 1445-1449.
Jansons, K.M., Alexander, D.C. (2002). Spin echo attenuation to diffusion density: a general inversion for measurements on a sphere.
Jones, D.K., Alexander, D.C., Williams, S.C.R., Howard, R.J. (2002). Visualizing inter-subject coherence of axonal fiber orientation by diffusion tensor MRI.
Jones, D.K., Catani, M., Alexander, D.C., Howard, R.J. (2002). Diffusion tensor fiber tractography on a population averaged brain.
Jones, D.K., Griffin, L.D., Alexander, D.C., Catani, M., Horsfield, M.A., Howard, R., Williams, S.C.R. (2002). Spatial normalization and averaging of diffusion tensor MRI data sets. NEUROIMAGE, 17 (2), 592-617. doi:10.1006/nimg.2002.1148
Jones, D.K., Griffin, L.D., Alexander, D.C., Catani, M., Horsfield, M.A., Howard, R., Williams, S.C.R. (2002). Spatial Normalization and Averaging of Diffusion Tensor MRI Data Sets.. NeuroImage, 17 (2), 592-617. doi:10.1016/S1053-8119(02)91148-1
Jones, D.K., Griffin, L.D., Alexander, D.C., Williams, S.C.R., Howard, R.J. (2002). Characterising a population distribution of diffusion tensors.
Langdon, W.B., Barrett, S.J., Buxton, B.F. (2002). Combining decision trees and neural networks for drug discovery.
McLaughlin, R.A., Hipwell, J., Hawkes, D.J., Alison Noble, J., Byrne, J.V., Cox, T. (2002). A comparison of 2D-3D intensity-based registration and feature-based registration for neurointerventions.
McLeish, K., Hill, D.L., Atkinson, D., Blackall, J.M., Razavi, R. (2002). A study of the motion and deformation of the heart due to respiration. IEEE TRANS MED IMAGING, 21 (278-0062 (Print), 9), 1142-1150. doi:10.1109/TMI.2002.804427
McLeish, K., Hill, D.L.H., Atkinson, D., Blackall, J.M., Razavi, R.S. (2002). A Study of the Motion and Deformation of the Heart due to Respiration.
Miquel, M.E., Atkinson, D., Clarck, L., Chandrashekara, R., Rueckert, D., Hill, D.L.G., Razavi, R.S. (2002). Non-invasive measurement of left ventricular pressure during systolic ejection period using MR function and tagged images.
Oliveira, J., Buxton, B.F. (2002). Non-linear Simplification of Scanned Models.
Penney, G.P., Little, J.A., Weese, J., Hill, D.L.G., Hawkes, D.J. (2002). Deforming a preoperative volume to represent the intraoperative scene.. Computer aided surgery : official journal of the International Society for Computer Aided Surgery, 7 (2), 63-73. doi:10.3109/10929080209146017
Penney, G.P., Little, J.A., Weese, J., Hill, D.L., Hawkes, D.J. (2002). Deforming a preoperative volume to represent the intraoperative scene. COMPUT AIDED SURG, 7 (092-9088 (Print), 2), 63-73.
Rhode, K., Lambrou, T., Seifalian, A.M., Hawkes, D.J. (2002). In-vitro validation of a novel model-based approach to the measurement of arterial blood flow waveforms from dynamic digital x-ray images.
Ruiz, M., Buxton, B.F., Douros, I., Treleaven, P.C. (2002). Web-based Software Tools for 3D Body Database Access and Shape Analysis.
Southall, B., Hague, T., Marchant, J.A., Buxton, B.F. (2002). An Autonomous Crop Treatment Robot: Part I. A Kalman Filter Model for Localisation and Crop/Weed Classification. International Journal of Robotics Research, 21 (1), 61-74. doi:10.1177/027836402320556485
Tanner, C., Schnabel, J.A., Castellano-Smith, A.D., Sonoda, L.I., Hill, D.L., Hawkes, D.J., ...Hose, D.R. (2002). Comparison of biomechanical breast models: a case study.
Tanner, C., Schnabel, J.A., Degenhard, A., Castellano-Smith, A.D., Hayes, C., Leach, M.O., ...Hawkes, D.J. (2002). Validation of volume-preserving non-rigid registration: Application to contrast-Enhanced MR-mammography.
Ye, X., Noble, J.A., Atkinson, D. (2002). 3D Freehand Echocardiography for Automatic Left Ventricle Reconstruction and Analysis based on Multiple Acoustic Windows. IEEE Transactions on Medical Imaging, 21 (9), 1051-1058. doi:10.1109/TMI.2002.804436

2001

(2001). Simultaneous imaging and optode calibration with diffuse optical tomography. Optics express, 8 (5), 263-270.
(2001). Drug design by machine learning: support vector machines for pharmaceutical data. Computers and Chemistry, 26 (1), 4-15.
(2001). Data fusion by intelligent classifier combination. Measurement and Control, 34 (8), 235-239.
(2001). Three dimensional time-resolved optical tomography of a conical breast phantom. Applied Optics, 40 3278-3287.
(2001). Support vector machines in combinatorial chemistry. Measurement and Control, 34 (8), 235-239.
Alexander, D.C., Buxton, B.F. (2001). Statistical modelling of colour data. International Journal of Computer Vision, 44 (2), 87-109. doi:10.1023/A:1011870913626
Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2001). An algorithm for preservation of orientation during non-rigid warps of DT-MR images.
Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2001). Spatial transformations of diffusion tensor magnetic resonance images. IEEE Transactions on Medical Imaging, 20 (11), 1131-1139. doi:10.1109/42.963816
Atkinson, D., Burcher, M., Declerck, J., Noble, J.A. (2001). Respiratory Motion Compensation for 3D Freehand Echocardiography. Ultrasound in Medicine and Biology, 27 (12), 1615-1620. doi:10.1016/S0301-5629(01)00483-5
Atkinson, D., Calamante, F., Hill, D.L.G., Connelly, A. (2001). Two dimensional navigator echo correction in DWI: assessment of the use of multiple reacquisition at high b-value.
Atkinson, D., Hill, D.L.G. (2001). Reconstruction After Irregular and Under Sampling Due to Rotational Motion.
Atkinson, D., Hill, D.L.G. (2001). Automatic Motion Correction Using Prior Knowledge.
Batchelor, P.G., Atkinson, D., Hill, D.L.G. (2001). Reconstruction of Tensor and Vector Data from Diffusion Tensor MRI.
Batchelor, P.G., Hill, D.L.G., Calamante, F., Atkinson, D. (2001). Study of Connectivity in the Brain Using the Full Diffusion Tensor from MRI.
Brostow, G.J., Essa, I. (2001). Image-based motion blur for stop motion animation.
Burbidge, R., Buxton, B.F. (2001). An introduction to support vector machines for data mining.
Burbidge, R., Trotter, M., Buxton, B.F., Holden, S. (2001). STAR - Sparsity Through Automated Rejection.
Buxton, B.F., Langdon, W.B., Barrett, S.J. (2001). Data fusion by intelligent classifier combination. MEASUREMENT & CONTROL, 34 (8), 229-234.
Clarkson, M.J., Rueckert, D., Hill, D.L.G., Hawkes, D.J. (2001). Using photo-consistency to register 2D optical images of the human face to a 3D surface model.. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23 (11), 1266-1280.
Coulon, O., Alexander, D.C., Arridge, S.R. (2001). A regularization scheme for diffusion tensor magnetic resonance images.
Coulon, O., Alexander, D.C., Arridge, S.R. (2001). Principal diffusion direction field regularization for diffusion tensor magnetic resonance images.
Coulon, O., Alexander, D.C., Arridge, S.R. (2001). Tensor field regularisation for DT-MR images.
Coulon, O., Parker, G.J.M., Hickman, S.J., Arridge, S.R. (2001). Quantification of spinal cord atrophy via an active surface model.
Degenhard, A., Tanner, C., Hayes, C., Hawkes, D.J., Leach, M.O. (2001). Pre-processed image reconstruction applied to breast and brain MR imaging. PHYSIOL MEAS, 22 (967-3334 (Print), 3), 589-604.
Dehghani, H., Hillman, E.M.C., Schweiger, M., Arridge, S.R., Delpy, D.T. (2001). Optical Tomography of a 3D Multi Layered Head Model. Proceedings of SPIE, 4250 45-52.
Dehmeshki, J., Ruto, A.C., Arridge, S., Silver, N.C., Miller, D.H., Tofts, P.S. (2001). Analysis of MTR histograms in multiple sclerosis using principal components and multiple discriminant analysis. Magnetic Resonance in Medicine, 46 (3), 600-609.
Edwards, P.J., Hawkes, D.J., Penney, G.P., Clarkson, M.J. (2001). Guiding Therapeutic Proceedures. In Hajnal, J.V., Hill, D.L.G., Hawkes, D.J. (Eds.), Medical Image Registration. (pp. 253-278). CRC.
Griffin, L.D. (2001). Histograms of infinitesimal neighbourhoods. In Proc. Scale Space '01, LNCS vol. 2106. (pp. 326-334). .
Hebden, J.C., Veenstra, H., Dehghani, H., Hillman, E.M.C., Schweiger, M., Arridge, S.R., Delpy, D.T. (2001). Three-dimensional time-resolved optical tomography of a conical breast phantom. Applied Optics, 40 (19), 3278-3287.
Hickman, S., Coulon, O., Parker, G.J., Barker, G.J., Stevenson, V.L., Chard, D.T., ...Miller, D.H. (2001). Cervical spinal cord volume estimation using an active surface method: a amgnetic resonance imaging study in multiple sclerosis.
Hill, D.L., Batchelor, P.G., Holden, M., Hawkes, D.J. (2001). Medical image registration. PHYS MED BIOL, 46 (031-9155 (Print), 3), R1-45.
Hill, D.L., Batchelor, P.G., Holden, M., Hawkes, D.J. (2001). Medical image registration.. Physics in medicine and biology, 46 (3), R1-45. doi:10.1088/0031-9155/46/3/201
Hill, D.L.G., Batchelor, P.G. (2001). Registration Methodology-Algorithms,. In Hajnal, J., Hill, D.L.G., Hawkes, D. (Eds.), Medical Image Registration,. CRC.
Hillman, E.M.C., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T., Chance, B. (2001). Differential Imaging in Heterogeneous Media: Limitations of Linearisation Assumptions in Optical Tomography. Bellingham, 4240 327-338.
Hillman, E.M.C., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T., Schmidt, F.E.W. (2001). Time Resolved Optical Tomography of the Human Forearm. Physics in Medicine and Biology, 46 1117-1130.
Hillman, E.M., Dehghani, H., Hebden, J.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2001). Differential imaging in heterogeneous media: limitations of linearization assumptions in optical tomography.
Hutton, T.J., Buxton, B.F., Hammond, P. (2001). Dense surface point distribution models of the human face.
King, A.P., Batchelor, P.G., Penney, G.P., Blackall, J.M., Hill, D.L.G., Hawkes, D.J. (2001). Estimating Sparse Deformation Fields Using Multiscale Bayesian Priors and 3-D Ultrasound.
Langdon, W.B., Barrett, S.J., Buxton, B.F. (2001). Genetic programming for combining neural networks for drug discovery.
Langdon, W.B., Barrett, S.J., Buxton, B.F. (2001). Genetic programming for combining neural networks.
Langdon, W.B., Buxton, B.F. (2001). Evolving receiver operating characteristics for data fusion.
Langdon, W.B., Buxton, B.F. (2001). Genetic programming for combining classifiers.
Langdon, W.B., Buxton, B.F. (2001). Genetic Programming for Improved Receiver Operating Characteristics.
McLeish, K., Atkinson, D., Hill, D.L.G., Keevil, S.F. (2001). Inverse MRI:Imaging a Freely Rotating Object.
Oliveira, J., Buxton, B.F. (2001). Light weight virtual humans.
Oliveira, J., Buxton, B.F. (2001). Light-weight virtual humans.
Penney, G.P., Batchelor, P.G., Hill, D.L., Hawkes, D.J., Weese, J. (2001). Validation of a two- to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images. MED PHYS, 28 (094-2405 (Print), 6), 1024-1032.
Penney, G.P., Batchelor, P.G., Hill, D.L., Hawkes, D.J., Weese, J. (2001). Validation of a two- to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images.. Medical physics, 28 (6), 1024-1032. doi:10.1118/1.1373400
Penney, G.P., Edwards, P.J., King, A.P., Blackall, J.M., Batchelor, P.G., Hawkes, D.J. (2001). Stochastic Iterative Closest Point Algorithm (stochastICP).
Riley, J.D., Arridge, S.R., Chrysanthou, Y., Dehghani, H., Hillman, E.M. (2001). The radiosity diffusion model in 3D.
Ripoll, J., Nieto-Vesperinas, M., Arridge, S.R. (2001). Effect of roughness in nondiffusive regions within diffusive media. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 18 (4), 940-947. doi:10.1364/JOSAA.18.000940
Schweiger, M., Arridge, S.R. (2001). Fast 3D image reconstruction in optical tomography using coarse-gain parallelization strategy.
Tanner, C., Degenhard, A., Schnabel, J.A., Smith, A.C., Hayes, C., Sonoda, L.I., ...Hawkes, D.J. (2001). A method for the comparison of biomechanical breast models.
Wickramaratna, J., Holden, S.B., Buxton, B.F. (2001). Performance degradation in boosting.

2000

Alexander, D.C., Gee, J.C. (2000). Elastic matching of diffusion tensor images. Computer Vision and Image Understanding, 77 (2), 233-250.
Alexander, D.C., Gee, J.C. (2000). Spatial transformations for registration of DT-MRIs.
Alexander, D.C., Pierpaoli, C., Basser, P.J., Gee, J.C. (2000). Techniques for spatial normalisation of diffusion tensor images.
Arridge, S.R. (2000). Linear and non-linear methods in optical tomography.
Arridge, S.R., Dehghani, H., Schweiger, M., Okada, E. (2000). The finite element model for the propagation of light in scattering media: a direct method for domains with nonscattering regions. Medical Physics, 27 (1), 252-264.
Arridge, S.R., Hebden, J.C., Schweiger, M., Schmidt, F.E., Fry, M.E., Hillman, E.M., ...Delpy, D.T. (2000). A method for three-dimensional time-resolved optical tomography. International Journal of Imaging Systems and Technology, 11 2-11.
Arridge, S.R., Hebden, J.C., Schwinger, M., Schmidt, F.E.W., Fry, M.E., Hillman, E.M.C., ...Delpy, D.T. (2000). A method for three-dimensional time-resolved optical tomography. INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY, 11 (1), 2-11.
Atkinson, D., Porter, D.A., Hill, D.L., Calamante, F., Connelly, A. (2000). Sampling and reconstruction effects due to motion in diffusion-weighted interleaved echo planar imaging. MAGN RESON MED, 44 (1), 101-109.
Castellano Smith, A.D., Batchelor, P.G., Chitnis, X.A., Hill, D.L.G., Sharma, T. (2000). Cortical Shape Differences between Schizophrenics and Normals.
Castellano Smith, A.D., Batchelor, P.G., Hill, D.L.G., Dean, A.D., Cox, T., Hawkes, D.J. (2000). The Shape of the Developing Foetal Cortex from MR Images.
Castellano Smith, A.D., Batchelor, P.G., Hill, D.L.G., Dean, A.D., Cox, T., Hawkes, D.J. (2000). he Shape of the Developing Foetal Cortex from MR Images.
Clarkson, M.J., Rueckert, D., Hill, D.L., Hawkes, D.J. (2000). Multiple 2D video/3D medical image registration algorithm.
Coulon, O., Arridge, S.R. (2000). Dual echo MR image processing using multi-spectral probabilistic diffusion coupled with shock filters.
Dehghani, H., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Optical tomography in the presence of void regions. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 17 (9), 1659-1670. doi:10.1364/JOSAA.17.001659
Dehghani, H., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Image reconstruction in the presence of a void region.
Dehmeshki, J., Ruto, A.C., Parker, G.J.M., Arridge, S., Miller, D.H., Tofts, P.S. (2000). Detection and classification of MS using magnetisation transfer ratio images.
Denton, E.R., Holden, M., Christ, E., Jarosz, J.M., Russell-Jones, D., Goodey, J., ...Hill, D.L. (2000). The identification of cerebral volume changes in treated growth hormone-deficient adults using serial 3D MR image processing. J COMPUT ASSIST TOMOGR, 24 (363-8715 (Print), 1), 139-145.
Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (2000). Design and evaluation of a system for microscope-assisted guided interventions (MAGI). IEEE TRANSACTIONS ON MEDICAL IMAGING, 19 (11), 1082-1093. doi:10.1109/42.896784
Griffin, L.D. (2000). Psychological Colour Space is Physical Colour Space. Perception, 29 (1), 119.
Hansard, M.E., Buxton, B. (2000). Parametric view-synthesis.
Hawkes, D.J., Rueckert, D., Clarkson, M.J. (2000). Method of 3D/2D Registration of optical views to a surface model. WO0159708 (A1).
Hebden, J.C., Schmidt, F.E.W., Hillman, E.M.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). .
Hebden, J.C., Schmidt, F.E.W., Hillman, E.M.C., Arridge, S.R., Schweiger, M., Delpy, D.T. (2000). Optical tomography of the human forearm.
Hill, D.L., Smith, A.D., Simmons, A., Maurer, C.R., Jr, C., T C, E., ...C, E. (2000). Sources of error in comparing functional magnetic resonance imaging and invasive electrophysiological recordings. J NEUROSURG, 93 (022-3085 (Print), 2), 214-223.
Hillman, E.M.C., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Fry, M.E., Schweiger, M., Delpy, D.T. (2000). Initial clinical testing of the UCL 32 channel time-resolved instrument for optical tomography.
Hillman, E.M.C., Hebden, J.C., Schmidt, F.E.W., Arridge, S.R., Schweiger, M., Dehghani, H., Delpy, D.T. (2000). Calibration techniques and datatype extraction for time-resolved optical tomography. REVIEW OF SCIENTIFIC INSTRUMENTS, 71 (9), 3415-3427. doi:10.1063/1.1287748
Hillman, E.M., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Fry, M.E., Schweiger, M., Delpy, D.T. (2000). Intitial clinical testing of the UCL 32 channel time-resolved instrument for optical tomography.
Hillman, E.M., Hebden, J.C., Schmidt, F.E., Arridge, S.R., Schweiger, M., Dehghani, H., Delpy, D.T. (2000). Calibration techniques and datatype extraction for time-resolved optical tomography. Review of Scientific Instruments, 71 (9), 3415-3427.
Holden, M., Hill, D.L., Denton, E.R., Jarosz, J.M., Cox, T.C., Rohlfing, T., ...Hawkes, D.J. (2000). Voxel similarity measures for 3-D serial MR brain image registration. IEEE TRANS MED IMAGING, 19 (278-0062 (Print), 2), 94-102.
Kashio, Y., Ono, M., Firbank, M., Schweiger, M., Arridge, S.R., Okada, E. (2000). Investigation of the relationship between position of brain activity and change in optical density for NIR imaging.
Kolehmainen, V., Arridge, S.R., Vauhkonen, M., Kaipio, J.P. (2000). Simultaneous reconstruction of internal tissue region boundaries and coefficients in optical diffusion tomography. Physics in Medicine and Biology, 45 (11), 3267-3284.
Kolehmainen, V., Vauhkonen, M., Kaipio, J.P., Arridge, S.R. (2000). Recovery of piecewise constant coefficients in optical diffusion tomography. Optics express, 7 (13), 468-480.
O'Brien, J.F., Bodenheimer, R.E., Brostow, G.J., Hodgins, J.K. (2000). Automatic joint parameter estimation from magnetic motion capture data.
Ono, M., Kashio, Y., Schweiger, M., Dehghani, H., Arridge, S.R., Firbank, M., Okada, E. (2000). Topographic distribution of photon measurement density functions on the brain surface by hybrid radiosity-diffusion method. OPTICAL REVIEW, 7 (5), 426-431. doi:10.1007/s10043-000-0426-x
Pineda, A.R., Barrett, H.H., Arridge, S.R. (2000). Spatially varying detectability for optical tomography.
Rhode, K., Lambrou, T., Hawkes, D.J., Hamilton, G., Seifalian, A.M. (2000). Validation of an optical flow algorithm to measure blood flow waveforms in arteries using dynamic digital x-ray images. Proceedings of SPIE, 1 (24 (Sp), 1414-1425.
Riley, J., Dehghani, H., Schweiger, M., Arridge, S.R., Ripoli, J., Nieto-Vesperinas, M. (2000). 3D optical tomography in the presence of void regions. Optics express, 7 (13), 462-467.
Ripoll, J., Arridge, S.R., Dehghani, H., Nieto-Vesperinas, M. (2000). Boundary conditions for light propagation in diffusive media with nonscattering regions. Journal of the Optical Society of America A: Optics, Image Science, and Vision, 17 (9), 1671-1681.
Ripoll, J., Arridge, S.R., Nieto-Vesperinas, M. (2000). Effect of roughness in non-diffusive regions within diffusive media.
Rueckert, D., Clarkson, M.J., Hill, D.L.G., Hawkes, D.J. (2000). Non-rigid registration using higher-order mutual information.
Schmidt, F.E.W., Hebden, J.C., Hillman, E.M.C., Fry, M.E., Schweiger, M., Delpy, D.T., ...Dehghani, H. (2000). Multiple-slice imaging of a tissue-equivalent phontom by use of time-resolved optical tomography. Applied Optics, 39 (19), 3380-3387.
Southall, B., Buxton, B.F., Marchant, J.A., Hague, T. (2000). On the performance characterisation of image segmentation algorithms: a case study.
Tanner, C., Schnabel, A., Chung, D., Clarkson, M.J., Rueckert, D., Hill, D.L.G., Hawkes, D.J. (2000). Volume and shape preservation of enhancing lesions when applying non-rigid registration to a time series of contrast enhancing MR breast images.
Valdivieso-Casique, M., Arridge, S. (2000). A comparison of the use of different image features in a non linear registration algorithm.

1999

(1999). Recovery of region boundaries of piecewise constant coefficients of an elliptic PDE from boundary data. Inverse Problems, 15 1375-1391.
(1999). Very low bit rate video compression using linear combination of 2D face views and principal components analysis. Image and Vision Computing, 17 (14), 1031-1051.
(1999). A survey of hierarchical non-linear medical image registration. Pattern Recognition, 32 129-149.
(1999). Optical tomography in medical imaging. Topical Review Inverse Problems, 15 R14-R93.
Alexander, D.C. (1999). Advances in daylight statistical colour modelling.
Alexander, D.C., Buxton, B.F. (1999). An empirical comparison of statistical chromaticity models.
Alexander, D.C., Gee, J., Bajcsy, R. (1999). Similarity measures for matching diffusion tensor images.
Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images.
Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Transformation of and similarity measures for diffusion tensor MRIs.
Alexander, D.C., Gee, J.C., Bajcsy, R. (1999). Elastic matching of diffusion tensor MRIs.
Amos, G., Buxton, B.F. (1999). Positioning human body models with Lagrange multipliers.
Arridge, S.R. (1999). Optical tomography in medical imaging. INVERSE PROBLEMS, 15 (2), R41-R93. doi:10.1088/0266-5611/15/2/022
Arridge, S.R., Schweiger, M. (1999). A General Framework for Iterative Reconstruction Algorithms in Optical Tomography, Using a Finite Element Method. In Boergers, C., Natterer, F. (Eds.), Computational Radiology and Imaging - Therapy and Diagnostics. (pp. 45-70). New York, USA: Springer.
Atkinson, D., Hill, D.L., Stoyle, P.N., Summers, P.E., Clare, S., Bowtell, R., Keevil, S.F. (1999). Automatic compensation of motion artifacts in MRI. Magnetic Resonance in Medicine, 41 163-170. doi:10.1002/(SICI)1522-2594(199901)41:1<163::aid-mrm23>3.0.CO;2-9
Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G. (1999). Proper Scales of Shapes-A Curved Scale Space.
Brostow, G.J., Essa, I.A. (1999). Motion based Decompositing of Video..
Casique, M.V., Arridge, S.R. (1999). Non-linear Registration using a Finite Element Method..
Clarkson, M.J., Rueckert, D., Hill, D.L., Hawkes, D.J. (1999). Registration of multiple video images to preoperative CT for image-guided surgery.
Clarkson, M.J., Rueckert, D., King, A.P., Edwards, P.J., Hill, D.L.G., Hawkes, D.J. (1999). Registration of Video Images to Tomographic Images by Optimising Mutual Information Using Texture Mapping.
Dehghani, H., Delpy, D.T., Arridge, S.R. (1999). Photon migration in non-scattering tissue and the effects on image reconstruciton. Physics in Medicine and Biology, 44 (12), 2897-2906.
Dekker, L., Douros, I., Buxton, B.F., Treleaven, P. (1999). Building symbolic information for 3-D human body modelling from range data.
Denton, E.R., Sonoda, L.I., Rueckert, D., Rankin, S.C., Hayes, C., Leach, M.O., ...Hawkes, D.J. (1999). Comparison and evaluation of rigid, affine, and nonrigid registration of breast MR images. J COMPUT ASSIST TOMOGR, 23 (363-8715 (Print), 5), 800-805.
Douros, I., Dekker, L., Buxton, B.F. (1999). Reconstruction of the surface of the human body from 3D scanner data using B-splines.
Douros, I., Dekker, L., Buxton, B.F. (1999). An improved algorithm for reconstruction of the surface of the human body from 3D scanner data using local B-spline patches.
Edwards, P.J., King, A.P., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Strong, A.J. (1999). Design and evaluation of a system for microscope-assisted guided interventions (MAGI).
Griffin, L.D. (1999). Empirical assessment of colour symmetries. Behavioral and Brain Sciences, 22 (6), 952-953. doi:10.1017/S0140525X99312218
Hebden, J.C., Schmidt, F.E.W., Fry, M.E., Schweiger, M., Hillman, E.M.C., Delpy, D.T., Arridge, S. (1999). Simultaneous reconstruction of absorption and scattering images using multi-channel measurement of purely temporal data. Optics Letters, 24 534-536.
Holden, M., Hill, D.L.G., Denton, E.R.E., Jarosz, J.M., Cox, T.C.S., Hawkes, D.J. (1999). Voxel similarity measures for 3D serial MR brain image registration.
Kennedy, D.M., Buxton, A.F., Gilby, J.H. (1999). Application of the total least squares procedure to linear view interpolation.
King, A.P., Edwards, P.J., Maurer, C.R., de Cunha, D.A., Hawkes, D.J., Hill, D.L.G., ...Fenlon, M.R. (1999). A system for microscope-assisted guided interventions.
Lester, H., Arridge, S.R., Jansons, K.M., Lemieux, L., Hajnal, J.V., Oatridge, A. (1999). Non-linear registration with the variable viscosity fluid algorithm.. Lecture Notes in Computer Science, 1613 238-251.
Oliveira, J., Buxton, B.F. (1999). Creating light-weight virtual humans for virtual environments.
Rueckert, D., Sonoda, L.I., Hayes, C., Hill, D.L., Leach, M.O., Hawkes, D.J. (1999). Nonrigid registration using free-form deformations: application to breast MR images. IEEE TRANS MED IMAGING, 18 (278-0062 (Print), 8), 712-721.
Rueckert, D., Sonoda, L.I., Hayes, C., Hill, D.L., Leach, M.O., Hawkes, D.J. (1999). Nonrigid registration using free-form deformations: application to breast MR images.. IEEE transactions on medical imaging, 18 (8), 712-721. doi:10.1109/42.796284
Ruff, C.F., Hughes, S.W., Hawkes, D.J. (1999). Volume Estimation from Sparse Planar Images using Deformable Models. Image and Vision Computing, 17 (8), 559-565.
Schnabel, J.A., Lemieux, L., Wieshmann, U.C., Arridge, S.R. (1999). Measurement of hippocampal volume changes in serial MRI scans.
Schweiger, M., Arridge, S.R. (1999). Application of temporal filters to time resolved data in optical tomography. PHYSICS IN MEDICINE AND BIOLOGY, 44 (7), 1699-1717. doi:10.1088/0031-9155/44/7/310
Schweiger, M., Arridge, S.R. (1999). Optical tomographic reconstruction in a complex head model using a priori region boundary information. PHYSICS IN MEDICINE AND BIOLOGY, 44 (11), 2703-2721. doi:10.1088/0031-9155/44/11/302
Schweiger, M., Zhukov, L., Arridge, S.R., Johnson, C.R. (1999). Optical tomography using the SCIRun problem solving environment: Preliminary results for three-dimensional geometries and parallel processing. OPTICS EXPRESS, 4 (8), 263-269.
Schweiger, M., Zhukov, L., Arridge, S.R., Johnson, C.R. (1999). Optical tomography using the SCIRun problem solving environment: Preliminary results for three-dimensional geometries and parallel processing. Optics Express, 4 (8), 263-269.
Studholme, C., Hill, D.L.G., Hawkes, D.J. (1999). An overlap invariant entropy measure of 3D medical image alignment .. Pattern Recognition, 32 71-86.
Valdivieso-Casique, M., Arridge, S. (1999). Hierarchical non-linear image deformation with the use of finite element transformations.

1998

(1998). Active Shape Focusing. Image Vision Computing, 17 (5/6), 419-428.
(1998). Comparison of 2D and 3D reconstruction methods in optical tomography. Applied Optics, 37 (31), 7419-7428.
(1998). Non-uniqueness in diffusion-based optical tomography. Optics Letters, 23 882-884.
Arridge, S.R., Schweiger, M. (1998). A gradient-based optimisation scheme for Optical Tomography. Optics Express, 2 (6), 213-226.
Barker, G.J., Simmons, A., Arridge, S.R., Tofts, P.S. (1998). A simple method for investigating the effects of non-uniformity of radiofrequency transmission and radiofrequency reception in MRI. BRITISH JOURNAL OF RADIOLOGY, 71 (841), 59-67.
Buxton, B.F., Shafi, Z., Gilby, J. (1998). Evaluation of the construction of novel views by a combination of basis views.
Chatterjee, N., Buxton, B.F. (1998). Shape modelling for drivable open terrains: some studies.
Dekker, L., Buxton, B. (1998). Automated landmarking for virtual human modelling.
Dekker, L., Khan, S., West, E., Buxton, B.F., Treleaven, P. (1998). Models for understanding the 3D human body form.
Dorward, N.L., Alberti, O., Zhao, J., Dijkstra, A., Buurman, J., Palmer, J.D., ...Thomas, D.G.T. (1998). Interactive image-guided neuroendoscopy: Development and early clinical experience. MINIMALLY INVASIVE NEUROSURGERY, 41 (1), 31-34. doi:10.1055/s-2008-1052011
Edwards, P.J., Hill, D.L., Little, J.A., Hawkes, D.J. (1998). A three-component deformation model for image-guided surgery. MED IMAGE ANAL, 2 (361-8415 (Print), 4), 355-367.
Fitzpatrick, J.M., Hill, D.L., Shyr, Y., West, J., Studholme, C., Maurer, C.R., J.r. (1998). Visual assessment of the accuracy of retrospective registration of MR and CT images of the brain. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 4), 571-585.
Fleig, O.J., Edwards, P.J., Chandra, S., Stuttler, H., Hawkes, D.J. (1998). Automated microscope calibration for image guided surgery.
Hawkes, D.J. (1998). Algorithms for radiological image registration and their clinical application. J ANAT, 193 ( Pt 3) (021-8782 (Print)), 347-361.
Hill, D.L., Maurer, C.R., Jr, M., R J, B., J A, F., J M, W., M, Y. (1998). Measurement of intraoperative brain surface deformation under a craniotomy. NEUROSURGERY, 43 (148-396X (Print), 3), 514-526.
Hill, D.L., Maurer, C.R., Jr, S., C, F., J M, H., D, J. (1998). Correcting scaling errors in tomographic images using a nine degree of freedom registration algorithm. J COMPUT ASSIST TOMOGR, 22 (363-8715 (Print), 2), 317-323.
Hill, D.L., Maurer, C.R., Studholme, C., Fitzpatrick, J.M., Hawkes, D.J. (1998). Correcting scaling errors in tomographic images using a nine degree of freedom registration algorithm.. Journal of computer assisted tomography, 22 (2), 317-323. doi:10.1097/00004728-199803000-00031
Koufakis, I., Buxton, B.F. (1998). Linear combination of face views for low bit rate face video compression.
Maurer, C.R., Jr, H., D L, M., A J, L., H, M., M, R., ...R E, H. (1998). Investigation of intraoperative brain deformation using a 1.5-T interventional MR system: preliminary results. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 5), 817-825.
Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2-D-3-D medical image registration. IEEE TRANSACTIONS ON MEDICAL IMAGING, 17 (4), 586-595. doi:10.1109/42.730403
Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L.G., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2D-3D medical image registration.
Penney, G.P., Weese, J., Little, J.A., Desmedt, P., Hill, D.L., Hawkes, D.J. (1998). A comparison of similarity measures for use in 2-D-3-D medical image registration. IEEE TRANS MED IMAGING, 17 (278-0062 (Print), 4), 586-595.
Rueckert, D., Hayes, C., Studholme, C., Summers, P., Leach, M., Hawkes, D.J. (1998). Non-rigid registration of breast MR images using mutual information.
Schweiger, M., Arridge, S.R. (1998). Comparison of two- and three-dimensional reconstruction methods in optical tomography. APPLIED OPTICS, 37 (31), 7419-7428. doi:10.1364/AO.37.007419
Simmons, A., Arridge, S.R., Tofts, P.S., Barker, G.J. (1998). Application of the extremum stack to neurological MRI. IEEE Transactions on Medical Imaging, 17 371-382.
Smith, A.D.C., Hill, D.L.G., Hawkes, D.J., Polkey, C.E., Cox, T.C.S. (1998). Surface simplification for shape measurement - application to the human brain..
Southall, B., Buxton, B.F., Marchant, J. (1998). Controllability and observability: tools for Kalman filter design.
Southall, B., Marchant, J.A., Hague, T., Buxton, B.F. (1998). Model based tracking for navigation and segmentation.
Stoyle, P.N.R., Hill, D.L.G., Atkinson, D. (1998). METHOD AND APPARATUS FOR IMAGING ARTEFACT REDUCTION. WO9801828A1.

1997

Alexander, D.C., Buxton, B. (1997). Modelling of Single Mode Distributions of Colour Data Using Directional Statistics.
Alexander, D.C., Buxton, B.F. (1997). Implementational Improvements for Active Region Models.
Arridge, S.R., Hebden, J.C. (1997). Optical imaging in Medicine II: Modelling and Reconstruction. Physics in Medicine and Biology, 42 (5), 841-853.
Arridge, S.R., Schweiger, M. (1997). Image reconstruction in optical tomography. Philosophical Transactions of the Royal Society B: Biological Sciences, 352 (1354), 717-726.
Arridge, S.R., Simmons, A. (1997). Multi-Spectral Probabilistic Diffusion Using Baysian Classification.
Atkinson, D., Hill, D.L.G., Stoyle, P.N.R., Summers, P.E., Keevil, S.F. (1997). An Autofocus Algorithm for the Automatic Correction of Motion Artifacts in MR Images..
Atkinson, D., Hill, D.L., Stoyle, P.N., Summers, P.E., Keevil, S.F. (1997). Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion. IEEE TRANS MED IMAGING, 16 (6), 903-910.
Edwards, P.J., Hill, D.L.G., Little, J.A., Hawkes, D.J. (1997). Deformation for image guided interventions using a three component tissue model.
Hebden, J., Arridge, S.R. (1997). Imaging through Scattering Media by the Use of an Analytical Model of Perturbation Amplitudes in the Time Domain. Applied Optics, 35 (34), 6788-6796.
Hebden, J., Arridge, S.R., Delpy, D.T. (1997). Optical Imaging in Medicine 1: Experimental Technigues. Physics in Medicine and Biology, 42 (5), 825-840.
Hill, D.L., Langsaeter, L.A., Poynter-Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., ...Gleeson, M.J. (1997). Feasibility study of magnetic resonance imaging-guided intranasal flexible microendoscopy. COMPUT AIDED SURG, 2 (092-9088 (Print), 5), 264-275.
Hill, D.L., Langsaeter, L.A., Poynter-Smith, P.N., Emery, C.L., Summers, P.E., Keevil, S.F., ...Gleeson, M.J. (1997). Feasibility study of magnetic resonance imaging-guided intranasal flexible microendoscopy.. Computer aided surgery : official journal of the International Society for Computer Aided Surgery, 2 (5), 264-275. doi:10.1002/(sici)1097-0150(1997)2:5<264::aid-igs2>3.0.co;2-y
Kadam, S., Roberts, G., Buxton, B. (1997). Design Patterns for Parallelizing Vision-Related Applications on Network of Workstations.
Kwee, I.W., Tanikawa, Y., Proskurin, S., Arridge, S.R., Delpy, D.T., Yamada, Y. (1997). Performance of a nullspace-MAP image reconstruction algorithm. PROC S P I E, (2979), 185-196.
Lester, H., Arridge, S.R. (1997). Summarising Fluid Registration by Thin-Plate Spline Warps with Many Landmarks.
Lester, H., Arridge, S.R. (1997). Combining Fluid Deformations and Sline Warps: Fully Automatic Non-Linear Registration witha Large Number of Landmarks.
Lester, H., Arridge, S.R. (1997). Reducing the Blurring Effects of Successive Regridding in the Fluid Warp.
Little, J.A., Hawkes, D.J. (1997). The registration of multiple medical images acquired from a single subject: why, how, what next?. STAT METHODS MED RES, 6 (962-2802 (Print), 3), 239-265.
Little, J.A., Hill, D.L.G., Hawkes, D.J. (1997). Deformations incorporating rigid structures .. Computer Vision Image Understanding, 66 (2), 223-232.
Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Cope, M., Delpy, D.T. (1997). A Theoretical and Experimental Investigation of Near Infrared Light Propagation in a Model of the Adult Head. Applied Optics, 36 (1), 21-31.
Schnabel, J.A., Arridge, S.R. (1997). Active Shape Focusing.
Schnabel, J.A., Arridge, S.R. (1997). Multi-Scale Active Shape Description.
Schnabel, J.A., Arridge, S.R. (1997). Multi-Scale Shape Description in Medical Imaging.
Schweiger, M., Arridge, S.R. (1997). Optimal data types in optical tomography. Information Processing in Medical Imaging (IPM'97 Proceedings)Lecture notes in Computer Science, 1230 71-84.
Schweiger, M., Arridge, S.R. (1997). The finite element method for the propagation of light in scattering media: Frequency domain case. MED PHYS ,, 24 (6), 895-902.
Schweiger, M., Arridge, S.R. (1997). Direct calculation with a finite-element method of the Laplace transform of the distribution of photon time of flight in tissue. APPL OPT ,, 36 (34), 9042-9049.
Studholme, C., Hill, D.L., Hawkes, D.J. (1997). Automated three-dimensional registration of magnetic resonance and positron emission tomography brain images by multiresolution optimization of voxel similarity measures. MED PHYS, 24 (094-2405 (Print), 1), 25-35.
Summers, P.E., Bhalerao, A.H., Hawkes, D.J. (1997). Multiresolution, model-based segmentation of MR angiograms. J MAGN RESON IMAGING, 7 (053-1807 (Print), 6), 950-957.
Weese, J., Penney, G.P., Desmedt, P., Buzug, T.M., Hill, D.L., Hawkes, D.J. (1997). Voxel-based 2-D/3-D registration of fluoroscopy images and CT scans for image-guided surgery. IEEE TRANS INF TECHNOL BIOMED, 1 (089-7771 (Print), 4), 284-293.
West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Jr, K., ...D, C. (1997). Comparison and evaluation of retrospective intermodality brain image registration techniques. J COMPUT ASSIST TOMOGR, 21 (363-8715 (Print), 4), 554-566.
West, J., Fitzpatrick, J.M., Wang, M.Y., Dawant, B.M., Maurer, C.R., Kessler, R.M., ...Collignon, A. (1997). Comparison and evaluation of retrospective intermodality brain image registration techniques.
Wong, J.C., Studholme, C., Hawkes, D.J., Maisey, M.N. (1997). Evaluation of the limits of visual detection of image misregistration in a brain fluorine-18 fluorodeoxyglucose PET-MRI study. EUR J NUCL MED, 24 (340-6997 (Print), 6), 642-650.

1996

Alexander, D.C., Buxton, B.F. (1996). An evaluation of physically based statistical colour models for image region characterisation.
Alexander, D.C., Buxton, B.F. (1996). Physically based statistical colour models for image region characterisation.
Atkinson, D., Loh, W.H., O'Reilly, J.J., Laming, R.I. (1996). Numerical Study of 10 cm Chirped Fiber Grating Pairs for Dispersion Compensation at 10 Gbit/s over 600 km of Non-Dispersion Shifted Fiber.. IEEE Photonics Technology Letters, 8 (8), 1085-1087.
Bladin, C.F., Colchester, A.C., Hawkes, D.J., Seifalian, A.M., Iqbal, N., Hardingham, C.R. (1996). Morphological and hemodynamic assessments of carotid stenosis using quantitative digital subtraction angiography. STROKE, 27 (039-2499 (Print), 9), 1672-1678.
Buxton, B.F., Alexander, D.C. (1996). Making the most of your image: colour and statistics.
Hill, D.L.G., Smith, P.N.P., Emery, C.L., Summers, P.E., Keevil, S.F., Pracy, J.P.M., ...Gleeson, M.J. (1996). MRI guided intranasal flexible micro-endoscopy.
Kwee, I.W., Tanikawa, Y., Proskurin, S.G., Arridge, S.R., Delpy, D.T., Yamada, Y. (1996). Null space regularization and MAP reconstruction in the ill-posed inverse imaging problem. Proceedings of SPIE, 2925 43-54.
Loh, W.H., Laming, R.I., Ellis, A.D., Atkinson, D. (1996). 10 Gbit/s Transmission over 700 km of Standard Single Mode Fibre with 10 cm Chirped Fibre Grating Compensator and Duobinary Transmitter. IEEE Photonics Technology Letters, 8 (9), 1258-1260.
Okada, E., Schweiger, M., Arridge, S.R., Firbank, M., Delpy, D.T. (1996). Experimental Verification of Monte Carlo and Finite Element Methods for the estimation of the optical pathlength in inhomogeneous tissue. Applied Optics, 35 (19), 3362-3371.
Schnabel, J.A., Arridge, S.R. (1996). Multiscale shape description of MR brain images using active contour models.
Schnabel, J.A., Arridge, S.R. (1996). A multi-scale shape description tool for 3D MR brain images.
Schnabel, J.A., Wang, L.Q., Arridge, S.R. (1996). Shape description of spinal cord atrophy in patients with MS.
Simmons, A., Arridge, S.R., Barker, G.J., Williams, S.C.R. (1996). Simulation of MRI cluster plots and application to neurological segmentation. Magnetic Resonance Imaging, 14 (1), 73-92. doi:10.1016/0730-725X(95)02040-Z
Studholme, C., Hill, D.L.G., Hawkes, D.J., I.E.E.E. (1996). Incorporating connected region labelling into automated image registration using mutual information.
Studholme, C., Hill, D.L., Hawkes, D.J. (1996). Automated 3-D registration of MR and CT images of the head. MED IMAGE ANAL, 1 (361-8415 (Print), 2), 163-175.
Thomas, D.G., Doshi, P., Colchester, A., Hawkes, D.J., Hill, D.L., Zhao, J., ...Evans, R.I. (1996). Craniotomy guidance using a stereo-video-based tracking system. STEREOTACT FUNCT NEUROSURG, 66 (011-6125 (Print), 1-3), 81-83.
Thomas, D.G.T., Doshi, P., Colchester, A., Hawkes, D.J., Hill, D.L.C., Zhao, J., ...Evans, R.I. (1996). Craniotomy guidance using a stereo-video-based tracking system.
Wong, W.L., Hussain, K., Chevretton, E., Hawkes, D.J., Baddeley, H., Maisey, M., McGurk, M. (1996). Validation and clinical application of computer-combined computed tomography and positron emission tomography with 2-[18F]fluoro-2-deoxy-D-glucose head and neck images. AM J SURG, 172 (002-9610 (Print), 6), 628-632.

1995

Arridge, S.R. (1995). Photon-measurement density-functions I: Analytical forms.. Applied Optics, 34 (31), 7395-7409.
ARRIDGE, S.R., HIRAOKA, M., SCHWEIGER, M. (1995). Modelling of noise for near-infrared transillumination imaging.
Arridge, S.R., Hiraoka, M., Schweiger, M. (1995). Statistical basis for the determination of optical pathlength in tissue.. Physics in Medicine and Biology, 40 (9), 1539-1558.
Arridge, S.R., Schweiger, M. (1995). Direct calculation of the moments of the distribution of photon time-of-flight in tissue with a finite-element method.. Applied Optics, 34 (15), 2683-2687.
ARRIDGE, S.R., SCHWEIGER, M. (1995). Sensitivity to prior knowledge in optical tomographic reconstruction.
ARRIDGE, S.R., SCHWEIGER, M. (1995). Reconstruction in optical tomography using MRI based prior knowledge.
Edwards, P.J., Hawkes, D.J., Hill, D.L., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance. J IMAGE GUID SURG, 1 (078-7844 (Print), 3), 172-178.
Edwards, P.J., Hawkes, D.J., Hill, D.L., Jewell, D., Spink, R., Strong, A., Gleeson, M. (1995). Augmentation of reality using an operating microscope for otolaryngology and neurosurgical guidance.. Journal of image guided surgery, 1 (3), 172-178. doi:10.1002/(sici)1522-712x(1995)1:3<172::aid-igs7>3.0.co;2-7
Edwards, P.J., Hill, D.L.G., Little, J.A., Sahni, V.A.S., Hawkes, D.J. (1995). Medical image registration incorporating deformations.
Griffin, L.D., Colchester, A.C. (1995). Superficial and deep structure in linear diffusion scale space: isophotes, critical points and separatrices. Image and Vision Computing, 13 (7), 543-557. doi:10.1016/0262-8856(95)91145-4
Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Cope, M., Delpy, D.T. (1995). Theoretical and experimental investigation of the effect of sulci on light propagation in brain tissue. Proceedings of SPIE, 2626 2-8.
Okada, E., Firbank, M., Schweiger, M., Arridge, S.R., Hebden, J.C., Hiraoka, M., Delpy, D.T. (1995). Experimental measurements on phantoms and Monte Carlo simulation to evaluate the effect of inhomogeneity on optical pathlength. Proceedings of SPIE, 2389 174-181.
Schnabel, J.A., Arridge, S.R. (1995). Active Contour Models for Shape Description using Multiscale Differential Invariants..
Schnabel, J.A., Arridge, S.R. (1995). Active contour models for shape description using multiscale differential invariants.
SCHNABEL, J., WANG, L.Q., RUECKERT, D., ARRIDGE, S. (1995). Fractal feature analysis and classification of MS lesions.
SCHWEIGER, M., ARRIDGE, S.R. (1995). Near-infrared imaging: Photon measurement density functions.
Schweiger, M., Arridge, S.R., Hiraoka, M., Delpy, D.T. (1995). The finite element method for the propagation of light in scattering media: boundary and source conditions.. Medical Physics, 22 (11), 1779-1792.
SIMMONS, A., ARRIDGE, S.R., BARKER, G.J. (1995). Simulation of MRI cluster plots.
Zouganeli, P., Stevens, P.J., Atkinson, D., Parry, G. (1995). Design Trade-Offs and Evaluation of the Performance Attainable by GaAs-Al0.3Ga0.7As Asymmetric Fabry-Perot Modulators. IEEE Journal of Quantum Electronics, 31 (5), 927-943.

1994

Atkinson, D., Loh, W.H., Afanasjev, V.V., Grudinin, A.B., Seeds, A.J., Payne, D.N. (1994). Increased Amplifier Spacing Using Quantum Well Saturable Ab sorbers and Spectral Filtering in a Soliton System.
Atkinson, D., Loh, W.H., Afanasjev, V.V., Grudinin, A.B., Seeds, A.J., Payne, D.N. (1994). Increased Amplifier Spacing in a Soliton System Using Quantum Well Saturable Absorbers and Spectral Filtering. Optics Letters, 19 (19), 1514-1516.
COLCHESTER, A.C.F., ZHAO, J., HENRI, C., EVANS, R.L., ROBERTS, P., MAITLAND, N., ...THOMAS, D.G. (1994). CRANIOTOMY SIMULATION AND GUIDANCE USING A STEREO VIDEO-BASED TRACKING SYSTEM.
Gandhe, A.J., Hill, D.L.G., Studholme, C., Hawkes, D.J., Ruff, C.F., Cox, T.C.S., ...Strong, A.J. (1994). Combined and three-dimensional rendered multimodal data for planning cranial base surgery: A prospective evaluation. Neurosurgery, 35 (3), 463-471.
Gandhe, A.J., Hill, D.L., Studholme, C., Hawkes, D.J., Ruff, C.F., Cox, T.C., ...Strong, A.J. (1994). Combined and three-dimensional rendered multimodal data for planning cranial base surgery: a prospective evaluation. NEUROSURGERY, 35 (148-396X (Print), 3), 463-470.
Griffin, L.D., Colchester, A.C.F., Roll, S.A., Studholme, C.S. (1994). Hierarchical segmentation satisfying constraints.
Hawkes, D.J., Seifalian, A.M., Colchester, A.C., Iqbal, N., Hardingham, C.R., Bladin, C.F., Hobbs, K.E. (1994). Validation of volume blood flow measurements using three-dimensional distance-concentration functions derived from digital x-ray angiograms. INVEST RADIOL, 29 (020-9996 (Print), 4), 434-442.
Hill, D.L.G., Hawkes, D.J. (1994). Medical image registration using knowledge of adjacency of anatomical structures.. Image and Vision Computing, 12 173-178.
HILL, D.L.G., STUDHOLME, C., HAWKES, D.J. (1994). VOXEL SIMILARITY MEASURES FOR AUTOMATED IMAGE REGISTRATION.
Hill, D.L., Hawkes, D.J., Gleeson, M.J., Cox, T.C., Strong, A.J., Wong, W.L., ...Sofat, A. (1994). Accurate frameless registration of MR and CT images of the head: applications in planning surgery and radiation therapy.. Radiology, 191 (2), 447-454.
Roll, S.A., Colchester, A.C.F., Summers, P.E., Griffin, L.D. (1994). Intensity-based object extraction from 3D medical images including a correction for partial volume errors.
Simmons, A., Arridge, S.R., Barker, G.J., Cluckie, A.J., Tofts, P.S. (1994). Improvements to the quality of MRI cluster analysis. Magnetic Resonance Imaging, 12 (8), 1191-1204.
Simmons, A., Barker, G.J., Tofts, P.S., Gass, A., Arridge, S.R. (1994). A method for visualization of MRI partial volume regions--PAIR (PArtial volume sensitised Inversion Recovery imaging).. Magnetic Resonance Imaging, 12 (5), 821-826. doi:10.1016/0730-725X(94)92207-1
Simmons, A., Tofts, P.S., Barker, G.J., Arridge, S.R. (1994). Sources of intensity non-uniformity in spin echo images at 1.5T. Magnetic Resonance in Medicine, 32 (1), 1191-1204.
SIMMONS, A., TOFTS, P.S., BARKER, G.J., ARRIDGE, S.R. (1994). SOURCES OF INTENSITY NONUNIFORMITY IN SPIN-ECHO IMAGES AT 1.5-T. MAGNETIC RESONANCE IN MEDICINE, 32 (1), 121-128. doi:10.1002/mrm.1910320117
STUDHOLME, C., HILL, D.L.G., HAWKES, D.J. (1994). USING VOXEL SIMILARITY AS A MEASURE OF MEDICAL IMAGE REGISTRATION.
SYLLAIOS, A.J., ANDERSON, J.M., COLOMBO, L., LITTLER, C.L., BROSTOW, G.J., CHRISTENSEN, C.R., ...CLARKE, F.W. (1994). MAGNETOOPTICAL CHARACTERIZATION OF HGCDTE THIN-FILMS.

1993

ARRIDGE, S.R., SCHWEIGER, M. (1993). THE USE OF MULTIPLE DATA-TYPES IN TIME-RESOLVED OPTICAL-ABSORPTION AND SCATTERING TOMOGRAPHY (TOAST).
Arridge, S.R., Schweiger, M. (1993). Inverse Methods for Optical Tomography..
Arridge, S.R., Schweiger, M., Hiraoka, M., Delpy, D.T. (1993). A finite element approach for modelling photon transport in tissue.. Medical Physics, 20 299-309.
Arridge, S.R., Schweiger, M., Hiraoka, M., Delpy, D.T. (1993). Performance of an iterative reconstruction algorithm for near-infrared absorption and scatter imaging. Proceedings of SPIE, (1888), 360-371.
Essenpreis, M., Cope, M., Elwell, C., Arridge, S., van der Zee, P., Delpy, D. (1993). Wavelength dependence of the differential pathlength factor and the log slope in time-resolved tissue spectroscopy.
ESSENPREIS, M., ELWELL, C.E., COPE, M., VANDERZEE, P., ARRIDGE, S.R., DELPY, D.T. (1993). SPECTRAL DEPENDENCE OF TEMPORAL POINT SPREAD FUNCTIONS IN HUMAN TISSUES. APPLIED OPTICS, 32 (4), 418-425.
HEBDEN, J., DELPY, D., ARRIDGE, S. (1993). INFRARED-LASERS MUSCLE IN ON MEDICAL IMAGING. PHYSICS WORLD, 6 (8), 23-24.
Hill, D.L.G., Hawkes, D.J., Hussain, Z., Green, S.E.M., Ruff, C.F., Robinson, G.P. (1993). Accurate combination of CT and MR data of the head: Validation and applications in surgical and therapy planning.. Computerized Medical Imaging, 17 357-362.
Hiraoka, M., Firbank, M., Essenpreis, M., Cope, M., Arridge, S.R., van der Zee, P., Delpy, D.T. (1993). Monte Carlo simulation of light transport through inhomogeneous tissue. 1888 149-159.
Hiraoka, M., Firbank, M., Essenpreis, M., Cope, M., Arridge, S.R., van der Zee, P., Delpy, D.T. (1993). A Monte Carlo investigation of optical pathlength in inhomogeneous tissue and its application to near-infrared spectroscopy.. Physics in Medicine and Biology, 38 1859-1876.
Loh, W.H., Atkinson, D., Morkel, P.R., Grey, R., Seeds, A.J., Payne, D.N. (1993). Diode-pumped selfstarting passively modelocked neodymium-doped fibre laser. Electronics Letters, 29 (9), 808-810.
Loh, W.H., Atkinson, D., Morkel, P.R., Hopkinson, M., Rivers, A., Seeds, A.J., Payne, D.N. (1993). All solid-state subpicosecond passively mode locked erbium-doped fiber laser. Applied Physics Letters, 63 (1), 4-6.
Loh, W.H., Atkinson, D., Morkel, P.R., Hopkinson, M., Rivers, A., Seeds, A.J., Payne, D.N. (1993). Passively Mode-Locked Er3+ Fiber Laser Using a Semiconductor Nonlinear Mirror. IEEE Photonics Technology Letters, 5 (1), 35-37.
Neelin, P., Crossman, J., Hawkes, D.J., Ma, Y., Evans, A.C. (1993). Validation of an MRI/PET landmark registration method using 3D simulated PET images and point simulations. COMPUT MED IMAGING GRAPH, 17 (895-6111 (Print), 4-5), 351-356.
NEELIN, P., CROSSMAN, J., HAWKES, D.J., MA, Y., EVANS, A.C. (1993). VALIDATION OF AN MRI/PET LANDMARK REGISTRATION METHOD USING 3D SIMULATED PET IMAGES AND POINT SIMULATIONS. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 17 (4-5), 351-356. doi:10.1016/0895-6111(93)90028-L
Robinson, G.P., Colchester, A.C.F., Griffin, L.D. (1993). Model-based recognition of anatomical objects from medical images.
Schweiger, M., Arridge, S.R., Delpy, D.T. (1993). Application of the finite element method for the forward and inverse models in optical tomography.. Journal of Mathematical Imaging and Vision, 3 263-283.
SCHWEIGER, M., ARRIDGE, S.R., HIRAOKA, M., FIRBANK, M., DELPY, D.T. (1993). COMPARISON OF A FINITE-ELEMENT FORWARD MODEL WITH EXPERIMENTAL PHANTOM RESULTS - APPLICATION TO IMAGE-RECONSTRUCTION.

1992

Arridge, S.R., Cope, M., Delpy, D.T. (1992). The theoretical basis for the determination of optical pathlengths in tissue: temporal and frequency analysis.. Physics in Medicine and Biology, 37 (7), 1531-1560.
Arridge, S.R., Schweiger, M., Delpy, D.T. (1992). Iterative reconstruction of near-infrared absorption images. Proceedings of SPIE, 1767 372-383.
Brunt, J.N., Wicks, D.A., Hawkes, D.J., Seifalian, A.M., du Boulay, G.H., Colchester, A.F., Wallis, A. (1992). The measurement of blood flow waveforms from X-ray angiography. Part 1: Principles of the method and preliminary validation. PROC INST MECH ENG [H ], 206 (954-4119 (Print), 2), 73-85.
Colchester, A.C.F., Robinson, G.P., Griffin, L.D. (1992). A unified approach to the segmentation of grey-level and dot-pattern images.
Colchester, A., Seifalian, A., Hawkes, D., Brunt, J., Wicks, D., du Boulay, G., Hobbs, K. (1992). Analysis of the variation of the distance-density curves with time as a way of extracting flow information from digital angiograms.. Investigative radiology, 27 (3), 274-.
COLCHESTER, A., SEIFALIAN, A., HAWKES, D., BRUNT, J., WICKS, D., DUBOULAY, G., HOBBS, K. (1992). DETERMINATION OF INSTANTANEOUS AND AVERAGE BLOOD-FLOW RATES FROM DIGITAL ANGIOGRAMS OF VESSEL PHANTOMS USING DISTANCE-DENSITY CURVES. INVESTIGATIVE RADIOLOGY, 27 (3), 274. doi:10.1097/00004424-199203000-00023
HAWKES, D.J., HARDINGHAM, C.R., SEIFALIAN, A.M., VIRDEE, M., COLCHESTER, A.C.F. (1992). RECENT ADVANCES IN EXTRACTING QUANTITATIVE INFORMATION FROM X-RAY ANGIOGRAPHIC DATA.
Maisey, M.N., Hawkes, D.J., Lukawieck-Vydelingum, A.M. (1992). Synergistic imaging. EUR J NUCL MED, 19 (340-6997 (Print), 12), 1002-1005.
Robinson, G.P., Colchester, A.C., Griffin, L.D. (1992). Hierarchical shape representation for use in anatomical object recognition.
Schweiger, M., Arridge, S.R., Hiraoka, M., Delpy, D.T. (1992). Application of the finite element method for the forward model in infrared absorption imaging. Proceedings of SPIE, 1768 97-108.
SEIFALIAN, A.M., HAWKES, D.J., BLADIN, C.F., HARDINGHAM, C.R., IQBAL, N., COLCHESTER, A.C.F., HOBBS, K.E.F. (1992). VOLUME BLOOD-FLOW WAVE-FORMS MEASUREMENTS FROM QUANTITATIVE X-RAY ANGIOGRAPHIC DATA WITH AID OF 3-DIMENSIONAL RECONSTRUCTIONS.
SIMMONS, A., ARRIDGE, S.R., BARKER, G.J., TOFTS, P.S. (1992). SEGMENTATION OF NEUROANATOMY IN MAGNETIC-RESONANCE IMAGES.
VANDERZEE, P., COPE, M., ARRIDGE, S.R., ESSENPREIS, M., POTTER, L.A., EDWARDS, A.D., ...REYNOLDS, E.O.R. (1992). EXPERIMENTALLY MEASURED OPTICAL PATHLENGTHS FOR THE ADULT HEAD, CALF AND FOREARM AND THE HEAD OF THE NEWBORN-INFANT AS A FUNCTION OF INTER OPTODE SPACING.

1991

Arridge, S.R., van der Zee, P., Cope, M., Delpy, D.T. (1991). Reconstruction methods for infrared absorption imaging. Proceedings of SPIE, 1431 204-215.
Cope, M., van der Zee, P., Essenpreis, M., Arridge, S.R., Delpy, D.T. (1991). Data analysis methods for near-infrared spectroscopy of tissue: problems in determining the relative cytochrome aa3 concentration. Proceedings of SPIE, 1431 251-262.
Hawkes, D.J., Hardingham, C.R., Colchester, A.C. (1991). Matching of geometric models in the analysis of lumen shape in digital X-ray angiography. PROG CLIN BIOL RES, 363 (361-7742 (Print)), 341-353.
Hawkes, D.J., Robinson, L., Crossman, J.E., Sayman, H.B., Mistry, R., Maisey, M.N., Spencer, J.D. (1991). Registration and display of the combined bone scan and radiograph in the diagnosis and management of wrist injuries. EUR J NUCL MED, 18 (340-6997 (Print), 9), 752-756.
Hill, D.L., Hawkes, D.J., Crossman, J.E., Gleeson, M.J., Cox, T.C., Bracey, E.E., ...Graves, P. (1991). Registration of MR and CT images for skull base surgery using point-like anatomical features. BR J RADIOL, 64 (007-1285 (Print), 767), 1030-1035.
Hill, D.L., Hawkes, D.J., Crossman, J.E., Gleeson, M.J., Cox, T.C., Bracey, E.E., ...Graves, P. (1991). Registration of MR and CT images for skull base surgery using point-like anatomical features.. The British journal of radiology, 64 (767), 1030-1035. doi:10.1259/0007-1285-64-767-1030
Lehmann, E.D., Hawkes, D.J., Hill, D.L., Bird, C.F., Robinson, G.P., Colchester, A.C., Maisey, M.N. (1991). Computer-aided interpretation of SPECT images of the brain using an MRI-derived 3D neuro-anatomical atlas. MED INFORM (LOND), 16 (307-7640 (Print), 2), 151-166.
Lynch, J.A., Hawkes, D.J., Buckland-Wright, J.C. (1991). A robust and accurate method for calculating the fractal signature of texture in macroradiographs of osteoarthritic knees. MED INFORM (LOND), 16 (307-7640 (Print), 2), 241-251.
Lynch, J.A., Hawkes, D.J., Buckland-Wright, J.C. (1991). Analysis of texture in macroradiographs of osteoarthritic knees using the fractal signature. PHYS MED BIOL, 36 (031-9155 (Print), 6), 709-722.
Parry, G., Whitehead, M., Stevens, P., Rivers, A., Barnes, P., Atkinson, D., ...Roberts, C. (1991). The design and application of III-V multiquantum well optical modulators.. Physica Scripta, 210-214.
Seifalian, A.M., Hawkes, D.J., Hardingham, C.R., Colchester, A.C., Reidy, J.F. (1991). Validation of a quantitative radiographic technique to estimate pulsatile blood flow waveforms using digital subtraction angiographic data. J BIOMED ENG, 13 (141-5425 (Print), 3), 225-233.
Seifalian, A.M., Stansby, G.P., Hobbs, K.E., Hawkes, D.J., Colchester, A.C. (1991). Measurement of liver blood flow: a review. HPB SURG, 4 (894-8569 (Print), 3), 171-186.

1990

ARRIDGE, S.R. (1990). MANIPULATION OF VOLUME DATA FOR SURGICAL SIMULATION.
ARRIDGE, S.R., LINNEY, A.D. (1990). INTERACTIVE OBJECT DISSECTION USING AN ARBITRARY VOLUME MASK.
ARRIDGE, S.R., VANDERZEE, P., COPE, M., DELPY, D.T. (1990). NEW RESULTS FOR THE DEVELOPMENT OF INFRARED-ABSORPTION IMAGING.
Arridge, S.R., Van der Zee, P., Cope, M., Delpy, D.T. (1990). New results for the development of infrared absorption imaging. BIOMEDICAL IMAGE PROCESSING, PROC SPIE, 1245 91-103.
Atkinson, D., Parry, G., Austin, E.J. (1990). Modelling of Electro-Absorption in Coupled Quantum Wells with Applications to Low-Voltage Optical Modulation. Semiconductor Science and Technology, 5 516-524.
Parry, G., Whitehead, M., Stevens, P., Rivers, A., Barnes, P., Atkinson, D., ...Roberts, C. (1990). The Design and Application of III-V Multiquantum Well Optical Modulators.
VANDERZEE, P., ARRIDGE, S.R., COPE, M., DELPY, D.T. (1990). THE EFFECT OF OPTODE POSITIONING ON OPTICAL PATHLENGTH IN NEAR-INFRARED SPECTROSCOPY OF BRAIN.
WYATT, J.S., COPE, M., DELPY, D.T., VANDERZEE, P., ARRIDGE, S., EDWARDS, A.D., REYNOLDS, E.O.R. (1990). MEASUREMENT OF OPTICAL-PATH LENGTH FOR CEREBRAL NEAR-INFRARED SPECTROSCOPY IN NEWBORN-INFANTS. DEVELOPMENTAL NEUROSCIENCE, 12 (2), 140-144. doi:10.1159/000111843

1989

ARRIDGE, S.R., GRINDROD, S.R., LINNEY, A.D., TOFTS, P.S., WICKS, D. (1989). USING GREYSCALE VOXEL DATABASES FOR IMPROVED SHADING AND SEGMENTATION. MEDICAL INFORMATICS, 14 (2), 157-171.
Arridge, S.R., van der Zee, P., Delpy, D.T., Cope, M. (1989). Particle sizing in the Mie scattering region: singular value analysis.. Inverse Problems, 5 671-689.
Delpy, D.T., Arridge, S.R., Cope, M., Edwards, D., Reynolds, E.O., Richardson, C.E., ...van der Zee, P. (1989). Quantitation of pathlength in optical spectroscopy.. Advances in Experimental Medicine and Biology, 248 41-46.
LINNEY, A.D., GRINDROD, S.R., ARRIDGE, S.R., MOSS, J.P. (1989). 3-DIMENSIONAL VISUALIZATION OF COMPUTERIZED-TOMOGRAPHY AND LASER SCAN DATA FOR THE SIMULATION OF MAXILLO-FACIAL SURGERY. MEDICAL INFORMATICS, 14 (2), 109-121.
Seifalian, A.M., Hawkes, D.J., Colchester, A.C., Hobbs, K.E. (1989). A new algorithm for deriving pulsatile blood flow waveforms tested using stimulated dynamic angiographic data. NEURORADIOLOGY, 31 (028-3940 (Print), 3), 263-269.

1988

Delpy, D.T., Cope, M., van der Zee, P., Arridge, S., Wray, S., Wyatt, J. (1988). Estimation of optical pathlength through tissue from direct time of flight measurement.. PHYSICS IN MEDICINE AND BIOLOGY, 33 (12), 1433-1442. doi:10.1088/0031-9155/33/12/008
MOSS, J.P., GRINDROD, S.R., LINNEY, A.D., ARRIDGE, S.R., JAMES, D. (1988). A COMPUTER-SYSTEM FOR THE INTERACTIVE PLANNING AND PREDICTION OF MAXILLOFACIAL SURGERY. AMERICAN JOURNAL OF ORTHODONTICS AND DENTOFACIAL ORTHOPEDICS, 94 (6), 469-475. doi:10.1016/0889-5406(88)90004-2
SEIFALIAN, A.M., HAWKES, D.J., COLCHESTER, A.C.F., HOBBS, K.E.F. (1988). COMPARISON OF PROCESSING TECHNIQUES FOR MEASUREMENT OF INTRAVASCULAR BLOOD-FLOW FROM SIMULATED DYNAMIC ANGIOGRAPHIC IMAGES. BRITISH JOURNAL OF RADIOLOGY, 61 (728), 721.

1987

HAWKES, D.J., FITZGERALD, M., BELLI, A., TILLER, G., STEWART, A. (1987). ACCEPTANCE TESTING AND QUALITY-CONTROL IN DIGITAL FLUOROGRAPHY.
MOSS, J.P., LINNEY, A.D., GRINDROD, S.R., ARRIDGE, S.R., CLIFTON, J.S. (1987). 3-DIMENSIONAL VISUALIZATION OF THE FACE AND SKULL USING COMPUTERIZED-TOMOGRAPHY AND LASER SCANNING TECHNIQUES. EUROPEAN JOURNAL OF ORTHODONTICS, 9 (4), 247-253.

1986

Hawkes, D.J., Jackson, D.F., Parker, R.P. (1986). Tissue analysis by dual-energy computed tomography. BR J RADIOL, 59 (007-1285 (Print), 702), 537-542.
MOSS, J.P., LINNEY, A., ARRIDGE, S., HAMMOND, M. (1986). AN INVESTIGATION OF THE METHOD OF USING LASER-BEAMS TO MONITOR THE FACIAL MORPHOLOGY OF SURGICAL PATIENTS.

1985

ARRIDGE, S., MOSS, J.P., LINNEY, A.D., JAMES, D.R. (1985). 3 DIMENSIONAL DIGITIZATION OF THE FACE AND SKULL. JOURNAL OF MAXILLOFACIAL SURGERY, 13 (3), 136-143. doi:10.1016/S0301-0503(85)80034-5
ARRIDGE, S.R., COPE, M., VANDERZEE, P., HILLSON, P.J., DELPHY, D.T. (1985). NEAR-INFRARED TRANS-ILLUMINATION AS A METHOD OF VISUALIZATION AND MEASUREMENT OF THE OXYGENATION STATE OF BRAIN AND MUSCLE IN NEWBORN-INFANTS. JOURNAL OF PHOTOGRAPHIC SCIENCE, 33 (6), 227.

1983

Jackson, D.F., Hawkes, D.J. (1983). Energy dependence in the spectral factor approach to computed tomography. PHYS MED BIOL, 28 (031-9155 (Print), 3), 289-293.

1982

Husband, J.E., Hawkes, D.J., Peckham, M.J. (1982). CT estimations of mean attenuation values and volume in testicular tumors: a comparison with surgical and histologic findings. RADIOLOGY, 144 (033-8419 (Print), 3), 553-558.

1980

Hawkes, D.J., Jackson, D.F. (1980). An accurate parametrisation of the x-ray attenuation coefficient. PHYS MED BIOL, 25 (031-9155 (Print), 6), 1167-1171.
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